Wall clock time and date at job start Tue Mar 31 2020 18:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47234 * 2 1 4 4 O 1.21290 * 120.00021 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00229 * 179.97438 * 3 2 1 6 6 C 1.39948 * 120.00302 * 185.23017 * 5 3 2 7 7 C 1.38993 * 120.00020 * 214.84049 * 6 5 3 8 8 C 1.38212 * 120.22468 * 180.02562 * 7 6 5 9 9 C 1.38013 * 120.22246 * 359.97438 * 8 7 6 10 10 C 1.39581 * 119.99955 * 0.02562 * 9 8 7 11 11 C 1.47854 * 120.11302 * 180.27667 * 10 9 8 12 12 O 1.21554 * 119.99811 * 144.82075 * 11 10 9 13 13 N 1.34773 * 120.00099 * 324.82355 * 11 10 9 14 14 C 1.46496 * 120.00275 * 354.09951 * 13 11 10 15 15 C 1.46504 * 119.99930 * 174.10296 * 13 11 10 16 16 C 1.53002 * 109.46851 * 89.99754 * 15 13 11 17 17 H 1.09000 * 109.47302 * 294.99877 * 16 15 13 18 18 C 1.53003 * 109.47071 * 174.99999 * 16 15 13 19 19 N 1.46502 * 109.47335 * 55.00159 * 16 15 13 20 20 C 1.36937 * 119.99956 * 204.99647 * 19 16 15 21 21 H 1.07998 * 119.99850 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99570 * 179.97438 * 20 19 16 23 23 N 1.31627 * 119.99517 * 180.02562 * 22 20 19 24 24 Si 1.86788 * 120.00374 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.47212 * 89.99628 * 24 22 20 26 26 H 1.48503 * 109.47228 * 209.99713 * 24 22 20 27 27 H 1.48500 * 109.47281 * 329.99843 * 24 22 20 28 28 C 1.38592 * 120.00265 * 34.85706 * 6 5 3 29 29 H 1.08995 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46636 * 300.00034 * 1 2 3 31 31 H 1.09002 * 109.47028 * 59.99330 * 1 2 3 32 32 H 1.09000 * 109.46636 * 239.99966 * 2 1 3 33 33 H 1.09002 * 109.47028 * 120.00670 * 2 1 3 34 34 H 0.97007 * 119.99482 * 5.22807 * 5 3 2 35 35 H 1.08004 * 119.88674 * 359.97438 * 7 6 5 36 36 H 1.08002 * 119.88904 * 180.02562 * 8 7 6 37 37 H 1.08004 * 120.00515 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47141 * 94.68123 * 14 13 11 39 39 H 1.09000 * 109.47568 * 214.69074 * 14 13 11 40 40 H 1.09004 * 109.46642 * 334.69121 * 14 13 11 41 41 H 1.08994 * 109.46972 * 209.99590 * 15 13 11 42 42 H 1.08998 * 109.47352 * 330.00117 * 15 13 11 43 43 H 1.08998 * 109.47231 * 59.99417 * 18 16 15 44 44 H 1.08997 * 109.47591 * 180.02562 * 18 16 15 45 45 H 1.09000 * 109.46958 * 300.00088 * 18 16 15 46 46 H 0.97001 * 119.99577 * 24.99414 * 19 16 15 47 47 H 0.97004 * 119.99683 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.10683 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8248 2.9816 0.1110 7 6 4.9769 3.3685 -0.5636 8 6 5.4429 4.6654 -0.4573 9 6 4.7672 5.5850 0.3189 10 6 3.6093 5.2064 1.0003 11 6 2.8801 6.1912 1.8277 12 8 1.6670 6.1505 1.8930 13 7 3.5603 7.1340 2.5094 14 6 5.0248 7.1055 2.5357 15 6 2.8353 8.1874 3.2243 16 6 2.5456 7.7267 4.6543 17 1 1.8668 6.8743 4.6310 18 6 1.9001 8.8714 5.4379 19 7 3.7987 7.3355 5.3046 20 6 3.7818 6.4414 6.3416 21 1 2.8448 6.0243 6.6798 22 6 4.9693 6.0703 6.9574 23 7 4.9531 5.2104 7.9539 24 14 6.5900 6.7912 6.3721 25 1 6.8781 8.0380 7.1256 26 1 7.6804 5.8099 6.6032 27 1 6.5000 7.0988 4.9221 28 6 3.1393 3.8974 0.8933 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9872 0.9331 -0.0757 35 1 5.5101 2.6532 -1.1721 36 1 6.3384 4.9603 -0.9841 37 1 5.1343 6.5976 0.3991 38 1 5.4150 7.7545 1.7516 39 1 5.3777 7.4551 3.5059 40 1 5.3713 6.0856 2.3689 41 1 3.4417 9.0926 3.2500 42 1 1.8957 8.3938 2.7118 43 1 0.9678 9.1626 4.9540 44 1 1.6941 8.5435 6.4568 45 1 2.5790 9.7239 5.4612 46 1 4.6404 7.7099 5.0006 47 1 5.7828 4.9514 8.3845 48 1 2.2443 3.5985 1.4187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700750983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:56 Heat of formation + Delta-G solvation = -43.447068 kcal Electronic energy + Delta-G solvation = -29223.135675 eV Core-core repulsion = 25277.942508 eV Total energy + Delta-G solvation = -3945.193167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 7.75 seconds Orbital eigenvalues (eV) -41.85429 -41.05600 -39.26978 -38.05767 -36.24876 -35.66716 -34.11279 -33.80545 -32.24522 -31.43669 -30.65869 -28.28042 -27.38030 -25.84919 -25.53562 -24.20887 -23.27954 -22.00515 -21.28895 -20.88213 -19.73301 -18.87322 -18.30101 -17.66163 -17.28174 -17.09667 -16.76550 -16.56897 -16.55935 -15.72271 -15.59486 -15.33463 -15.10574 -14.96665 -14.70815 -14.35216 -14.27646 -14.02677 -13.86953 -13.70292 -13.42667 -13.31610 -13.19327 -12.84422 -12.82240 -12.77270 -12.64691 -12.53593 -12.38820 -12.24471 -12.08447 -11.82791 -11.67550 -11.46617 -11.05443 -10.97259 -10.94946 -10.01580 -9.68861 -9.27190 -9.20005 -8.01034 -5.35540 -0.12067 0.25925 1.32173 1.43839 1.46328 1.50248 1.70791 2.00676 2.08295 2.50166 2.79765 3.29648 3.42022 3.53404 3.67260 3.90293 3.99956 4.02741 4.11313 4.15805 4.21603 4.26460 4.29897 4.43389 4.48539 4.55073 4.59354 4.64256 4.70840 4.79296 4.84536 4.87079 4.92993 4.99853 5.01670 5.17580 5.21327 5.25793 5.28851 5.31466 5.37665 5.42036 5.61537 5.75828 5.93046 6.20324 6.31967 6.37862 7.06797 7.08489 7.12346 7.79603 8.05840 9.21366 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.003424 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.359125 B = 8176.717586 C = 8257.301485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.495 3.505 4 O -0.570 6.570 5 N -0.663 5.663 6 C 0.126 3.874 7 C -0.110 4.110 8 C -0.096 4.096 9 C -0.103 4.103 10 C -0.132 4.132 11 C 0.547 3.453 12 O -0.587 6.587 13 N -0.593 5.593 14 C 0.062 3.938 15 C 0.114 3.886 16 C 0.155 3.845 17 H 0.012 0.988 18 C -0.152 4.152 19 N -0.738 5.738 20 C -0.230 4.230 21 H 0.035 0.965 22 C -0.069 4.069 23 N -0.991 5.991 24 Si 0.956 3.044 25 H -0.280 1.280 26 H -0.298 1.298 27 H -0.223 1.223 28 C -0.100 4.100 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.433 0.567 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.369 0.631 47 H 0.257 0.743 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -5.261 -24.876 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.285 3.715 4 O -0.448 6.448 5 N -0.310 5.310 6 C 0.032 3.968 7 C -0.130 4.130 8 C -0.114 4.114 9 C -0.122 4.122 10 C -0.136 4.136 11 C 0.337 3.663 12 O -0.468 6.468 13 N -0.323 5.323 14 C -0.079 4.079 15 C -0.009 4.009 16 C 0.046 3.954 17 H 0.030 0.970 18 C -0.212 4.212 19 N -0.384 5.384 20 C -0.361 4.361 21 H 0.053 0.947 22 C -0.260 4.260 23 N -0.642 5.642 24 Si 0.782 3.218 25 H -0.206 1.206 26 H -0.225 1.225 27 H -0.147 1.147 28 C -0.122 4.122 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.273 0.727 35 H 0.191 0.809 36 H 0.197 0.803 37 H 0.176 0.824 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.206 0.794 47 H 0.065 0.935 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.678 -4.823 -24.680 25.579 hybrid contribution 0.332 -0.302 1.011 1.106 sum 5.011 -5.125 -23.670 24.731 Atomic orbital electron populations 1.21576 0.93937 1.02887 1.01554 1.21722 0.97827 0.90055 1.07432 1.22014 0.81659 0.93769 0.74034 1.90800 1.56425 1.48439 1.49156 1.43508 1.08047 1.06827 1.72667 1.17758 0.96292 0.85628 0.97109 1.21539 0.95152 0.98208 0.98084 1.21437 1.00679 0.91789 0.97528 1.21862 0.92138 1.02287 0.95912 1.19748 0.98379 0.93639 1.01812 1.18882 0.86706 0.81145 0.79541 1.90730 1.16012 1.73582 1.66518 1.47615 1.08209 1.27618 1.48850 1.22582 0.77834 1.03962 1.03540 1.21877 0.98503 0.89984 0.90521 1.20746 0.87567 0.95256 0.91813 0.96980 1.22186 1.00724 0.98720 0.99615 1.42620 1.04286 1.52543 1.38959 1.18909 0.93405 1.16434 1.07314 0.94666 1.25628 1.01841 1.00045 0.98451 1.69942 1.27476 1.38962 1.27777 0.85490 0.78293 0.77387 0.80599 1.20609 1.22480 1.14683 1.20966 0.99499 0.93498 0.98205 0.88949 0.94683 0.93336 0.84726 0.86237 0.72680 0.80947 0.80329 0.82391 0.87946 0.91445 0.90469 0.86765 0.89618 0.91338 0.95058 0.91129 0.79447 0.93459 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.20 71.98 0.66 -1.79 16 2 C -0.13 -1.73 6.42 29.85 0.19 -1.54 16 3 C 0.50 11.82 7.56 87.66 0.66 12.48 16 4 O -0.57 -20.79 13.77 -3.06 -0.04 -20.83 16 5 N -0.66 -12.48 5.34 -303.61 -1.62 -14.10 16 6 C 0.13 3.13 6.25 38.11 0.24 3.37 16 7 C -0.11 -1.76 9.96 22.44 0.22 -1.54 16 8 C -0.10 -1.46 10.02 22.21 0.22 -1.24 16 9 C -0.10 -2.26 7.61 22.54 0.17 -2.09 16 10 C -0.13 -4.40 5.16 -20.10 -0.10 -4.50 16 11 C 0.55 21.76 7.36 86.79 0.64 22.40 16 12 O -0.59 -28.70 16.46 -3.89 -0.06 -28.77 16 13 N -0.59 -20.05 2.73 -850.19 -2.32 -22.37 16 14 C 0.06 1.65 8.52 127.77 1.09 2.74 16 15 C 0.11 3.75 5.02 86.38 0.43 4.19 16 16 C 0.16 6.50 3.20 44.99 0.14 6.64 16 17 H 0.01 0.61 8.08 -2.39 -0.02 0.60 16 18 C -0.15 -5.50 9.49 71.98 0.68 -4.82 16 19 N -0.74 -34.81 4.36 -322.93 -1.41 -36.22 16 20 C -0.23 -13.66 10.41 84.03 0.87 -12.79 16 21 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 22 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 23 N -0.99 -65.23 13.97 21.65 0.30 -64.93 16 24 Si 0.96 43.49 27.73 68.60 1.90 45.40 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.22 -8.22 4.79 99.48 0.48 -7.75 16 28 C -0.10 -3.55 8.21 22.66 0.19 -3.37 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.03 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 32 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.43 3.79 8.82 -92.70 -0.82 2.97 16 35 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 36 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.16 2.62 5.50 -2.91 -0.02 2.60 16 38 H 0.10 1.69 7.03 -2.39 -0.02 1.67 16 39 H 0.07 2.00 3.73 -2.39 -0.01 1.99 16 40 H 0.08 2.07 5.78 -2.38 -0.01 2.05 16 41 H 0.11 2.85 8.07 -2.39 -0.02 2.83 16 42 H 0.09 2.83 7.51 -2.39 -0.02 2.81 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.37 15.58 3.50 -92.71 -0.32 15.26 16 47 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 48 H 0.09 4.12 6.47 -2.91 -0.02 4.10 16 Total: -1.00 -96.31 385.26 3.16 -93.16 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.38 Total: 34.19 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.78 Total: 14.48 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -5.05 Total: -137.62 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.11 Total: -49.60 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.90 Total: 45.40 kcal Total: -96.31 3.16 -93.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700750983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.710 kcal (2) G-P(sol) polarization free energy of solvation -96.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.75 seconds