Wall clock time and date at job start Tue Mar 31 2020 18:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.50050 * 2 1 4 4 C 1.53098 * 109.50845 * 120.13171 * 2 1 3 5 5 N 1.47011 * 109.25907 * 176.78398 * 4 2 1 6 6 C 1.39918 * 111.00422 * 177.61116 * 5 4 2 7 7 C 1.38868 * 120.00801 * 179.68272 * 6 5 4 8 8 C 1.38074 * 119.99846 * 179.97438 * 7 6 5 9 9 C 1.38840 * 120.00232 * 359.97438 * 8 7 6 10 10 N 1.40194 * 119.99501 * 180.02562 * 9 8 7 11 11 C 1.34783 * 120.00088 * 35.09137 * 10 9 8 12 12 O 1.21593 * 119.99892 * 355.41699 * 11 10 9 13 13 N 1.34774 * 119.99864 * 175.41162 * 11 10 9 14 14 C 1.46504 * 119.99982 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99886 * 180.02562 * 13 11 10 16 16 C 1.50699 * 109.46969 * 90.00352 * 15 13 11 17 17 H 1.07995 * 120.00266 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99856 * 180.02562 * 16 15 13 19 19 N 1.31509 * 119.99939 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47336 * 59.99934 * 20 18 16 22 22 H 1.48495 * 109.47398 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47139 * 299.99950 * 20 18 16 24 24 C 1.38839 * 120.00897 * 0.29733 * 9 8 7 25 25 C 1.38072 * 120.00244 * 359.45181 * 24 9 8 26 26 C 1.47020 * 110.75197 * 301.38614 * 5 4 2 27 27 C 1.53096 * 109.25726 * 58.61500 * 26 5 4 28 28 O 1.43010 * 109.50434 * 239.91570 * 2 1 3 29 29 H 1.09000 * 109.47147 * 180.08821 * 1 2 3 30 30 H 1.09003 * 109.47225 * 300.08077 * 1 2 3 31 31 H 1.08991 * 109.47589 * 60.08180 * 1 2 3 32 32 H 1.09001 * 109.50571 * 56.85098 * 4 2 1 33 33 H 1.08994 * 109.50771 * 296.72098 * 4 2 1 34 34 H 1.08005 * 120.00180 * 359.95384 * 7 6 5 35 35 H 1.07998 * 119.99646 * 180.02562 * 8 7 6 36 36 H 0.97000 * 120.00165 * 215.09980 * 10 9 8 37 37 H 1.09000 * 109.47016 * 269.99522 * 14 13 11 38 38 H 1.08996 * 109.47195 * 29.99854 * 14 13 11 39 39 H 1.09004 * 109.46770 * 149.99652 * 14 13 11 40 40 H 1.09002 * 109.46892 * 330.00190 * 15 13 11 41 41 H 1.08998 * 109.47359 * 210.00471 * 15 13 11 42 42 H 0.97002 * 120.00183 * 179.97438 * 19 18 16 43 43 H 1.08000 * 119.99586 * 179.70244 * 24 9 8 44 44 H 1.08007 * 120.00248 * 180.25346 * 25 24 9 45 45 H 1.08995 * 109.50715 * 178.54824 * 26 5 4 46 46 H 1.08993 * 109.50380 * 298.68294 * 26 5 4 47 47 H 1.08997 * 109.51073 * 63.08416 * 27 26 5 48 48 H 1.08999 * 109.50862 * 183.21718 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7244 1.2481 5 7 3.5093 -0.7889 1.2041 6 6 4.0194 -1.3975 2.3561 7 6 5.3901 -1.5612 2.5063 8 6 5.8932 -2.1614 3.6435 9 6 5.0287 -2.6007 4.6371 10 7 5.5397 -3.2095 5.7919 11 6 6.7119 -2.7931 6.3108 12 8 7.3668 -1.9477 5.7322 13 7 7.1580 -3.3138 7.4712 14 6 6.3690 -4.3328 8.1680 15 6 8.4317 -2.8609 8.0355 16 6 8.1876 -1.6867 8.9481 17 1 7.1841 -1.3148 9.0928 18 6 9.2456 -1.0866 9.5974 19 7 10.4677 -1.5392 9.4207 20 14 8.9431 0.3693 10.7280 21 1 8.0322 -0.0387 11.8275 22 1 10.2343 0.8292 11.2992 23 1 8.3223 1.4752 9.9555 24 6 3.6578 -2.4422 4.4846 25 6 3.1547 -1.8374 3.3499 26 6 3.9640 -1.4884 -0.0065 27 6 3.4335 -0.7562 -1.2420 28 8 2.0075 -0.6757 -1.1664 29 1 -0.3633 -1.0277 0.0016 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8906 32 1 1.6333 -1.7348 1.2752 33 1 1.7274 -0.1804 2.1389 34 1 6.0627 -1.2194 1.7334 35 1 6.9594 -2.2883 3.7604 36 1 5.0498 -3.9305 6.2174 37 1 5.6810 -3.8485 8.8610 38 1 5.8028 -4.9143 7.4406 39 1 7.0365 -4.9936 8.7211 40 1 9.1005 -2.5611 7.2286 41 1 8.8873 -3.6729 8.6022 42 1 11.2121 -1.1167 9.8772 43 1 2.9853 -2.7883 5.2555 44 1 2.0885 -1.7105 3.2332 45 1 5.0536 -1.5019 -0.0315 46 1 3.5866 -2.5109 0.0006 47 1 3.8533 0.2490 -1.2777 48 1 3.7200 -1.3032 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085601382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:00 Heat of formation + Delta-G solvation = -43.288272 kcal Electronic energy + Delta-G solvation = -28389.711113 eV Core-core repulsion = 24444.524831 eV Total energy + Delta-G solvation = -3945.186281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83079 -41.15758 -39.47889 -37.25324 -36.49510 -35.19442 -34.41207 -33.92217 -31.97658 -30.66865 -29.65949 -28.63651 -27.40323 -26.67076 -25.01546 -24.35306 -23.34770 -22.35518 -21.52054 -20.76948 -19.35107 -18.70229 -18.49339 -17.99661 -17.43242 -16.82244 -16.79246 -16.44153 -16.29170 -15.95116 -15.87106 -15.41915 -15.16220 -14.95731 -14.79939 -14.60843 -14.21111 -13.95524 -13.74498 -13.63283 -13.48602 -13.33936 -13.13896 -13.09540 -12.86591 -12.79831 -12.69647 -12.52378 -12.18885 -12.16702 -11.93557 -11.78226 -11.61757 -11.52111 -11.00071 -10.67781 -10.63632 -10.11118 -9.89010 -9.47955 -8.49595 -8.21242 -6.36290 0.32251 0.43428 1.35917 1.40535 1.47422 1.72434 2.17486 2.38580 2.53890 2.79199 2.90837 3.04948 3.09528 3.74145 3.79102 3.91720 4.00800 4.08469 4.13473 4.19486 4.27438 4.38750 4.45062 4.47319 4.52602 4.59487 4.64694 4.65528 4.72236 4.80039 4.80785 4.91114 4.95783 5.01185 5.06686 5.10233 5.19466 5.21739 5.30572 5.41437 5.53786 5.57843 5.79110 5.81110 5.95822 6.06164 6.09437 6.18024 6.28140 6.71744 7.06315 7.30461 7.63897 8.84532 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.002207 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.362152 B =12681.752418 C =12943.758600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.064 0.936 4 C 0.020 3.980 5 N -0.496 5.496 6 C 0.085 3.915 7 C -0.125 4.125 8 C -0.118 4.118 9 C 0.129 3.871 10 N -0.675 5.675 11 C 0.692 3.308 12 O -0.621 6.621 13 N -0.621 5.621 14 C 0.080 3.920 15 C 0.276 3.724 16 C -0.543 4.543 17 H 0.050 0.950 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.281 1.281 24 C -0.116 4.116 25 C -0.146 4.146 26 C 0.020 3.980 27 C 0.064 3.936 28 O -0.397 6.397 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.079 0.921 40 H -0.001 1.001 41 H 0.031 0.969 42 H 0.268 0.732 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.095 0.905 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.425 -3.808 -17.687 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.082 0.918 4 C -0.107 4.107 5 N -0.213 5.213 6 C -0.013 4.013 7 C -0.146 4.146 8 C -0.139 4.139 9 C 0.034 3.966 10 N -0.326 5.326 11 C 0.394 3.606 12 O -0.501 6.501 13 N -0.356 5.356 14 C -0.062 4.062 15 C 0.154 3.846 16 C -0.581 4.581 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.790 3.210 21 H -0.184 1.184 22 H -0.202 1.202 23 H -0.207 1.207 24 C -0.137 4.137 25 C -0.167 4.167 26 C -0.106 4.106 27 C -0.012 4.012 28 O -0.316 6.316 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.259 0.741 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.018 0.982 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.172 0.828 44 H 0.174 0.826 45 H 0.113 0.887 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.689 -2.808 -18.166 28.430 hybrid contribution 0.573 -0.134 1.234 1.367 sum -21.116 -2.942 -16.931 27.225 Atomic orbital electron populations 1.21756 0.90892 1.03406 1.03757 1.22319 0.96315 0.95228 0.83408 0.91809 1.23082 0.85558 1.01458 1.00618 1.59430 1.10737 1.49800 1.01289 1.18953 0.93023 0.96217 0.93064 1.20679 0.94142 1.01639 0.98139 1.21150 0.99986 1.00074 0.92722 1.17777 0.93076 0.99629 0.86161 1.42587 1.22326 1.39601 1.28118 1.16119 0.81683 0.81314 0.81488 1.90851 1.58968 1.37128 1.63155 1.47359 1.24264 1.42422 1.21519 1.21882 0.96202 0.90408 0.97710 1.18721 0.79744 0.94166 0.91967 1.21668 0.93636 1.15921 1.26915 0.93210 1.25831 0.94624 1.00128 0.98520 1.70031 0.99563 1.42878 1.44192 0.85493 0.77800 0.78845 0.78817 1.18407 1.20185 1.20654 1.20961 0.92271 1.00955 0.99492 1.21298 1.00483 1.00413 0.94513 1.22986 1.02151 0.96336 0.89136 1.22789 0.80382 1.00727 0.97331 1.87980 1.21726 1.78571 1.43356 0.91683 0.89154 0.91276 0.92291 0.88118 0.85235 0.87169 0.74134 0.92255 0.89021 0.90263 0.98243 0.95092 0.92363 0.82842 0.82618 0.88673 0.93231 0.92074 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.57 71.98 0.69 -0.72 16 2 C 0.09 1.24 3.43 30.63 0.10 1.35 16 3 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 4 C 0.02 0.31 3.62 86.31 0.31 0.62 16 5 N -0.50 -10.00 4.78 -694.15 -3.32 -13.32 16 6 C 0.09 2.04 5.65 38.15 0.22 2.26 16 7 C -0.13 -3.58 9.19 22.38 0.21 -3.37 16 8 C -0.12 -4.08 8.69 22.37 0.19 -3.89 16 9 C 0.13 4.02 6.30 38.09 0.24 4.26 16 10 N -0.67 -21.61 5.22 -317.01 -1.66 -23.27 16 11 C 0.69 30.46 8.12 179.05 1.45 31.91 16 12 O -0.62 -33.69 13.36 -4.01 -0.05 -33.74 16 13 N -0.62 -26.86 2.86 -869.30 -2.48 -29.35 16 14 C 0.08 2.34 10.29 127.77 1.31 3.66 16 15 C 0.28 15.04 5.20 85.63 0.45 15.49 16 16 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 17 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 18 C 0.01 0.47 5.46 84.66 0.46 0.93 16 19 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 20 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 24 C -0.12 -2.69 9.96 22.37 0.22 -2.47 16 25 C -0.15 -3.09 8.82 22.38 0.20 -2.89 16 26 C 0.02 0.33 5.41 86.31 0.47 0.80 16 27 C 0.06 0.94 7.01 72.01 0.50 1.44 16 28 O -0.40 -6.93 10.47 -148.98 -1.56 -8.49 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.88 7.55 -2.39 -0.02 0.86 16 33 H 0.10 1.39 7.21 -2.39 -0.02 1.38 16 34 H 0.13 3.39 7.18 -2.91 -0.02 3.37 16 35 H 0.11 4.57 6.22 -2.91 -0.02 4.55 16 36 H 0.42 9.72 6.52 -92.71 -0.60 9.11 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.85 6.30 -2.39 -0.02 1.84 16 39 H 0.08 2.22 7.89 -2.39 -0.02 2.20 16 40 H 0.00 -0.04 7.42 -2.39 -0.02 -0.05 16 41 H 0.03 1.68 7.89 -2.39 -0.02 1.67 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 44 H 0.16 2.33 5.81 -2.91 -0.02 2.31 16 45 H 0.09 1.57 6.84 -2.39 -0.02 1.55 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.86 383.06 0.88 -77.98 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.37 Total: 20.92 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 7.27 Total: 17.83 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -7.17 Total: -122.11 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.61 Total: -42.23 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.86 0.88 -77.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085601382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.691 kcal (2) G-P(sol) polarization free energy of solvation -78.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds