Wall clock time and date at job start Tue Mar 31 2020 18:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.54082 * 2 1 4 4 C 1.53094 * 109.50635 * 239.88852 * 2 1 3 5 5 N 1.47017 * 109.29237 * 183.19419 * 4 2 1 6 6 C 1.39914 * 111.00243 * 182.41305 * 5 4 2 7 7 C 1.38879 * 120.00283 * 359.73245 * 6 5 4 8 8 C 1.38076 * 119.99526 * 179.74341 * 7 6 5 9 9 C 1.38839 * 120.00243 * 0.52471 * 8 7 6 10 10 N 1.40195 * 119.99383 * 179.70559 * 9 8 7 11 11 C 1.34777 * 120.00080 * 144.92904 * 10 9 8 12 12 O 1.21598 * 119.99860 * 4.58445 * 11 10 9 13 13 N 1.34772 * 120.00297 * 184.58277 * 11 10 9 14 14 C 1.46507 * 119.99808 * 359.97438 * 13 11 10 15 15 C 1.46496 * 120.00440 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46926 * 90.00024 * 15 13 11 17 17 H 1.07997 * 120.00498 * 0.02562 * 16 15 13 18 18 C 1.37884 * 119.99761 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99903 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99843 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47326 * 90.00265 * 20 18 16 22 22 H 1.48505 * 109.47226 * 210.00366 * 20 18 16 23 23 H 1.48505 * 109.47264 * 330.00347 * 20 18 16 24 24 C 1.38839 * 120.00858 * 359.72194 * 9 8 7 25 25 C 1.38066 * 120.00773 * 0.02802 * 24 9 8 26 26 C 1.47101 * 110.70268 * 58.59439 * 5 4 2 27 27 C 1.53101 * 109.28015 * 301.41280 * 26 5 4 28 28 O 1.43014 * 109.26114 * 56.85420 * 27 26 5 29 29 H 1.09002 * 109.47226 * 180.11285 * 1 2 3 30 30 H 1.08998 * 109.47640 * 300.10833 * 1 2 3 31 31 H 1.09003 * 109.47418 * 60.11029 * 1 2 3 32 32 H 1.08996 * 109.50756 * 303.14942 * 4 2 1 33 33 H 1.09000 * 109.50797 * 63.23913 * 4 2 1 34 34 H 1.08001 * 120.00097 * 359.96765 * 7 6 5 35 35 H 1.07997 * 119.99959 * 180.22721 * 8 7 6 36 36 H 0.97002 * 119.99899 * 324.92363 * 10 9 8 37 37 H 1.08994 * 109.46987 * 90.00085 * 14 13 11 38 38 H 1.08998 * 109.46964 * 209.99739 * 14 13 11 39 39 H 1.08997 * 109.46945 * 330.00005 * 14 13 11 40 40 H 1.08999 * 109.47571 * 209.99757 * 15 13 11 41 41 H 1.09000 * 109.46972 * 330.00009 * 15 13 11 42 42 H 0.97001 * 119.99635 * 179.97438 * 19 18 16 43 43 H 1.08005 * 119.99261 * 179.97438 * 24 9 8 44 44 H 1.08000 * 120.00368 * 179.97438 * 25 24 9 45 45 H 1.09002 * 109.49138 * 181.47519 * 26 5 4 46 46 H 1.08994 * 109.53136 * 61.37965 * 26 5 4 47 47 H 1.09000 * 109.50989 * 296.91115 * 27 26 5 48 48 H 1.09007 * 109.50418 * 176.78658 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5093 -0.7885 -1.2054 6 6 4.0185 -1.3963 -2.3582 7 6 3.1524 -1.8470 -3.3459 8 6 3.6553 -2.4420 -4.4859 9 6 5.0261 -2.5995 -4.6399 10 7 5.5362 -3.2093 -5.7946 11 6 6.7048 -2.7892 -6.3184 12 8 7.3578 -1.9392 -5.7441 13 7 7.1497 -3.3111 -7.4786 14 6 6.3632 -4.3355 -8.1702 15 6 8.4196 -2.8540 -8.0482 16 6 9.5427 -3.7112 -7.5238 17 1 9.3317 -4.5161 -6.8354 18 6 10.8398 -3.4684 -7.9237 19 7 11.0968 -2.4885 -8.7624 20 14 12.2320 -4.5304 -7.2732 21 1 12.4336 -5.6909 -8.1775 22 1 13.4799 -3.7277 -7.2122 23 1 11.8893 -5.0169 -5.9125 24 6 5.8918 -2.1536 -3.6502 25 6 5.3896 -1.5539 -2.5125 26 6 3.9639 -1.4884 0.0059 27 6 3.4333 -0.7567 1.2417 28 8 2.0074 -0.6762 1.1663 29 1 -0.3634 -1.0277 0.0020 30 1 -0.3634 0.5155 0.8890 31 1 -0.3634 0.5121 -0.8910 32 1 1.6332 -1.7343 -1.2758 33 1 1.7267 -0.1800 -2.1390 34 1 2.0858 -1.7289 -3.2240 35 1 2.9821 -2.7893 -5.2557 36 1 5.0481 -3.9336 -6.2166 37 1 5.6708 -3.8563 -8.8623 38 1 7.0318 -4.9948 -8.7236 39 1 5.8018 -4.9175 -7.4393 40 1 8.3797 -2.9324 -9.1347 41 1 8.5922 -1.8158 -7.7649 42 1 12.0093 -2.3175 -9.0434 43 1 6.9581 -2.2766 -3.7701 44 1 6.0631 -1.2074 -1.7425 45 1 5.0536 -1.5019 0.0309 46 1 3.5873 -2.5111 -0.0012 47 1 3.8533 0.2485 1.2778 48 1 3.7200 -1.3040 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085601379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:57 Heat of formation + Delta-G solvation = -43.515945 kcal Electronic energy + Delta-G solvation = -28376.233546 eV Core-core repulsion = 24431.037392 eV Total energy + Delta-G solvation = -3945.196154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82743 -41.15191 -39.47849 -37.25071 -36.49172 -35.19348 -34.41152 -33.91755 -31.97599 -30.67025 -29.66120 -28.63114 -27.40195 -26.67090 -25.00829 -24.35093 -23.34813 -22.35107 -21.51911 -20.76741 -19.35677 -18.69721 -18.47863 -17.97965 -17.43098 -16.82548 -16.79029 -16.45491 -16.38443 -15.89795 -15.82634 -15.40912 -15.12531 -14.95565 -14.83728 -14.60630 -14.28330 -13.92101 -13.73497 -13.62479 -13.47459 -13.32612 -13.13106 -13.07927 -12.87034 -12.81725 -12.69399 -12.52285 -12.20690 -12.16969 -11.94111 -11.76006 -11.62303 -11.52338 -10.99059 -10.67782 -10.63796 -10.10556 -9.89529 -9.47064 -8.50620 -8.21183 -6.36808 0.31500 0.43313 1.35769 1.38981 1.48975 1.75170 2.15373 2.38534 2.53593 2.79285 2.90665 3.05434 3.09726 3.74393 3.79399 3.91761 4.00748 4.08606 4.13753 4.19237 4.28033 4.38828 4.45086 4.47082 4.52755 4.60098 4.64976 4.65962 4.72158 4.80176 4.81454 4.91102 4.95524 5.00921 5.06983 5.10881 5.19444 5.22149 5.31214 5.42003 5.53722 5.57948 5.79173 5.80915 5.95841 6.05723 6.10261 6.18185 6.28313 6.71758 7.06688 7.30192 7.64254 8.84470 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.002211 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.188049 B =12659.934105 C =13479.497646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.064 0.936 4 C 0.020 3.980 5 N -0.496 5.496 6 C 0.086 3.914 7 C -0.145 4.145 8 C -0.113 4.113 9 C 0.129 3.871 10 N -0.675 5.675 11 C 0.691 3.309 12 O -0.621 6.621 13 N -0.621 5.621 14 C 0.078 3.922 15 C 0.276 3.724 16 C -0.542 4.542 17 H 0.051 0.949 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.276 1.276 24 C -0.120 4.120 25 C -0.125 4.125 26 C 0.019 3.981 27 C 0.065 3.935 28 O -0.397 6.397 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.030 0.970 41 H -0.001 1.001 42 H 0.267 0.733 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.671 -0.664 15.442 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.082 0.918 4 C -0.107 4.107 5 N -0.212 5.212 6 C -0.012 4.012 7 C -0.166 4.166 8 C -0.134 4.134 9 C 0.034 3.966 10 N -0.326 5.326 11 C 0.393 3.607 12 O -0.502 6.502 13 N -0.356 5.356 14 C -0.064 4.064 15 C 0.154 3.846 16 C -0.580 4.580 17 H 0.069 0.931 18 C -0.192 4.192 19 N -0.567 5.567 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.201 1.201 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.107 4.107 27 C -0.012 4.012 28 O -0.317 6.317 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.259 0.741 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.048 0.952 41 H 0.017 0.983 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.112 0.888 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.993 0.422 15.865 28.767 hybrid contribution 1.303 -1.145 -0.517 1.811 sum -22.690 -0.724 15.348 27.402 Atomic orbital electron populations 1.21756 0.90859 1.03395 1.03786 1.22328 0.96330 0.95244 0.83395 0.91757 1.23088 0.85498 1.01471 1.00668 1.59452 1.10785 1.49764 1.01207 1.18946 0.92924 0.96189 0.93136 1.21317 1.00499 1.00363 0.94452 1.20971 0.92096 1.00902 0.99459 1.17774 0.93098 0.99570 0.86171 1.42589 1.22813 1.39197 1.28044 1.16136 0.81413 0.81631 0.81491 1.90853 1.58981 1.37653 1.62670 1.47365 1.23889 1.42199 1.22129 1.21895 0.95846 0.90773 0.97860 1.18700 0.79117 0.94034 0.92756 1.21697 0.92874 1.16001 1.27465 0.93066 1.25849 1.01356 0.96751 0.95234 1.70047 1.21266 1.31229 1.34138 0.85414 0.77966 0.78709 0.78679 1.18679 1.20622 1.20058 1.21147 0.99933 1.00090 0.92909 1.20661 0.94231 1.01685 0.98006 1.22997 1.02087 0.96340 0.89234 1.22777 0.80414 1.00722 0.97260 1.87982 1.21671 1.78572 1.43431 0.91721 0.91306 0.89055 0.92326 0.87947 0.82466 0.82575 0.74120 0.90912 0.90794 0.89588 0.95200 0.98318 0.92380 0.87566 0.85454 0.88832 0.93291 0.92024 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.57 71.98 0.69 -0.66 16 2 C 0.08 1.21 3.43 30.62 0.10 1.32 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.02 0.30 3.61 86.31 0.31 0.61 16 5 N -0.50 -9.92 4.78 -693.91 -3.32 -13.24 16 6 C 0.09 2.05 5.64 38.16 0.22 2.26 16 7 C -0.15 -2.98 8.81 22.38 0.20 -2.79 16 8 C -0.11 -2.55 9.96 22.38 0.22 -2.32 16 9 C 0.13 4.02 6.30 38.09 0.24 4.26 16 10 N -0.67 -21.65 5.22 -317.01 -1.66 -23.30 16 11 C 0.69 30.51 8.12 179.06 1.45 31.96 16 12 O -0.62 -33.83 13.36 -4.02 -0.05 -33.89 16 13 N -0.62 -26.91 2.86 -869.31 -2.48 -29.40 16 14 C 0.08 2.29 10.24 127.77 1.31 3.60 16 15 C 0.28 15.07 5.16 85.63 0.44 15.51 16 16 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 17 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 18 C 0.01 0.41 5.46 84.66 0.46 0.88 16 19 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 20 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 C -0.12 -4.22 8.69 22.37 0.19 -4.03 16 25 C -0.13 -3.63 9.20 22.38 0.21 -3.43 16 26 C 0.02 0.33 5.41 86.30 0.47 0.80 16 27 C 0.07 0.96 7.01 72.02 0.50 1.46 16 28 O -0.40 -6.93 10.47 -148.98 -1.56 -8.49 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.85 7.52 -2.39 -0.02 0.83 16 33 H 0.10 1.33 7.24 -2.39 -0.02 1.32 16 34 H 0.16 2.22 5.81 -2.91 -0.02 2.20 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.42 9.78 6.52 -92.71 -0.60 9.17 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 39 H 0.09 1.86 6.30 -2.39 -0.02 1.84 16 40 H 0.03 1.63 8.07 -2.39 -0.02 1.62 16 41 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.11 4.62 6.22 -2.91 -0.02 4.60 16 44 H 0.13 3.44 7.20 -2.91 -0.02 3.42 16 45 H 0.09 1.61 6.87 -2.39 -0.02 1.59 16 46 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -78.87 383.39 0.87 -78.01 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.37 Total: 20.91 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 7.26 Total: 18.10 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -7.17 Total: -122.08 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.61 Total: -42.38 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -78.87 0.87 -78.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085601379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.490 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds