Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47234 * 2 1 4 4 O 1.21290 * 120.00021 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00229 * 179.97438 * 3 2 1 6 6 C 1.39948 * 120.00302 * 185.23017 * 5 3 2 7 7 C 1.38993 * 120.00020 * 214.84049 * 6 5 3 8 8 C 1.38212 * 120.22468 * 180.02562 * 7 6 5 9 9 C 1.38013 * 120.22246 * 359.97438 * 8 7 6 10 10 C 1.39581 * 119.99955 * 0.02562 * 9 8 7 11 11 C 1.47854 * 120.11302 * 180.27667 * 10 9 8 12 12 O 1.21554 * 119.99811 * 144.82075 * 11 10 9 13 13 N 1.34773 * 120.00099 * 324.82355 * 11 10 9 14 14 C 1.46496 * 120.00275 * 354.09951 * 13 11 10 15 15 C 1.46504 * 119.99930 * 174.10296 * 13 11 10 16 16 C 1.53002 * 109.46851 * 89.99754 * 15 13 11 17 17 H 1.09000 * 109.47302 * 294.99877 * 16 15 13 18 18 C 1.53003 * 109.47071 * 174.99999 * 16 15 13 19 19 N 1.46502 * 109.47335 * 55.00159 * 16 15 13 20 20 C 1.36937 * 119.99956 * 204.99647 * 19 16 15 21 21 H 1.07998 * 119.99850 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99570 * 179.97438 * 20 19 16 23 23 N 1.31627 * 119.99517 * 180.02562 * 22 20 19 24 24 Si 1.86788 * 120.00374 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.47212 * 89.99628 * 24 22 20 26 26 H 1.48503 * 109.47228 * 209.99713 * 24 22 20 27 27 H 1.48500 * 109.47281 * 329.99843 * 24 22 20 28 28 C 1.38592 * 120.00265 * 34.85706 * 6 5 3 29 29 H 1.08995 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46636 * 300.00034 * 1 2 3 31 31 H 1.09002 * 109.47028 * 59.99330 * 1 2 3 32 32 H 1.09000 * 109.46636 * 239.99966 * 2 1 3 33 33 H 1.09002 * 109.47028 * 120.00670 * 2 1 3 34 34 H 0.97007 * 119.99482 * 5.22807 * 5 3 2 35 35 H 1.08004 * 119.88674 * 359.97438 * 7 6 5 36 36 H 1.08002 * 119.88904 * 180.02562 * 8 7 6 37 37 H 1.08004 * 120.00515 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47141 * 94.68123 * 14 13 11 39 39 H 1.09000 * 109.47568 * 214.69074 * 14 13 11 40 40 H 1.09004 * 109.46642 * 334.69121 * 14 13 11 41 41 H 1.08994 * 109.46972 * 209.99590 * 15 13 11 42 42 H 1.08998 * 109.47352 * 330.00117 * 15 13 11 43 43 H 1.08998 * 109.47231 * 59.99417 * 18 16 15 44 44 H 1.08997 * 109.47591 * 180.02562 * 18 16 15 45 45 H 1.09000 * 109.46958 * 300.00088 * 18 16 15 46 46 H 0.97001 * 119.99577 * 24.99414 * 19 16 15 47 47 H 0.97004 * 119.99683 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.10683 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8248 2.9816 0.1110 7 6 4.9769 3.3685 -0.5636 8 6 5.4429 4.6654 -0.4573 9 6 4.7672 5.5850 0.3189 10 6 3.6093 5.2064 1.0003 11 6 2.8801 6.1912 1.8277 12 8 1.6670 6.1505 1.8930 13 7 3.5603 7.1340 2.5094 14 6 5.0248 7.1055 2.5357 15 6 2.8353 8.1874 3.2243 16 6 2.5456 7.7267 4.6543 17 1 1.8668 6.8743 4.6310 18 6 1.9001 8.8714 5.4379 19 7 3.7987 7.3355 5.3046 20 6 3.7818 6.4414 6.3416 21 1 2.8448 6.0243 6.6798 22 6 4.9693 6.0703 6.9574 23 7 4.9531 5.2104 7.9539 24 14 6.5900 6.7912 6.3721 25 1 6.8781 8.0380 7.1256 26 1 7.6804 5.8099 6.6032 27 1 6.5000 7.0988 4.9221 28 6 3.1393 3.8974 0.8933 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9872 0.9331 -0.0757 35 1 5.5101 2.6532 -1.1721 36 1 6.3384 4.9603 -0.9841 37 1 5.1343 6.5976 0.3991 38 1 5.4150 7.7545 1.7516 39 1 5.3777 7.4551 3.5059 40 1 5.3713 6.0856 2.3689 41 1 3.4417 9.0926 3.2500 42 1 1.8957 8.3938 2.7118 43 1 0.9678 9.1626 4.9540 44 1 1.6941 8.5435 6.4568 45 1 2.5790 9.7239 5.4612 46 1 4.6404 7.7099 5.0006 47 1 5.7828 4.9514 8.3845 48 1 2.2443 3.5985 1.4187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700750983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = -15.351312 kcal Electronic energy + Delta-G solvation = -29221.917352 eV Core-core repulsion = 25277.942508 eV Total energy + Delta-G solvation = -3943.974844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 7.53 seconds Orbital eigenvalues (eV) -40.83226 -39.83851 -38.18639 -36.40805 -35.08320 -34.23766 -33.10740 -32.11669 -31.11478 -29.90948 -29.35489 -26.98488 -26.03092 -25.04449 -23.66108 -22.89556 -22.38152 -20.44318 -20.34276 -19.52376 -17.80914 -17.60894 -17.39956 -16.55214 -16.09416 -15.93516 -15.81536 -15.19975 -14.72895 -14.63074 -14.29332 -13.94288 -13.88859 -13.64421 -13.41487 -13.32431 -12.77086 -12.70065 -12.54260 -12.47284 -12.29219 -12.05368 -12.03002 -11.69917 -11.58894 -11.46429 -11.43560 -11.38030 -10.91272 -10.64980 -10.57701 -10.46364 -10.04174 -9.99633 -9.62712 -9.49757 -8.97489 -8.93378 -8.27049 -8.24836 -7.22460 -5.74082 -3.08649 0.89006 1.24578 2.37700 2.76254 3.04689 3.24027 3.29774 3.35332 3.41980 3.84482 4.36287 4.57600 4.60048 4.74005 4.77576 4.79764 4.94973 5.05930 5.19888 5.23897 5.36638 5.38891 5.43968 5.48196 5.52731 5.55003 5.67026 5.67786 5.72552 5.80026 5.99973 6.02587 6.10292 6.13635 6.18700 6.21765 6.26296 6.27136 6.36667 6.51852 6.74648 6.85231 6.86907 7.11239 7.12994 7.66239 7.91888 8.03938 8.44239 8.46892 9.22934 9.94706 10.15095 11.44805 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.003424 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.359125 B = 8176.717586 C = 8257.301485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.509 6.509 5 N -0.677 5.677 6 C 0.137 3.863 7 C -0.128 4.128 8 C -0.110 4.110 9 C -0.108 4.108 10 C -0.101 4.101 11 C 0.558 3.442 12 O -0.532 6.532 13 N -0.593 5.593 14 C 0.068 3.932 15 C 0.109 3.891 16 C 0.159 3.841 17 H 0.061 0.939 18 C -0.162 4.162 19 N -0.744 5.744 20 C -0.233 4.233 21 H 0.089 0.911 22 C 0.001 3.999 23 N -0.936 5.936 24 Si 0.880 3.120 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.273 1.273 28 C -0.063 4.063 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.411 0.589 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.357 0.643 47 H 0.258 0.742 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -5.995 -21.099 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.293 3.707 4 O -0.382 6.382 5 N -0.323 5.323 6 C 0.043 3.957 7 C -0.148 4.148 8 C -0.128 4.128 9 C -0.127 4.127 10 C -0.105 4.105 11 C 0.346 3.654 12 O -0.409 6.409 13 N -0.324 5.324 14 C -0.075 4.075 15 C -0.014 4.014 16 C 0.049 3.951 17 H 0.080 0.920 18 C -0.223 4.223 19 N -0.389 5.389 20 C -0.363 4.363 21 H 0.107 0.893 22 C -0.194 4.194 23 N -0.585 5.585 24 Si 0.711 3.289 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.200 1.200 28 C -0.083 4.083 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.247 0.753 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.191 0.809 47 H 0.068 0.932 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.069 -5.565 -20.861 21.591 hybrid contribution 1.856 0.013 -0.176 1.864 sum 1.925 -5.552 -21.037 21.843 Atomic orbital electron populations 1.21559 0.92606 1.01820 1.03759 1.21639 0.99070 0.92804 1.04597 1.21089 0.81571 0.92535 0.75497 1.90812 1.54823 1.46262 1.46335 1.43571 1.08010 1.06957 1.73776 1.17557 0.95617 0.85126 0.97411 1.21003 0.97014 0.97097 0.99705 1.20850 1.00148 0.92619 0.99211 1.21597 0.93810 1.00622 0.96635 1.19815 0.96275 0.94421 0.99999 1.18233 0.87021 0.80719 0.79387 1.90778 1.13535 1.72176 1.64419 1.47464 1.06963 1.28201 1.49760 1.22355 0.79658 1.02727 1.02748 1.21902 0.97200 0.88805 0.93494 1.20640 0.89413 0.96051 0.89001 0.92048 1.22336 0.99054 0.99214 1.01659 1.42818 1.02659 1.53311 1.40077 1.19096 0.95199 1.15926 1.06105 0.89346 1.24653 0.97042 0.99401 0.98287 1.69707 1.26274 1.36742 1.25745 0.86700 0.85311 0.78648 0.78197 1.21289 1.21896 1.19963 1.21151 0.99705 0.91660 0.95823 0.91849 0.91575 0.91891 0.88755 0.88383 0.75328 0.85499 0.85092 0.84672 0.93066 0.89841 0.90433 0.90874 0.89738 0.93923 0.92081 0.93599 0.80883 0.93213 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.82 16 2 C -0.14 -1.01 6.42 -27.88 -0.18 -1.19 16 3 C 0.51 5.83 7.56 -10.99 -0.08 5.74 16 4 O -0.51 -8.39 13.77 5.55 0.08 -8.31 16 5 N -0.68 -6.70 5.34 -9.90 -0.05 -6.75 16 6 C 0.14 1.75 6.25 -83.74 -0.52 1.22 16 7 C -0.13 -1.30 9.96 -39.31 -0.39 -1.69 16 8 C -0.11 -1.12 10.02 -39.67 -0.40 -1.52 16 9 C -0.11 -1.35 7.61 -39.16 -0.30 -1.65 16 10 C -0.10 -1.66 5.16 -104.99 -0.54 -2.20 16 11 C 0.56 10.61 7.36 -12.33 -0.09 10.52 16 12 O -0.53 -11.87 16.46 5.32 0.09 -11.78 16 13 N -0.59 -10.25 2.73 -182.69 -0.50 -10.75 16 14 C 0.07 1.02 8.52 59.84 0.51 1.53 16 15 C 0.11 1.84 5.02 -4.04 -0.02 1.82 16 16 C 0.16 3.23 3.20 -67.93 -0.22 3.01 16 17 H 0.06 1.43 8.08 -51.93 -0.42 1.01 16 18 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 19 N -0.74 -17.41 4.36 -53.42 -0.23 -17.64 16 20 C -0.23 -6.61 10.41 -15.06 -0.16 -6.77 16 21 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 22 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 23 N -0.94 -29.54 13.97 55.49 0.78 -28.77 16 24 Si 0.88 21.37 27.73 -169.99 -4.71 16.66 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.27 -5.82 4.79 56.52 0.27 -5.55 16 28 C -0.06 -1.04 8.21 -38.98 -0.32 -1.36 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 2.37 8.82 -40.82 -0.36 2.01 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.14 1.46 5.50 -52.48 -0.29 1.17 16 38 H 0.05 0.58 7.03 -51.93 -0.36 0.21 16 39 H 0.08 1.42 3.73 -51.93 -0.19 1.23 16 40 H 0.08 1.17 5.78 -51.93 -0.30 0.87 16 41 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 42 H 0.08 1.39 7.51 -51.93 -0.39 1.00 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.36 7.92 3.50 -40.82 -0.14 7.78 16 47 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 48 H 0.14 2.74 6.47 -52.49 -0.34 2.40 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -37.61 385.26 -7.99 -45.61 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.13 Total: 11.90 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.11 Total: 4.03 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.01 Total: -63.91 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.16 Total: -20.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.61 -7.99 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700750983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.256 kcal (2) G-P(sol) polarization free energy of solvation -37.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.53 seconds