Wall clock time and date at job start Tue Mar 31 2020 17:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47357 * 2 1 4 4 C 1.50704 * 109.47528 * 119.99981 * 2 1 3 5 5 O 1.33499 * 126.82721 * 300.00722 * 4 2 1 6 6 N 1.20653 * 113.15467 * 179.97438 * 5 4 2 7 7 C 1.30017 * 112.30137 * 359.73630 * 6 5 4 8 8 C 1.37356 * 126.82855 * 119.99485 * 4 2 1 9 9 C 1.47394 * 128.56926 * 359.96986 * 8 4 2 10 10 O 1.21613 * 119.99682 * 353.41987 * 9 8 4 11 11 N 1.34773 * 120.00448 * 173.41099 * 9 8 4 12 12 C 1.48260 * 127.73965 * 173.95427 * 11 9 8 13 13 C 1.54708 * 104.66683 * 141.19275 * 12 11 9 14 14 C 1.53038 * 104.47561 * 23.67339 * 13 12 11 15 15 C 1.53886 * 111.37504 * 121.00955 * 14 13 12 16 16 C 1.55138 * 101.45249 * 154.99414 * 15 14 13 17 17 N 1.47536 * 105.06879 * 324.20826 * 16 15 14 18 18 C 1.36945 * 125.67487 * 203.97418 * 17 16 15 19 19 H 1.07994 * 120.00304 * 180.02562 * 18 17 16 20 20 C 1.38815 * 119.99356 * 0.02562 * 18 17 16 21 21 N 1.31612 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99651 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46871 * 60.00003 * 22 20 18 24 24 H 1.48496 * 109.47135 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46977 * 300.00362 * 22 20 18 26 26 C 1.47597 * 108.52195 * 23.93443 * 17 16 15 27 27 C 1.48451 * 127.73484 * 353.96391 * 11 9 8 28 28 H 1.08999 * 109.47095 * 299.99879 * 1 2 3 29 29 H 1.08995 * 109.46707 * 59.99965 * 1 2 3 30 30 H 1.08995 * 109.46736 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47373 * 240.00141 * 2 1 3 32 32 H 1.08995 * 109.47255 * 300.00264 * 3 2 1 33 33 H 1.08999 * 109.46919 * 60.00013 * 3 2 1 34 34 H 1.08998 * 109.47306 * 179.97438 * 3 2 1 35 35 H 1.08000 * 127.33133 * 180.27400 * 7 6 5 36 36 H 1.09004 * 110.39416 * 22.39841 * 12 11 9 37 37 H 1.09000 * 110.49907 * 260.04609 * 12 11 9 38 38 H 1.08999 * 110.44061 * 264.91996 * 13 12 11 39 39 H 1.09005 * 110.53668 * 142.47169 * 13 12 11 40 40 H 1.08994 * 111.02629 * 36.95237 * 15 14 13 41 41 H 1.09004 * 111.06126 * 273.05287 * 15 14 13 42 42 H 1.09005 * 110.34212 * 83.13074 * 16 15 14 43 43 H 1.09003 * 110.34150 * 205.27711 * 16 15 14 44 44 H 0.96998 * 119.99945 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.94872 * 238.66283 * 26 17 16 46 46 H 1.09000 * 109.96683 * 117.41398 * 26 17 16 47 47 H 1.09008 * 110.46648 * 99.68869 * 27 11 9 48 48 H 1.09004 * 110.46199 * 337.10768 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.7954 -0.3753 2.5008 6 7 2.3203 -1.1183 3.2933 7 6 2.9866 -2.0706 2.7104 8 6 2.8251 -1.8315 1.2679 9 6 3.3730 -2.6077 0.1410 10 8 3.0383 -2.3445 -0.9982 11 7 4.2450 -3.6088 0.3729 12 6 4.8031 -4.5713 -0.6070 13 6 6.2798 -4.7511 -0.1821 14 6 6.2990 -4.3775 1.3019 15 6 6.8035 -5.5454 2.1677 16 6 7.3490 -4.7942 3.4107 17 7 7.9281 -3.5452 2.8804 18 6 8.9033 -2.7974 3.4847 19 1 9.2614 -1.8943 3.0131 20 6 9.4315 -3.2004 4.7035 21 7 8.9955 -4.3013 5.2780 22 14 10.7613 -2.1800 5.5283 23 1 10.2428 -0.8145 5.7959 24 1 11.1539 -2.8208 6.8091 25 1 11.9446 -2.0940 4.6352 26 6 7.2804 -3.2389 1.5900 27 6 4.8618 -3.9949 1.6668 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 3.5421 -2.8662 3.1844 36 1 4.7451 -4.1629 -1.6159 37 1 4.2734 -5.5224 -0.5519 38 1 6.9240 -4.0811 -0.7515 39 1 6.5935 -5.7861 -0.3181 40 1 7.5986 -6.0927 1.6614 41 1 5.9856 -6.2121 2.4413 42 1 6.5385 -4.5712 4.1046 43 1 8.1176 -5.3882 3.9053 44 1 9.3649 -4.5831 6.1295 45 1 8.0305 -3.1853 0.8008 46 1 6.7433 -2.2929 1.6583 47 1 4.3383 -4.8477 2.0992 48 1 4.8557 -3.1523 2.3584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041769293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:04 Heat of formation + Delta-G solvation = 42.842404 kcal Electronic energy + Delta-G solvation = -29950.732415 eV Core-core repulsion = 26009.281040 eV Total energy + Delta-G solvation = -3941.451375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.08818 -41.47697 -39.77012 -37.33077 -36.81377 -35.02101 -34.38553 -32.37647 -31.78951 -30.79589 -29.56983 -28.11222 -27.59337 -26.60629 -25.10541 -24.67400 -23.24600 -22.18990 -22.02561 -20.58482 -19.90482 -18.89153 -18.84098 -18.71323 -17.58461 -16.92319 -16.81691 -16.74991 -16.06343 -16.03694 -15.53191 -15.31836 -15.09799 -14.81601 -14.70926 -14.23123 -14.15709 -13.85733 -13.62958 -13.24292 -13.08948 -13.06307 -12.93461 -12.88285 -12.73094 -12.62516 -12.45664 -12.43550 -12.27671 -12.05963 -11.90131 -11.81362 -11.59852 -11.47637 -11.39650 -11.25474 -11.05638 -10.72169 -10.63081 -9.81168 -8.87441 -7.77727 -5.21041 -0.07410 0.64312 1.44954 1.46898 1.53348 1.57863 1.90785 2.02413 2.48114 3.04547 3.15529 3.29606 3.37241 3.52573 3.54210 3.65248 3.73036 3.87876 3.99541 4.05495 4.19211 4.26180 4.28776 4.37450 4.47431 4.57362 4.66035 4.70256 4.71161 4.75333 4.80898 4.83161 4.87061 4.89184 4.91079 5.08329 5.08463 5.11381 5.16557 5.28137 5.31399 5.32766 5.38549 5.45469 5.69608 5.85451 6.33043 6.33701 6.90564 7.05500 7.12095 7.78543 8.42054 9.22900 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.003547 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.016387 B = 7892.437639 C = 9080.567690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.146 4.146 4 C 0.063 3.937 5 O 0.096 5.904 6 N -0.374 5.374 7 C 0.019 3.981 8 C -0.279 4.279 9 C 0.620 3.380 10 O -0.561 6.561 11 N -0.613 5.613 12 C 0.110 3.890 13 C -0.111 4.111 14 C -0.074 4.074 15 C -0.112 4.112 16 C 0.151 3.849 17 N -0.625 5.625 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.060 4.060 21 N -0.943 5.943 22 Si 0.973 3.027 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.149 3.851 27 C 0.111 3.889 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.214 0.786 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.096 0.904 42 H -0.009 1.009 43 H 0.070 0.930 44 H 0.247 0.753 45 H 0.024 0.976 46 H 0.005 0.995 47 H 0.103 0.897 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 1.722 -12.916 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.002 4.002 5 O 0.037 5.963 6 N -0.080 5.080 7 C -0.163 4.163 8 C -0.286 4.286 9 C 0.410 3.590 10 O -0.443 6.443 11 N -0.344 5.344 12 C -0.011 4.011 13 C -0.149 4.149 14 C -0.075 4.075 15 C -0.151 4.151 16 C 0.026 3.974 17 N -0.351 5.351 18 C -0.370 4.370 19 H 0.090 0.910 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.801 3.199 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.024 3.976 27 C -0.012 4.012 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.230 0.770 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.009 0.991 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.023 0.977 47 H 0.121 0.879 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.557 2.298 -12.078 20.623 hybrid contribution 1.479 0.190 0.554 1.591 sum -15.078 2.488 -11.524 19.140 Atomic orbital electron populations 1.21856 0.90901 1.02781 1.04383 1.20358 0.98411 0.96738 0.89118 1.21893 1.00946 0.93056 1.04471 1.25423 0.93398 0.93384 0.87967 1.84536 1.55363 1.43677 1.12690 1.73677 1.12731 1.04974 1.16628 1.27034 0.99355 0.99435 0.90457 1.22045 1.10053 1.02472 0.94034 1.16338 0.77928 0.78385 0.86376 1.90715 1.62191 1.68633 1.22720 1.48859 1.42908 1.30639 1.12022 1.22594 0.93159 0.92370 0.92958 1.22474 0.95855 1.03949 0.92661 1.21462 0.93361 0.95882 0.96802 1.22851 1.00736 0.95665 0.95830 1.21824 0.95651 0.86923 0.92978 1.44945 1.43025 1.26519 1.20599 1.19330 1.11842 1.04074 1.01803 0.91012 1.25505 1.02373 0.99240 0.98193 1.70018 1.46170 1.24859 1.18212 0.85238 0.79266 0.77780 0.77570 1.20975 1.21663 1.20344 1.21397 0.93239 0.95107 0.87818 1.22725 0.92055 1.01030 0.85361 0.91249 0.88774 0.92745 0.86764 0.88606 0.91234 0.93474 0.77012 0.89850 0.88188 0.91211 0.87286 0.90858 0.88560 0.99109 0.91174 0.94297 0.95757 0.97704 0.87895 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.18 71.98 0.66 -1.36 16 2 C -0.03 -0.52 3.28 -11.54 -0.04 -0.56 16 3 C -0.15 -2.35 9.18 71.98 0.66 -1.69 16 4 C 0.06 1.60 6.06 25.48 0.15 1.75 16 5 O 0.10 2.60 11.06 76.94 0.85 3.45 16 6 N -0.37 -11.37 12.01 -54.19 -0.65 -12.02 16 7 C 0.02 0.55 10.70 87.29 0.93 1.49 16 8 C -0.28 -7.92 6.34 -18.75 -0.12 -8.04 16 9 C 0.62 18.21 7.90 86.65 0.68 18.90 16 10 O -0.56 -18.07 15.14 -4.07 -0.06 -18.13 16 11 N -0.61 -15.99 3.33 -812.52 -2.71 -18.70 16 12 C 0.11 2.29 7.09 86.62 0.61 2.91 16 13 C -0.11 -2.47 6.31 31.19 0.20 -2.27 16 14 C -0.07 -2.17 0.79 -51.80 -0.04 -2.21 16 15 C -0.11 -3.52 5.90 31.63 0.19 -3.34 16 16 C 0.15 6.91 5.81 86.91 0.50 7.41 16 17 N -0.62 -31.26 3.42 -692.22 -2.37 -33.63 16 18 C -0.24 -13.53 10.29 84.03 0.86 -12.67 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 21 N -0.94 -54.98 10.09 21.65 0.22 -54.76 16 22 Si 0.97 45.69 29.55 68.60 2.03 47.71 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.15 6.00 6.37 86.19 0.55 6.55 16 27 C 0.11 2.94 4.83 86.05 0.42 3.36 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 2.58 5.92 -2.38 -0.01 2.56 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.21 5.66 5.58 -2.91 -0.02 5.64 16 36 H 0.08 1.77 7.85 -2.39 -0.02 1.75 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.66 7.41 -2.39 -0.02 1.64 16 39 H 0.11 1.92 7.62 -2.38 -0.02 1.90 16 40 H 0.07 2.24 7.90 -2.39 -0.02 2.22 16 41 H 0.10 2.40 7.65 -2.39 -0.02 2.38 16 42 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 43 H 0.07 3.74 5.88 -2.39 -0.01 3.73 16 44 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 45 H 0.02 0.99 7.49 -2.38 -0.02 0.97 16 46 H 0.01 0.21 7.63 -2.39 -0.02 0.20 16 47 H 0.10 2.26 7.59 -2.38 -0.02 2.24 16 48 H 0.07 2.21 4.48 -2.38 -0.01 2.20 16 Total: -1.00 -69.52 375.69 4.98 -64.55 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.97 Total: 14.20 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.69 Total: 7.33 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -5.50 Total: -119.11 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.79 Total: -14.68 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.52 4.98 -64.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041769293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.388 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds