Wall clock time and date at job start Tue Mar 31 2020 17:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.50696 * 109.47062 * 120.00437 * 2 1 3 5 5 N 1.30014 * 127.33674 * 299.95066 * 4 2 1 6 6 O 1.20651 * 112.30420 * 180.02562 * 5 4 2 7 7 C 1.33489 * 113.15774 * 359.71880 * 6 5 4 8 8 C 1.37366 * 106.34111 * 0.45064 * 7 6 5 9 9 C 1.47394 * 128.56430 * 179.86027 * 8 7 6 10 10 O 1.21609 * 119.99832 * 172.81784 * 9 8 7 11 11 N 1.34775 * 119.99990 * 352.81048 * 9 8 7 12 12 C 1.48259 * 127.72983 * 173.79056 * 11 9 8 13 13 C 1.54717 * 104.66552 * 141.19376 * 12 11 9 14 14 C 1.53034 * 104.47441 * 23.66195 * 13 12 11 15 15 C 1.53892 * 111.37115 * 121.01421 * 14 13 12 16 16 C 1.55136 * 101.45276 * 154.99501 * 15 14 13 17 17 N 1.47549 * 105.06796 * 324.20679 * 16 15 14 18 18 C 1.36931 * 125.67170 * 203.97309 * 17 16 15 19 19 H 1.08005 * 119.99921 * 180.02562 * 18 17 16 20 20 C 1.38815 * 120.00101 * 0.02562 * 18 17 16 21 21 N 1.31615 * 119.99996 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99714 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47734 * 60.00122 * 22 20 18 24 24 H 1.48509 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47494 * 299.99560 * 22 20 18 26 26 C 1.47599 * 108.51523 * 23.93449 * 17 16 15 27 27 C 1.48440 * 127.73903 * 353.79190 * 11 9 8 28 28 H 1.09000 * 109.46672 * 300.00204 * 1 2 3 29 29 H 1.08995 * 109.47604 * 59.99589 * 1 2 3 30 30 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46468 * 240.00295 * 2 1 3 32 32 H 1.09005 * 109.47230 * 300.00152 * 3 2 1 33 33 H 1.09000 * 109.47459 * 60.00277 * 3 2 1 34 34 H 1.09004 * 109.47183 * 180.02562 * 3 2 1 35 35 H 1.08007 * 126.83223 * 180.30753 * 7 6 5 36 36 H 1.09000 * 110.40689 * 22.39170 * 12 11 9 37 37 H 1.09007 * 110.49691 * 260.03453 * 12 11 9 38 38 H 1.09003 * 110.43386 * 264.91322 * 13 12 11 39 39 H 1.09001 * 110.54009 * 142.46366 * 13 12 11 40 40 H 1.09008 * 111.02844 * 36.95156 * 15 14 13 41 41 H 1.08993 * 111.06252 * 273.05466 * 15 14 13 42 42 H 1.09000 * 110.34388 * 83.13261 * 16 15 14 43 43 H 1.09003 * 110.33875 * 205.28270 * 16 15 14 44 44 H 0.97001 * 120.00120 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.94839 * 238.65647 * 26 17 16 46 46 H 1.09004 * 109.96112 * 117.41539 * 26 17 16 47 47 H 1.08996 * 110.46559 * 99.69350 * 27 11 9 48 48 H 1.08998 * 110.46574 * 337.11106 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8086 -0.3926 2.4710 6 8 2.3447 -1.1505 3.2417 7 6 3.0250 -2.1242 2.6328 8 6 2.8808 -1.9110 1.2834 9 6 3.4342 -2.6953 0.1649 10 8 3.1016 -2.4436 -0.9774 11 7 4.3090 -3.6913 0.4081 12 6 4.8703 -4.6627 -0.5611 13 6 6.3474 -4.8336 -0.1337 14 6 6.3649 -4.4438 1.3461 15 6 6.8725 -5.6008 2.2247 16 6 7.4153 -4.8346 3.4596 17 7 7.9911 -3.5896 2.9159 18 6 8.9637 -2.8326 3.5125 19 1 9.3194 -1.9335 3.0311 20 6 9.4927 -3.2206 4.7358 21 7 9.0596 -4.3165 5.3221 22 14 10.8190 -2.1875 5.5498 23 1 10.2966 -0.8205 5.8023 24 1 11.2130 -2.8131 6.8378 25 1 12.0025 -2.1078 4.6564 26 6 7.3429 -3.2994 1.6220 27 6 4.9264 -4.0614 1.7063 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 3.5806 -2.9201 3.1067 36 1 4.8115 -4.2656 -1.5745 37 1 4.3434 -5.6147 -0.4959 38 1 6.9898 -4.1680 -0.7102 39 1 6.6642 -5.8691 -0.2583 40 1 7.6695 -6.1513 1.7246 41 1 6.0566 -6.2668 2.5052 42 1 6.6039 -4.6064 4.1508 43 1 8.1855 -5.4209 3.9609 44 1 9.4289 -4.5875 6.1772 45 1 8.0930 -3.2522 0.8326 46 1 6.8030 -2.3542 1.6800 47 1 4.4054 -4.9110 2.1477 48 1 4.9176 -3.2115 2.3886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041351547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:23 Heat of formation + Delta-G solvation = 42.488588 kcal Electronic energy + Delta-G solvation = -29882.329518 eV Core-core repulsion = 25940.862800 eV Total energy + Delta-G solvation = -3941.466718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.02410 -41.47859 -39.72231 -37.43749 -37.01832 -34.57944 -33.90030 -32.81049 -31.93739 -30.71853 -29.52120 -28.15771 -27.59360 -26.58332 -25.11315 -24.60995 -23.29412 -22.14403 -21.38625 -21.03095 -20.03616 -18.81853 -18.77678 -18.55992 -17.79231 -16.95151 -16.78488 -16.73036 -16.07084 -15.81550 -15.53125 -15.44390 -15.09155 -14.86505 -14.56621 -14.30435 -14.15090 -13.80064 -13.61830 -13.23385 -13.18805 -13.03126 -12.96044 -12.84374 -12.71553 -12.60069 -12.43608 -12.36678 -12.35623 -12.03496 -11.95163 -11.78350 -11.47132 -11.42838 -11.24498 -11.06638 -11.04823 -10.84581 -10.68926 -9.83038 -8.84025 -7.75099 -5.17814 -0.04320 0.67049 1.47795 1.48805 1.55281 1.57565 2.02406 2.13193 2.50424 2.87411 3.13999 3.31978 3.38488 3.52686 3.66800 3.72164 3.76084 3.91675 4.06208 4.08561 4.10613 4.26588 4.30138 4.36477 4.41477 4.53980 4.66852 4.67745 4.71704 4.73790 4.81876 4.82728 4.83982 4.88377 4.93708 5.04081 5.10567 5.13547 5.19913 5.21129 5.30876 5.33814 5.39950 5.48702 5.74525 5.89385 6.33048 6.37432 6.91947 7.10222 7.15501 7.81800 8.44790 9.25241 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.003518 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.264123 B = 7957.723378 C = 9162.519391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.139 4.139 4 C 0.070 3.930 5 N -0.370 5.370 6 O 0.091 5.909 7 C 0.012 3.988 8 C -0.274 4.274 9 C 0.616 3.384 10 O -0.564 6.564 11 N -0.614 5.614 12 C 0.111 3.889 13 C -0.112 4.112 14 C -0.073 4.073 15 C -0.112 4.112 16 C 0.150 3.850 17 N -0.624 5.624 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.058 4.058 21 N -0.941 5.941 22 Si 0.970 3.030 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.148 3.852 27 C 0.106 3.894 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.100 0.900 42 H -0.002 1.002 43 H 0.069 0.931 44 H 0.247 0.753 45 H 0.021 0.979 46 H 0.008 0.992 47 H 0.113 0.887 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 -0.786 -10.369 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 C -0.196 4.196 4 C -0.094 4.094 5 N -0.078 5.078 6 O 0.034 5.966 7 C -0.070 4.070 8 C -0.281 4.281 9 C 0.406 3.594 10 O -0.445 6.445 11 N -0.346 5.346 12 C -0.011 4.011 13 C -0.150 4.150 14 C -0.074 4.074 15 C -0.151 4.151 16 C 0.025 3.975 17 N -0.351 5.351 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.251 4.251 21 N -0.591 5.591 22 Si 0.799 3.201 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.023 3.977 27 C -0.016 4.016 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.270 0.730 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.016 0.984 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.039 0.961 46 H 0.026 0.974 47 H 0.131 0.869 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.572 0.392 -10.170 18.603 hybrid contribution 1.574 0.222 0.402 1.639 sum -13.999 0.615 -9.768 17.081 Atomic orbital electron populations 1.21763 0.91958 1.02182 1.03310 1.19871 0.97451 0.95943 0.91392 1.21800 1.00601 0.93843 1.03394 1.25161 0.96181 0.93692 0.94321 1.73598 1.17622 1.14585 1.01949 1.84583 1.48552 1.29534 1.33937 1.27499 0.93901 0.93728 0.91848 1.22300 1.09350 1.02025 0.94451 1.16418 0.78026 0.78333 0.86584 1.90729 1.62216 1.68750 1.22829 1.48911 1.42720 1.30630 1.12363 1.22587 0.93168 0.92192 0.93108 1.22474 0.95730 1.03849 0.92964 1.21442 0.93434 0.95923 0.96606 1.22859 1.00779 0.95679 0.95767 1.21847 0.95895 0.86757 0.92982 1.44933 1.43246 1.26827 1.20049 1.19300 1.12065 1.04097 1.01475 0.91167 1.25449 1.02248 0.99259 0.98138 1.70007 1.46195 1.25234 1.17639 0.85281 0.79344 0.77940 0.77528 1.20929 1.21710 1.20670 1.21402 0.93269 0.95252 0.87749 1.22817 0.92178 1.01538 0.85080 0.92418 0.89470 0.92996 0.88374 0.89319 0.92388 0.93717 0.73005 0.90293 0.87988 0.91492 0.87320 0.91193 0.88209 0.98367 0.91332 0.94297 0.96147 0.97401 0.86869 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.18 71.98 0.66 -1.93 16 2 C -0.03 -0.65 3.33 -11.54 -0.04 -0.69 16 3 C -0.14 -2.91 9.18 71.98 0.66 -2.25 16 4 C 0.07 1.93 6.09 45.16 0.28 2.20 16 5 N -0.37 -10.46 12.01 -44.79 -0.54 -11.00 16 6 O 0.09 2.41 11.06 77.03 0.85 3.26 16 7 C 0.01 0.28 10.73 67.61 0.73 1.01 16 8 C -0.27 -7.50 6.38 -18.74 -0.12 -7.62 16 9 C 0.62 17.81 7.90 86.65 0.68 18.49 16 10 O -0.56 -18.96 15.54 -4.06 -0.06 -19.02 16 11 N -0.61 -14.92 3.33 -812.55 -2.70 -17.62 16 12 C 0.11 2.19 7.09 86.63 0.61 2.80 16 13 C -0.11 -2.36 6.31 31.19 0.20 -2.16 16 14 C -0.07 -1.97 0.79 -51.81 -0.04 -2.01 16 15 C -0.11 -3.26 5.90 31.63 0.19 -3.08 16 16 C 0.15 6.46 5.81 86.91 0.50 6.97 16 17 N -0.62 -29.91 3.42 -692.21 -2.37 -32.28 16 18 C -0.24 -13.07 10.29 84.04 0.86 -12.20 16 19 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 20 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 21 N -0.94 -53.22 10.09 21.65 0.22 -53.00 16 22 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 C 0.15 5.67 6.37 86.18 0.55 6.22 16 27 C 0.11 2.44 4.77 86.05 0.41 2.85 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 2.61 6.33 -2.39 -0.02 2.59 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.25 4.55 5.31 -2.91 -0.02 4.54 16 36 H 0.08 1.68 7.85 -2.39 -0.02 1.66 16 37 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.07 1.56 7.41 -2.39 -0.02 1.54 16 39 H 0.11 1.81 7.62 -2.39 -0.02 1.79 16 40 H 0.07 2.03 7.90 -2.38 -0.02 2.01 16 41 H 0.10 2.21 7.65 -2.39 -0.02 2.19 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.07 3.51 5.88 -2.39 -0.01 3.50 16 44 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 45 H 0.02 0.81 7.48 -2.39 -0.02 0.79 16 46 H 0.01 0.32 7.63 -2.38 -0.02 0.31 16 47 H 0.11 1.95 7.59 -2.39 -0.02 1.93 16 48 H 0.08 1.96 4.57 -2.39 -0.01 1.95 16 Total: -1.00 -68.85 376.42 5.00 -63.85 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.97 Total: 13.20 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 6.60 Total: 5.91 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.39 Total: -113.90 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.79 Total: -15.77 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -68.85 5.00 -63.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041351547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.338 kcal (2) G-P(sol) polarization free energy of solvation -68.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds