Wall clock time and date at job start Tue Mar 31 2020 17:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.50696 * 109.47062 * 120.00437 * 2 1 3 5 5 N 1.30014 * 127.33674 * 299.95066 * 4 2 1 6 6 O 1.20651 * 112.30420 * 180.02562 * 5 4 2 7 7 C 1.33489 * 113.15774 * 359.71880 * 6 5 4 8 8 C 1.37366 * 106.34111 * 0.45064 * 7 6 5 9 9 C 1.47394 * 128.56430 * 179.86027 * 8 7 6 10 10 O 1.21609 * 119.99832 * 172.81784 * 9 8 7 11 11 N 1.34775 * 119.99990 * 352.81048 * 9 8 7 12 12 C 1.48259 * 127.72983 * 173.79056 * 11 9 8 13 13 C 1.54717 * 104.66552 * 141.19376 * 12 11 9 14 14 C 1.53034 * 104.47441 * 23.66195 * 13 12 11 15 15 C 1.53892 * 111.37115 * 121.01421 * 14 13 12 16 16 C 1.55136 * 101.45276 * 154.99501 * 15 14 13 17 17 N 1.47549 * 105.06796 * 324.20679 * 16 15 14 18 18 C 1.36931 * 125.67170 * 203.97309 * 17 16 15 19 19 H 1.08005 * 119.99921 * 180.02562 * 18 17 16 20 20 C 1.38815 * 120.00101 * 0.02562 * 18 17 16 21 21 N 1.31615 * 119.99996 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47734 * 60.00122 * 22 20 18 24 24 H 1.48509 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47494 * 299.99560 * 22 20 18 26 26 C 1.47599 * 108.51523 * 23.93449 * 17 16 15 27 27 C 1.48440 * 127.73903 * 353.79190 * 11 9 8 28 28 H 1.09000 * 109.46672 * 300.00204 * 1 2 3 29 29 H 1.08995 * 109.47604 * 59.99589 * 1 2 3 30 30 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46468 * 240.00295 * 2 1 3 32 32 H 1.09005 * 109.47230 * 300.00152 * 3 2 1 33 33 H 1.09000 * 109.47459 * 60.00277 * 3 2 1 34 34 H 1.09004 * 109.47183 * 180.02562 * 3 2 1 35 35 H 1.08007 * 126.83223 * 180.30753 * 7 6 5 36 36 H 1.09000 * 110.40689 * 22.39170 * 12 11 9 37 37 H 1.09007 * 110.49691 * 260.03453 * 12 11 9 38 38 H 1.09003 * 110.43386 * 264.91322 * 13 12 11 39 39 H 1.09001 * 110.54009 * 142.46366 * 13 12 11 40 40 H 1.09008 * 111.02844 * 36.95156 * 15 14 13 41 41 H 1.08993 * 111.06252 * 273.05466 * 15 14 13 42 42 H 1.09000 * 110.34388 * 83.13261 * 16 15 14 43 43 H 1.09003 * 110.33875 * 205.28270 * 16 15 14 44 44 H 0.97001 * 120.00120 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.94839 * 238.65647 * 26 17 16 46 46 H 1.09004 * 109.96112 * 117.41539 * 26 17 16 47 47 H 1.08996 * 110.46559 * 99.69350 * 27 11 9 48 48 H 1.08998 * 110.46574 * 337.11106 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8086 -0.3926 2.4710 6 8 2.3447 -1.1505 3.2417 7 6 3.0250 -2.1242 2.6328 8 6 2.8808 -1.9110 1.2834 9 6 3.4342 -2.6953 0.1649 10 8 3.1016 -2.4436 -0.9774 11 7 4.3090 -3.6913 0.4081 12 6 4.8703 -4.6627 -0.5611 13 6 6.3474 -4.8336 -0.1337 14 6 6.3649 -4.4438 1.3461 15 6 6.8725 -5.6008 2.2247 16 6 7.4153 -4.8346 3.4596 17 7 7.9911 -3.5896 2.9159 18 6 8.9637 -2.8326 3.5125 19 1 9.3194 -1.9335 3.0311 20 6 9.4927 -3.2206 4.7358 21 7 9.0596 -4.3165 5.3221 22 14 10.8190 -2.1875 5.5498 23 1 10.2966 -0.8205 5.8023 24 1 11.2130 -2.8131 6.8378 25 1 12.0025 -2.1078 4.6564 26 6 7.3429 -3.2994 1.6220 27 6 4.9264 -4.0614 1.7063 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 3.5806 -2.9201 3.1067 36 1 4.8115 -4.2656 -1.5745 37 1 4.3434 -5.6147 -0.4959 38 1 6.9898 -4.1680 -0.7102 39 1 6.6642 -5.8691 -0.2583 40 1 7.6695 -6.1513 1.7246 41 1 6.0566 -6.2668 2.5052 42 1 6.6039 -4.6064 4.1508 43 1 8.1855 -5.4209 3.9609 44 1 9.4289 -4.5875 6.1772 45 1 8.0930 -3.2522 0.8326 46 1 6.8030 -2.3542 1.6800 47 1 4.4054 -4.9110 2.1477 48 1 4.9176 -3.2115 2.3886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041351547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:24 Heat of formation + Delta-G solvation = 60.098471 kcal Electronic energy + Delta-G solvation = -29881.565896 eV Core-core repulsion = 25940.862800 eV Total energy + Delta-G solvation = -3940.703096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.96791 -40.32063 -38.45455 -36.39914 -35.65310 -33.20216 -32.50300 -31.76953 -30.50057 -29.31791 -28.17864 -27.32649 -26.21359 -25.09290 -23.90833 -23.50960 -22.15714 -20.42819 -20.36843 -19.97809 -18.78322 -17.72763 -17.51217 -16.97293 -16.70125 -15.82261 -15.65772 -15.01503 -14.86277 -14.58421 -14.38743 -14.04296 -13.76112 -13.68274 -13.47127 -13.40163 -12.82882 -12.44607 -12.38776 -12.11410 -11.95318 -11.74500 -11.64694 -11.53141 -11.48598 -11.46591 -11.30698 -10.98391 -10.96238 -10.83483 -10.31016 -10.17828 -10.07401 -10.06110 -10.02259 -9.82680 -9.77190 -9.56178 -8.78385 -8.70047 -6.91103 -5.71824 -3.13385 0.99187 1.72911 2.60933 3.12465 3.13836 3.37166 3.42028 3.42651 3.88317 4.13692 4.40294 4.45510 4.61136 4.76419 4.85480 4.89049 4.96378 4.99990 5.03730 5.18648 5.31383 5.35133 5.42750 5.45883 5.52873 5.57851 5.61222 5.65117 5.68245 5.75303 5.77759 5.83835 5.87923 5.94903 6.05139 6.07855 6.21513 6.21973 6.29665 6.44570 6.48957 6.64294 6.73129 7.37644 7.42746 7.55572 7.77644 8.02136 8.14466 8.28520 9.15513 9.75700 10.40174 11.31979 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.003518 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.264123 B = 7957.723378 C = 9162.519391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.143 4.143 4 C 0.077 3.923 5 N -0.356 5.356 6 O 0.097 5.903 7 C -0.005 4.005 8 C -0.252 4.252 9 C 0.619 3.381 10 O -0.537 6.537 11 N -0.616 5.616 12 C 0.110 3.890 13 C -0.120 4.120 14 C -0.082 4.082 15 C -0.132 4.132 16 C 0.150 3.850 17 N -0.604 5.604 18 C -0.224 4.224 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.285 1.285 26 C 0.150 3.850 27 C 0.104 3.896 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.012 0.988 43 H 0.107 0.893 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.020 0.980 47 H 0.080 0.920 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 0.130 -9.488 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.201 4.201 4 C -0.086 4.086 5 N -0.062 5.062 6 O 0.038 5.962 7 C -0.087 4.087 8 C -0.259 4.259 9 C 0.408 3.592 10 O -0.416 6.416 11 N -0.349 5.349 12 C -0.012 4.012 13 C -0.159 4.159 14 C -0.084 4.084 15 C -0.171 4.171 16 C 0.026 3.974 17 N -0.330 5.330 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.024 3.976 27 C -0.018 4.018 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.124 0.876 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.038 0.962 47 H 0.098 0.902 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.612 1.322 -9.278 17.360 hybrid contribution 1.223 -0.087 0.134 1.234 sum -13.389 1.236 -9.144 16.261 Atomic orbital electron populations 1.21799 0.93498 1.02195 1.02356 1.19787 0.96172 0.95690 0.92703 1.21824 1.01505 0.94379 1.02384 1.24770 0.96432 0.93568 0.93853 1.73604 1.16830 1.13994 1.01762 1.84605 1.48406 1.29302 1.33863 1.27132 0.95123 0.94113 0.92365 1.22217 1.08342 1.01435 0.93921 1.16321 0.77843 0.78183 0.86825 1.90748 1.61008 1.67942 1.21860 1.48885 1.43396 1.30911 1.11735 1.22420 0.93589 0.91500 0.93728 1.22508 0.95259 1.02570 0.95517 1.21569 0.93638 0.98419 0.94753 1.23012 0.99702 0.95641 0.98725 1.22005 0.97445 0.87278 0.90709 1.44661 1.43442 1.26258 1.18647 1.19017 1.11295 1.03828 1.01082 0.90641 1.24753 1.00192 0.98044 0.97424 1.69765 1.45329 1.24202 1.17777 0.86173 0.81488 0.79323 0.78643 1.21195 1.21522 1.21167 1.21268 0.92723 0.93699 0.89861 1.22776 0.93068 1.00661 0.85330 0.92255 0.91594 0.92507 0.87090 0.91576 0.92187 0.92367 0.75175 0.89899 0.90931 0.90633 0.89879 0.91474 0.91955 0.97025 0.87557 0.93644 0.95447 0.96249 0.90220 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 2 C -0.02 -0.29 3.33 -91.77 -0.31 -0.60 16 3 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 4 C 0.08 1.07 6.09 -79.77 -0.49 0.59 16 5 N -0.36 -5.08 12.01 34.78 0.42 -4.66 16 6 O 0.10 1.31 11.06 18.66 0.21 1.52 16 7 C -0.01 -0.07 10.73 30.41 0.33 0.26 16 8 C -0.25 -3.54 6.38 -102.89 -0.66 -4.19 16 9 C 0.62 9.29 7.90 -12.53 -0.10 9.19 16 10 O -0.54 -9.17 15.54 5.27 0.08 -9.09 16 11 N -0.62 -8.22 3.33 -170.80 -0.57 -8.79 16 12 C 0.11 1.27 7.09 -2.17 -0.02 1.26 16 13 C -0.12 -1.46 6.31 -25.81 -0.16 -1.62 16 14 C -0.08 -1.22 0.79 -153.93 -0.12 -1.34 16 15 C -0.13 -2.10 5.90 -25.14 -0.15 -2.25 16 16 C 0.15 3.27 5.81 -2.34 -0.01 3.25 16 17 N -0.60 -14.36 3.42 -170.14 -0.58 -14.94 16 18 C -0.22 -5.99 10.29 -15.06 -0.15 -6.15 16 19 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -25.60 10.09 55.49 0.56 -25.04 16 22 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.15 2.90 6.37 -3.42 -0.02 2.88 16 27 C 0.10 1.35 4.77 -2.90 -0.01 1.33 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 1.47 6.33 -51.93 -0.33 1.14 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.23 2.30 5.31 -52.48 -0.28 2.02 16 36 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.96 7.41 -51.93 -0.38 0.58 16 39 H 0.08 0.88 7.62 -51.93 -0.40 0.49 16 40 H 0.07 1.08 7.90 -51.92 -0.41 0.67 16 41 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.11 2.68 5.88 -51.93 -0.31 2.38 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.03 0.54 7.48 -51.93 -0.39 0.16 16 46 H 0.02 0.39 7.63 -51.93 -0.40 0.00 16 47 H 0.08 0.88 7.59 -51.93 -0.39 0.48 16 48 H 0.09 1.19 4.57 -51.93 -0.24 0.95 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -30.87 376.42 -7.77 -38.64 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.25 Total: 0.24 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.29 Total: -0.02 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.17 Total: -53.44 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.29 Total: -7.58 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.87 -7.77 -38.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041351547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.742 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds