Wall clock time and date at job start Tue Mar 31 2020 18:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.50650 * 2 1 4 4 C 1.53100 * 109.50946 * 120.09051 * 2 1 3 5 5 N 1.47013 * 109.26011 * 63.12738 * 4 2 1 6 6 C 1.38458 * 111.00217 * 182.39826 * 5 4 2 7 7 C 1.39393 * 119.53890 * 179.72938 * 6 5 4 8 8 C 1.36853 * 119.37841 * 179.76555 * 7 6 5 9 9 C 1.40359 * 118.49064 * 0.48966 * 8 7 6 10 10 C 1.47541 * 120.47239 * 179.76683 * 9 8 7 11 11 O 1.21597 * 119.99430 * 141.61808 * 10 9 8 12 12 N 1.34771 * 120.00560 * 321.61439 * 10 9 8 13 13 C 1.46502 * 119.99626 * 4.81199 * 12 10 9 14 14 C 1.46497 * 120.00205 * 184.81041 * 12 10 9 15 15 C 1.50699 * 109.47085 * 90.00109 * 14 12 10 16 16 H 1.08002 * 120.00121 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00436 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99600 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00151 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47066 * 60.00691 * 19 17 15 21 21 H 1.48503 * 109.46870 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47423 * 300.00305 * 19 17 15 23 23 C 1.39557 * 119.05040 * 359.75412 * 9 8 7 24 24 N 1.31676 * 120.51859 * 359.97438 * 23 9 8 25 25 C 1.47006 * 110.75115 * 58.61557 * 5 4 2 26 26 C 1.53094 * 109.26222 * 301.38565 * 25 5 4 27 27 H 1.09000 * 109.51060 * 296.91497 * 26 25 5 28 28 C 1.53005 * 109.50905 * 176.78337 * 26 25 5 29 29 O 1.43018 * 109.25794 * 56.84985 * 26 25 5 30 30 H 1.08998 * 109.46628 * 299.91222 * 1 2 3 31 31 H 1.09000 * 109.47008 * 59.91396 * 1 2 3 32 32 H 1.09001 * 109.46898 * 179.91546 * 1 2 3 33 33 H 1.09004 * 109.50275 * 303.19088 * 4 2 1 34 34 H 1.09000 * 109.50744 * 183.06631 * 4 2 1 35 35 H 1.08001 * 120.31371 * 359.97438 * 7 6 5 36 36 H 1.08003 * 120.75874 * 180.22241 * 8 7 6 37 37 H 1.08998 * 109.47000 * 84.95925 * 13 12 10 38 38 H 1.09006 * 109.47081 * 204.95185 * 13 12 10 39 39 H 1.08991 * 109.47159 * 324.95434 * 13 12 10 40 40 H 1.08997 * 109.47327 * 209.99884 * 14 12 10 41 41 H 1.09001 * 109.47497 * 330.00313 * 14 12 10 42 42 H 0.96997 * 119.99768 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.74104 * 179.97438 * 23 9 8 44 44 H 1.09003 * 109.50443 * 61.32378 * 25 5 4 45 45 H 1.09001 * 109.50853 * 181.44672 * 25 5 4 46 46 H 1.08993 * 109.47039 * 300.22029 * 28 26 25 47 47 H 1.08996 * 109.46999 * 60.21692 * 28 26 25 48 48 H 1.09001 * 109.47026 * 180.21355 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 1.2486 5 7 1.6120 -2.1289 1.2047 6 6 2.0102 -2.8053 2.3453 7 6 1.6897 -4.1540 2.4916 8 6 2.0891 -4.8206 3.6181 9 6 2.8038 -4.1127 4.5970 10 6 3.2512 -4.7869 5.8307 11 8 4.3377 -4.5222 6.3083 12 7 2.4558 -5.6960 6.4283 13 6 1.1943 -6.0926 5.7978 14 6 2.8527 -6.2876 7.7084 15 6 2.3155 -5.4473 8.8382 16 1 1.7360 -4.5614 8.6241 17 6 2.5628 -5.8100 10.1452 18 7 3.2680 -6.8891 10.4060 19 14 1.8975 -4.7680 11.5455 20 1 0.4159 -4.7149 11.4624 21 1 2.2997 -5.3678 12.8432 22 1 2.4486 -3.3928 11.4444 23 6 3.0853 -2.7621 4.3864 24 7 2.6870 -2.1598 3.2853 25 6 2.1203 -2.7912 -0.0053 26 6 1.6083 -2.0470 -1.2413 27 1 0.5205 -2.1072 -1.2779 28 6 2.1985 -2.6830 -2.5016 29 8 2.0084 -0.6761 -1.1660 30 1 -0.3632 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6327 -0.2457 2.1390 34 1 3.1299 -0.6762 1.2766 35 1 1.1342 -4.6689 1.7217 36 1 1.8560 -5.8665 3.7528 37 1 1.3832 -6.8863 5.0750 38 1 0.5042 -6.4528 6.5608 39 1 0.7570 -5.2339 5.2885 40 1 2.4488 -7.2973 7.7828 41 1 3.9403 -6.3259 7.7695 42 1 3.4423 -7.1440 11.3255 43 1 3.6341 -2.2066 5.1325 44 1 3.2102 -2.7770 0.0027 45 1 1.7693 -3.8229 -0.0302 46 1 3.2862 -2.6239 -2.4630 47 1 1.8932 -3.7278 -2.5585 48 1 1.8366 -2.1503 -3.3810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123208217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:47 Heat of formation + Delta-G solvation = -17.618556 kcal Electronic energy + Delta-G solvation = -28854.637533 eV Core-core repulsion = 24910.564374 eV Total energy + Delta-G solvation = -3944.073159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24200 -39.92937 -38.52096 -35.95683 -35.01811 -33.88803 -33.00710 -32.26168 -31.20365 -29.82353 -27.88566 -27.34307 -26.37783 -25.48051 -23.93648 -23.41495 -22.40920 -22.02869 -19.87625 -19.24100 -17.84550 -17.17947 -16.61760 -16.54613 -16.45668 -15.78489 -15.70428 -15.22873 -15.13981 -14.73627 -14.54035 -14.40795 -14.20884 -13.66133 -13.45315 -13.33402 -13.15276 -12.85016 -12.61917 -12.43068 -12.30082 -12.22906 -12.17675 -12.03910 -11.80119 -11.70399 -11.43646 -11.22380 -10.95806 -10.74587 -10.62091 -10.33552 -10.20216 -9.90373 -9.78365 -9.69774 -9.64415 -9.02663 -8.46601 -8.25813 -7.72819 -6.07740 -4.13064 0.82105 1.23774 3.01107 3.30216 3.31466 3.34862 3.36932 3.40638 3.73490 4.01710 4.18185 4.40251 4.42015 4.49054 4.62566 4.69866 4.75548 4.82987 4.90381 4.95315 4.99553 5.02003 5.05990 5.16841 5.23832 5.27109 5.35894 5.43897 5.54754 5.58759 5.64335 5.66004 5.70333 5.73447 5.74226 5.86668 5.95299 6.03998 6.13506 6.29276 6.36483 6.83701 6.88820 6.99500 7.38280 7.45795 7.85121 7.88278 8.18174 8.29912 8.82579 8.98295 9.52143 11.00300 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.002354 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.742750 B =11889.999987 C =12354.814478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.110 0.890 4 C 0.036 3.964 5 N -0.473 5.473 6 C 0.317 3.683 7 C -0.192 4.192 8 C -0.033 4.033 9 C -0.192 4.192 10 C 0.553 3.447 11 O -0.535 6.535 12 N -0.593 5.593 13 C 0.078 3.922 14 C 0.245 3.755 15 C -0.530 4.530 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.177 3.823 24 N -0.522 5.522 25 C 0.028 3.972 26 C 0.087 3.913 27 H 0.073 0.927 28 C -0.145 4.145 29 O -0.376 6.376 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.265 0.735 43 H 0.167 0.833 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 7.779 -25.620 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.128 0.872 4 C -0.091 4.091 5 N -0.190 5.190 6 C 0.085 3.915 7 C -0.214 4.214 8 C -0.059 4.059 9 C -0.198 4.198 10 C 0.339 3.661 11 O -0.413 6.413 12 N -0.324 5.324 13 C -0.066 4.066 14 C 0.126 3.874 15 C -0.569 4.569 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.019 3.981 24 N -0.235 5.235 25 C -0.099 4.099 26 C 0.029 3.971 27 H 0.091 0.909 28 C -0.203 4.203 29 O -0.295 6.295 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.184 0.816 44 H 0.074 0.926 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.630 8.760 -25.522 27.787 hybrid contribution -0.157 -0.483 1.388 1.479 sum -6.787 8.277 -24.134 26.401 Atomic orbital electron populations 1.22309 0.95465 1.03362 1.02321 1.22394 0.94454 0.96278 0.84040 0.87234 1.22697 1.00254 0.86700 0.99485 1.59152 1.55368 1.03828 1.00700 1.19885 0.90363 0.90050 0.91245 1.21161 1.05808 0.94048 1.00403 1.21750 0.91750 1.00978 0.91389 1.21143 1.04093 0.96649 0.97913 1.17868 0.84974 0.80170 0.83101 1.90776 1.21298 1.63757 1.65496 1.48076 1.19742 1.40902 1.23701 1.21961 0.87313 0.98947 0.98375 1.19361 0.97700 0.93186 0.77185 1.21386 1.34143 1.10624 0.90720 0.92466 1.24935 0.95070 0.95264 0.98767 1.69920 1.38865 1.24321 1.20145 0.86542 0.79168 0.80615 0.81018 1.20228 1.21122 1.20119 1.22709 0.92133 0.90754 0.92493 1.67702 1.13011 1.39301 1.03532 1.23029 0.99269 0.99227 0.88338 1.22174 0.99243 0.81926 0.93800 0.90919 1.21753 1.02007 1.00390 0.96123 1.88063 1.75548 1.22856 1.43052 0.91448 0.92201 0.91208 0.88387 0.92088 0.84473 0.83363 0.93493 0.90422 0.92101 0.94742 0.93499 0.92584 0.81621 0.92568 0.88726 0.91698 0.90743 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 8.89 37.16 0.33 -1.00 16 2 C 0.09 0.73 3.92 -26.68 -0.10 0.62 16 3 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.04 0.36 4.22 -3.71 -0.02 0.35 16 5 N -0.47 -4.93 4.11 -172.93 -0.71 -5.64 16 6 C 0.32 3.98 6.39 -155.27 -0.99 2.99 16 7 C -0.19 -2.16 9.15 -39.65 -0.36 -2.53 16 8 C -0.03 -0.42 7.63 -39.29 -0.30 -0.72 16 9 C -0.19 -3.18 5.27 -104.81 -0.55 -3.73 16 10 C 0.55 11.74 7.37 -12.47 -0.09 11.65 16 11 O -0.54 -13.62 16.46 5.28 0.09 -13.53 16 12 N -0.59 -12.54 2.86 -184.20 -0.53 -13.07 16 13 C 0.08 1.21 8.87 59.85 0.53 1.74 16 14 C 0.24 6.34 5.17 -5.20 -0.03 6.32 16 15 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.18 2.83 10.80 -17.13 -0.18 2.65 16 24 N -0.52 -7.58 8.67 -12.14 -0.11 -7.69 16 25 C 0.03 0.23 4.67 -3.72 -0.02 0.22 16 26 C 0.09 0.66 3.03 -26.68 -0.08 0.58 16 27 H 0.07 0.52 6.49 -51.93 -0.34 0.19 16 28 C -0.15 -0.84 9.57 37.16 0.36 -0.48 16 29 O -0.38 -3.56 10.28 -35.23 -0.36 -3.92 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.57 6.13 -51.93 -0.32 0.25 16 33 H 0.10 1.06 7.85 -51.93 -0.41 0.65 16 34 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 35 H 0.14 1.15 7.18 -52.49 -0.38 0.77 16 36 H 0.15 1.64 5.29 -52.48 -0.28 1.36 16 37 H 0.05 0.59 6.86 -51.93 -0.36 0.23 16 38 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 39 H 0.06 0.84 5.83 -51.93 -0.30 0.54 16 40 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.17 2.65 8.05 -52.49 -0.42 2.22 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.65 6.81 -51.93 -0.35 0.30 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -33.69 381.39 -9.38 -43.07 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.29 Total: -1.13 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.93 Total: 5.06 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.60 Total: -52.04 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.28 Total: -17.46 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.69 -9.38 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123208217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.446 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds