Wall clock time and date at job start Tue Mar 31 2020 17:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47024 * 2 1 4 4 C 1.50701 * 109.47260 * 180.02562 * 3 2 1 5 5 N 1.29935 * 125.37807 * 89.99417 * 4 3 2 6 6 C 1.36072 * 108.47408 * 180.02562 * 5 4 3 7 7 C 1.47414 * 126.44513 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99777 * 173.02091 * 7 6 5 9 9 N 1.34775 * 120.00354 * 353.01889 * 7 6 5 10 10 C 1.46603 * 119.75313 * 172.89509 * 9 7 6 11 11 C 1.53890 * 110.70748 * 132.27896 * 10 9 7 12 12 C 1.51968 * 107.28868 * 51.81068 * 11 10 9 13 13 H 1.08994 * 111.56312 * 56.83562 * 12 11 10 14 14 C 1.53697 * 115.01424 * 184.54154 * 12 11 10 15 15 C 1.55294 * 101.84887 * 153.49014 * 14 12 11 16 16 N 1.48156 * 107.04734 * 337.53712 * 15 14 12 17 17 C 1.36932 * 126.39694 * 175.02349 * 16 15 14 18 18 H 1.08005 * 119.99709 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00513 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99815 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00412 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46983 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47268 * 119.99980 * 21 19 17 24 24 H 1.48501 * 109.47127 * 240.00545 * 21 19 17 25 25 C 1.45511 * 107.20084 * 354.99790 * 16 15 14 26 26 H 1.08999 * 109.57101 * 273.36731 * 25 16 15 27 27 C 1.47894 * 120.26590 * 353.36306 * 9 7 6 28 28 C 1.36092 * 107.10240 * 0.23192 * 6 5 4 29 29 O 1.34055 * 125.37470 * 270.04031 * 4 3 2 30 30 H 1.09003 * 109.47260 * 60.00173 * 1 2 3 31 31 H 1.09008 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47388 * 299.99868 * 1 2 3 33 33 H 1.08998 * 109.47388 * 240.00132 * 2 1 3 34 34 H 1.09003 * 109.47260 * 119.99827 * 2 1 3 35 35 H 1.08998 * 109.46931 * 59.99852 * 3 2 1 36 36 H 1.09003 * 109.46961 * 300.00010 * 3 2 1 37 37 H 1.08999 * 109.22765 * 11.95747 * 10 9 7 38 38 H 1.08997 * 109.22573 * 252.59508 * 10 9 7 39 39 H 1.08996 * 109.88982 * 292.36169 * 11 10 9 40 40 H 1.09000 * 109.95125 * 171.29361 * 11 10 9 41 41 H 1.09009 * 110.95432 * 35.34408 * 14 12 11 42 42 H 1.08996 * 110.95904 * 271.64628 * 14 12 11 43 43 H 1.09001 * 109.91814 * 96.88527 * 15 14 12 44 44 H 1.09003 * 109.92033 * 217.98121 * 15 14 12 45 45 H 0.96995 * 120.00199 * 180.02562 * 20 19 17 46 46 H 1.08996 * 110.46323 * 112.42467 * 27 9 7 47 47 H 1.08999 * 109.63148 * 350.88326 * 27 9 7 48 48 H 1.08003 * 126.52430 * 179.77290 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2988 1.4427 -1.0604 6 6 5.6009 1.4422 -0.6653 7 6 6.7832 1.4415 -1.5457 8 8 7.8954 1.5690 -1.0704 9 7 6.6318 1.2996 -2.8774 10 6 7.7903 1.4554 -3.7621 11 6 7.8643 0.2958 -4.7711 12 6 6.5050 0.1944 -5.4431 13 1 6.2216 1.1338 -5.9175 14 6 6.3468 -0.9861 -6.4146 15 6 4.8142 -1.2329 -6.3695 16 7 4.3202 -0.6649 -5.0934 17 6 3.0133 -0.5810 -4.6934 18 1 2.7685 -0.1443 -3.7364 19 6 2.0031 -1.0571 -5.5177 20 7 2.3014 -1.5898 -6.6838 21 14 0.2202 -0.9420 -4.9723 22 1 0.1528 -0.3065 -3.6318 23 1 -0.5437 -0.1225 -5.9470 24 1 -0.3657 -2.3048 -4.9045 25 6 5.4832 -0.2135 -4.3444 26 1 5.8860 -1.0417 -3.7614 27 6 5.3012 0.9980 -3.4483 28 6 5.6062 1.4365 0.6956 29 8 4.3235 1.4417 1.0921 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 8.7006 1.4684 -3.1627 38 1 7.7043 2.3974 -4.3035 39 1 8.0912 -0.6347 -4.2507 40 1 8.6325 0.5002 -5.5169 41 1 6.8930 -1.8597 -6.0588 42 1 6.6680 -0.7102 -7.4189 43 1 4.3327 -0.7326 -7.2097 44 1 4.6091 -2.3028 -6.4074 45 1 1.5955 -1.9222 -7.2600 46 1 4.9364 1.8432 -4.0318 47 1 4.6018 0.7671 -2.6449 48 1 6.4766 1.4311 1.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042314004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:22 Heat of formation + Delta-G solvation = 0.630399 kcal Electronic energy + Delta-G solvation = -30403.355136 eV Core-core repulsion = 26460.073311 eV Total energy + Delta-G solvation = -3943.281825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.52765 -41.39535 -39.70938 -36.78535 -36.42940 -35.83590 -34.60683 -32.98089 -31.70766 -30.82145 -30.12088 -28.16638 -26.75968 -25.81692 -24.63538 -23.51436 -23.00820 -22.13568 -21.68323 -21.33525 -20.47291 -18.69240 -18.57402 -17.93053 -17.62214 -17.01571 -16.74090 -16.31744 -15.99753 -15.81898 -15.77958 -15.65658 -15.13312 -14.83130 -14.64943 -14.59118 -14.22065 -13.94231 -13.75019 -13.50145 -13.12692 -13.07620 -13.02465 -12.78974 -12.75055 -12.49915 -12.45522 -12.19129 -12.09466 -12.00262 -11.87133 -11.66794 -11.63895 -11.52902 -11.40161 -11.30803 -10.70468 -10.48369 -10.12023 -9.69828 -8.87223 -7.79843 -5.14991 0.03880 0.87921 1.47545 1.48581 1.53845 1.59472 1.83866 2.14574 2.53810 2.76561 3.35236 3.39594 3.57709 3.74881 3.85486 3.93514 4.00689 4.01748 4.06945 4.23074 4.29224 4.34286 4.36286 4.49079 4.50030 4.57405 4.62992 4.68245 4.72589 4.75669 4.82695 4.85615 4.87970 4.92925 5.07042 5.11959 5.14424 5.18632 5.27596 5.31288 5.40191 5.49809 5.54452 5.64237 5.69257 5.79498 6.16750 6.23414 6.48109 6.95619 7.12516 7.81391 8.49542 9.32130 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007643 B = 0.006724 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.741705 B = 4162.983034 C = 7604.993549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.023 4.023 4 C 0.204 3.796 5 N -0.480 5.480 6 C -0.106 4.106 7 C 0.598 3.402 8 O -0.567 6.567 9 N -0.590 5.590 10 C 0.107 3.893 11 C -0.105 4.105 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.123 4.123 15 C 0.181 3.819 16 N -0.608 5.608 17 C -0.222 4.222 18 H 0.085 0.915 19 C -0.068 4.068 20 N -0.955 5.955 21 Si 0.966 3.034 22 H -0.250 1.250 23 H -0.296 1.296 24 H -0.298 1.298 25 C 0.150 3.850 26 H 0.003 0.997 27 C 0.102 3.898 28 C 0.033 3.967 29 O -0.189 6.189 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.023 0.977 44 H 0.000 1.000 45 H 0.244 0.756 46 H 0.055 0.945 47 H 0.128 0.872 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 7.295 14.098 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.060 4.060 4 C -0.005 4.005 5 N -0.210 5.210 6 C -0.224 4.224 7 C 0.386 3.614 8 O -0.448 6.448 9 N -0.321 5.321 10 C -0.015 4.015 11 C -0.143 4.143 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.161 4.161 15 C 0.057 3.943 16 N -0.333 5.333 17 C -0.351 4.351 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.605 5.605 21 Si 0.794 3.206 22 H -0.173 1.173 23 H -0.223 1.223 24 H -0.225 1.225 25 C 0.042 3.958 26 H 0.021 0.979 27 C -0.021 4.021 28 C -0.041 4.041 29 O -0.075 6.075 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.018 0.982 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.145 0.855 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 4.863 7.325 13.657 16.242 hybrid contribution -0.838 -0.458 0.071 0.958 sum 4.025 6.866 13.728 15.868 Atomic orbital electron populations 1.21742 0.93492 1.02564 1.02845 1.21517 0.97627 0.94627 1.02286 1.20451 0.78787 0.99804 1.07005 1.27073 0.97344 0.98076 0.77968 1.70748 1.01296 1.19007 1.29956 1.21810 0.91870 1.14632 0.94089 1.17037 0.86400 0.76118 0.81798 1.90741 1.25216 1.53520 1.75282 1.48133 1.10662 1.67776 1.05525 1.21810 0.88376 0.99107 0.92188 1.21724 0.96548 0.98185 0.97871 1.22243 0.95671 0.98350 0.95835 0.90771 1.22606 0.95810 0.97844 0.99851 1.21334 0.90295 0.94993 0.87706 1.44417 1.01324 1.69905 1.17684 1.19414 0.81857 1.32468 1.01368 0.89749 1.25595 1.01893 1.01576 0.97007 1.70177 1.31417 1.47326 1.11590 0.85166 0.80112 0.76747 0.78539 1.17342 1.22339 1.22545 1.21100 0.88352 0.93322 0.93042 0.97930 1.22379 0.83462 0.96585 0.99714 1.25789 0.85589 0.97913 0.94781 1.84417 1.16525 1.68991 1.37547 0.93107 0.92400 0.89892 0.93874 0.90521 0.85213 0.87537 0.88663 0.90343 0.91979 0.87293 0.91468 0.89799 0.95888 0.98154 0.94695 0.92617 0.85471 0.72149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.12 -2.63 5.92 30.60 0.18 -2.45 16 3 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 4 C 0.20 5.24 7.56 88.39 0.67 5.91 16 5 N -0.48 -15.52 7.80 -293.03 -2.29 -17.80 16 6 C -0.11 -3.27 6.66 40.40 0.27 -3.00 16 7 C 0.60 20.33 7.66 86.66 0.66 20.99 16 8 O -0.57 -20.04 16.24 -4.10 -0.07 -20.11 16 9 N -0.59 -20.02 3.00 -822.42 -2.47 -22.49 16 10 C 0.11 2.98 6.35 86.66 0.55 3.53 16 11 C -0.11 -2.83 5.72 30.55 0.17 -2.66 16 12 C -0.10 -3.53 2.60 -10.04 -0.03 -3.55 16 13 H 0.07 2.65 8.12 -2.39 -0.02 2.63 16 14 C -0.12 -4.54 6.54 31.62 0.21 -4.34 16 15 C 0.18 9.11 5.45 86.85 0.47 9.58 16 16 N -0.61 -31.44 3.35 -669.09 -2.24 -33.68 16 17 C -0.22 -12.30 9.88 84.03 0.83 -11.47 16 18 H 0.08 4.51 7.43 -2.91 -0.02 4.49 16 19 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 20 N -0.96 -57.86 10.44 21.65 0.23 -57.64 16 21 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 22 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 C 0.15 6.37 2.79 45.63 0.13 6.50 16 26 H 0.00 0.15 7.93 -2.39 -0.02 0.13 16 27 C 0.10 3.95 5.30 85.71 0.45 4.41 16 28 C 0.03 0.77 11.95 67.32 0.80 1.58 16 29 O -0.19 -4.28 10.73 0.33 0.00 -4.28 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.10 2.58 6.92 -2.39 -0.02 2.56 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.77 7.98 -2.39 -0.02 1.75 16 40 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.33 8.12 -2.38 -0.02 2.31 16 42 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.02 1.28 7.21 -2.39 -0.02 1.26 16 44 H 0.00 0.01 7.77 -2.39 -0.02 -0.01 16 45 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.13 5.25 3.94 -16.26 -0.06 5.19 16 48 H 0.26 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -72.31 379.41 2.82 -69.48 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.90 Total: 20.22 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 6.73 Total: 19.30 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -6.77 Total: -131.61 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.39 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.31 2.82 -69.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042314004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.115 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds