Wall clock time and date at job start Tue Mar 31 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.54082 * 2 1 4 4 C 1.53094 * 109.50635 * 239.88852 * 2 1 3 5 5 N 1.47017 * 109.29237 * 183.19419 * 4 2 1 6 6 C 1.39914 * 111.00243 * 182.41305 * 5 4 2 7 7 C 1.38879 * 120.00283 * 359.73245 * 6 5 4 8 8 C 1.38076 * 119.99526 * 179.74341 * 7 6 5 9 9 C 1.38839 * 120.00243 * 0.52471 * 8 7 6 10 10 N 1.40195 * 119.99383 * 179.70559 * 9 8 7 11 11 C 1.34777 * 120.00080 * 144.92904 * 10 9 8 12 12 O 1.21598 * 119.99860 * 4.58445 * 11 10 9 13 13 N 1.34772 * 120.00297 * 184.58277 * 11 10 9 14 14 C 1.46507 * 119.99808 * 359.97438 * 13 11 10 15 15 C 1.46496 * 120.00440 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46926 * 90.00024 * 15 13 11 17 17 H 1.07997 * 120.00498 * 0.02562 * 16 15 13 18 18 C 1.37884 * 119.99761 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99903 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99843 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47326 * 90.00265 * 20 18 16 22 22 H 1.48505 * 109.47226 * 210.00366 * 20 18 16 23 23 H 1.48505 * 109.47264 * 330.00347 * 20 18 16 24 24 C 1.38839 * 120.00858 * 359.72194 * 9 8 7 25 25 C 1.38066 * 120.00773 * 0.02802 * 24 9 8 26 26 C 1.47101 * 110.70268 * 58.59439 * 5 4 2 27 27 C 1.53101 * 109.28015 * 301.41280 * 26 5 4 28 28 O 1.43014 * 109.26114 * 56.85420 * 27 26 5 29 29 H 1.09002 * 109.47226 * 180.11285 * 1 2 3 30 30 H 1.08998 * 109.47640 * 300.10833 * 1 2 3 31 31 H 1.09003 * 109.47418 * 60.11029 * 1 2 3 32 32 H 1.08996 * 109.50756 * 303.14942 * 4 2 1 33 33 H 1.09000 * 109.50797 * 63.23913 * 4 2 1 34 34 H 1.08001 * 120.00097 * 359.96765 * 7 6 5 35 35 H 1.07997 * 119.99959 * 180.22721 * 8 7 6 36 36 H 0.97002 * 119.99899 * 324.92363 * 10 9 8 37 37 H 1.08994 * 109.46987 * 90.00085 * 14 13 11 38 38 H 1.08998 * 109.46964 * 209.99739 * 14 13 11 39 39 H 1.08997 * 109.46945 * 330.00005 * 14 13 11 40 40 H 1.08999 * 109.47571 * 209.99757 * 15 13 11 41 41 H 1.09000 * 109.46972 * 330.00009 * 15 13 11 42 42 H 0.97001 * 119.99635 * 179.97438 * 19 18 16 43 43 H 1.08005 * 119.99261 * 179.97438 * 24 9 8 44 44 H 1.08000 * 120.00368 * 179.97438 * 25 24 9 45 45 H 1.09002 * 109.49138 * 181.47519 * 26 5 4 46 46 H 1.08994 * 109.53136 * 61.37965 * 26 5 4 47 47 H 1.09000 * 109.50989 * 296.91115 * 27 26 5 48 48 H 1.09007 * 109.50418 * 176.78658 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5093 -0.7885 -1.2054 6 6 4.0185 -1.3963 -2.3582 7 6 3.1524 -1.8470 -3.3459 8 6 3.6553 -2.4420 -4.4859 9 6 5.0261 -2.5995 -4.6399 10 7 5.5362 -3.2093 -5.7946 11 6 6.7048 -2.7892 -6.3184 12 8 7.3578 -1.9392 -5.7441 13 7 7.1497 -3.3111 -7.4786 14 6 6.3632 -4.3355 -8.1702 15 6 8.4196 -2.8540 -8.0482 16 6 9.5427 -3.7112 -7.5238 17 1 9.3317 -4.5161 -6.8354 18 6 10.8398 -3.4684 -7.9237 19 7 11.0968 -2.4885 -8.7624 20 14 12.2320 -4.5304 -7.2732 21 1 12.4336 -5.6909 -8.1775 22 1 13.4799 -3.7277 -7.2122 23 1 11.8893 -5.0169 -5.9125 24 6 5.8918 -2.1536 -3.6502 25 6 5.3896 -1.5539 -2.5125 26 6 3.9639 -1.4884 0.0059 27 6 3.4333 -0.7567 1.2417 28 8 2.0074 -0.6762 1.1663 29 1 -0.3634 -1.0277 0.0020 30 1 -0.3634 0.5155 0.8890 31 1 -0.3634 0.5121 -0.8910 32 1 1.6332 -1.7343 -1.2758 33 1 1.7267 -0.1800 -2.1390 34 1 2.0858 -1.7289 -3.2240 35 1 2.9821 -2.7893 -5.2557 36 1 5.0481 -3.9336 -6.2166 37 1 5.6708 -3.8563 -8.8623 38 1 7.0318 -4.9948 -8.7236 39 1 5.8018 -4.9175 -7.4393 40 1 8.3797 -2.9324 -9.1347 41 1 8.5922 -1.8158 -7.7649 42 1 12.0093 -2.3175 -9.0434 43 1 6.9581 -2.2766 -3.7701 44 1 6.0631 -1.2074 -1.7425 45 1 5.0536 -1.5019 0.0309 46 1 3.5873 -2.5111 -0.0012 47 1 3.8533 0.2485 1.2778 48 1 3.7200 -1.3040 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085601379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:58 Heat of formation + Delta-G solvation = -20.262644 kcal Electronic energy + Delta-G solvation = -28375.225207 eV Core-core repulsion = 24431.037392 eV Total energy + Delta-G solvation = -3944.187815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76802 -39.91210 -38.40966 -36.12889 -34.81631 -33.75476 -33.28973 -32.48173 -30.93822 -29.61805 -28.14930 -27.51999 -26.13758 -25.49367 -23.68406 -23.04170 -22.25775 -21.38233 -20.58678 -19.34630 -18.02041 -17.37592 -16.80842 -16.67597 -16.51258 -15.84974 -15.61737 -15.19392 -15.00490 -14.82275 -14.66952 -14.20539 -14.01422 -13.84260 -13.49753 -13.23547 -12.99424 -12.82986 -12.69320 -12.43782 -12.32758 -12.19106 -12.12483 -11.94527 -11.88363 -11.52871 -11.20823 -10.96341 -10.92854 -10.89006 -10.58447 -10.47192 -10.16180 -9.89655 -9.66275 -9.28199 -9.07398 -8.76198 -8.44306 -7.77743 -7.36473 -6.04901 -4.09701 1.41737 1.51662 3.20772 3.29390 3.31470 3.36370 3.41257 3.44047 3.71380 4.07068 4.38936 4.40427 4.53454 4.57745 4.61523 4.74307 4.86185 4.95997 4.99072 5.09323 5.15694 5.22696 5.26939 5.28987 5.43767 5.46417 5.48832 5.50517 5.52948 5.63092 5.73496 5.76858 5.83231 6.02529 6.07435 6.14539 6.19773 6.50128 6.67747 6.79849 6.83828 6.85782 6.99880 7.34441 7.35554 7.49208 7.66389 7.92957 8.22003 8.57167 8.91074 9.23380 9.55655 11.02919 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.002211 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.188049 B =12659.934105 C =13479.497646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.021 3.979 5 N -0.486 5.486 6 C 0.077 3.923 7 C -0.150 4.150 8 C -0.131 4.131 9 C 0.160 3.840 10 N -0.697 5.697 11 C 0.697 3.303 12 O -0.568 6.568 13 N -0.613 5.613 14 C 0.084 3.916 15 C 0.259 3.741 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.095 4.095 25 C -0.115 4.115 26 C 0.019 3.981 27 C 0.064 3.936 28 O -0.383 6.383 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.400 0.600 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.148 0.852 44 H 0.125 0.875 45 H 0.094 0.906 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.895 0.566 14.677 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.086 0.914 4 C -0.107 4.107 5 N -0.203 5.203 6 C -0.020 4.020 7 C -0.171 4.171 8 C -0.153 4.153 9 C 0.063 3.937 10 N -0.347 5.347 11 C 0.399 3.601 12 O -0.445 6.445 13 N -0.348 5.348 14 C -0.060 4.060 15 C 0.140 3.860 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.116 4.116 25 C -0.136 4.136 26 C -0.107 4.107 27 C -0.013 4.013 28 O -0.302 6.302 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.237 0.763 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.166 0.834 44 H 0.143 0.857 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.133 1.697 15.094 26.025 hybrid contribution 0.553 -1.607 -0.379 1.741 sum -20.580 0.090 14.715 25.300 Atomic orbital electron populations 1.21749 0.92566 1.03077 1.02830 1.22202 0.95012 0.95724 0.84114 0.91380 1.22977 0.87014 1.00916 0.99772 1.59487 1.09331 1.49989 1.01443 1.18798 0.93555 0.97427 0.92190 1.20924 0.99006 1.01758 0.95418 1.20673 0.93464 1.02467 0.98679 1.17554 0.91811 0.97728 0.86586 1.42994 1.24527 1.39057 1.28137 1.15931 0.80385 0.82064 0.81705 1.90885 1.57056 1.35268 1.61258 1.47503 1.24707 1.40887 1.21705 1.21586 0.95954 0.91730 0.96739 1.19255 0.76899 0.96691 0.93149 1.21446 0.91719 1.15902 1.27496 0.92497 1.24937 0.98669 0.95450 0.95094 1.69931 1.20481 1.29802 1.33113 0.86491 0.81496 0.80076 0.79300 1.20677 1.21067 1.19936 1.21378 1.01588 0.97791 0.90859 1.20666 0.92965 1.01362 0.98601 1.22958 1.01955 0.96444 0.89354 1.22693 0.80924 1.00553 0.97158 1.87989 1.21085 1.78389 1.42757 0.91771 0.91439 0.90764 0.92846 0.88997 0.85755 0.85966 0.76315 0.93655 0.90279 0.93204 0.94774 0.93631 0.92694 0.83429 0.85742 0.88815 0.93058 0.92062 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.57 37.16 0.36 -0.54 16 2 C 0.09 0.72 3.43 -26.68 -0.09 0.63 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.02 0.19 3.61 -3.71 -0.01 0.17 16 5 N -0.49 -5.29 4.78 -170.68 -0.82 -6.11 16 6 C 0.08 0.98 5.64 -83.69 -0.47 0.51 16 7 C -0.15 -1.77 8.81 -39.40 -0.35 -2.12 16 8 C -0.13 -1.66 9.96 -39.42 -0.39 -2.05 16 9 C 0.16 2.51 6.30 -83.59 -0.53 1.98 16 10 N -0.70 -11.35 5.22 -14.17 -0.07 -11.42 16 11 C 0.70 14.90 8.12 -86.92 -0.71 14.19 16 12 O -0.57 -14.49 13.36 5.28 0.07 -14.42 16 13 N -0.61 -13.02 2.86 -188.74 -0.54 -13.55 16 14 C 0.08 1.29 10.24 59.85 0.61 1.91 16 15 C 0.26 6.77 5.16 -5.19 -0.03 6.75 16 16 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.10 -1.60 8.69 -39.42 -0.34 -1.94 16 25 C -0.12 -1.64 9.20 -39.41 -0.36 -2.00 16 26 C 0.02 0.18 5.41 -3.66 -0.02 0.16 16 27 C 0.06 0.52 7.01 37.21 0.26 0.78 16 28 O -0.38 -3.72 10.47 -35.23 -0.37 -4.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.48 7.52 -51.93 -0.39 0.09 16 33 H 0.09 0.77 7.24 -51.93 -0.38 0.39 16 34 H 0.12 1.17 5.81 -52.49 -0.30 0.87 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.40 5.12 6.52 -40.82 -0.27 4.86 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 40 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.15 2.91 6.22 -52.48 -0.33 2.58 16 44 H 0.12 1.59 7.20 -52.49 -0.38 1.21 16 45 H 0.09 0.83 6.87 -51.93 -0.36 0.47 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -34.20 383.39 -10.03 -44.23 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.30 Total: 3.67 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.49 Total: 4.86 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.69 Total: -56.86 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.30 Total: -18.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.20 -10.03 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085601379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.968 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds