Wall clock time and date at job start Tue Mar 31 2020 18:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47607 * 2 1 4 4 C 1.50706 * 109.46906 * 119.99693 * 2 1 3 5 5 H 1.08002 * 119.99737 * 120.00206 * 4 2 1 6 6 C 1.37871 * 120.00089 * 300.00244 * 4 2 1 7 7 N 1.31514 * 120.00217 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00131 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47221 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46982 * 119.99777 * 8 6 4 11 11 H 1.48498 * 109.46854 * 239.99750 * 8 6 4 12 12 N 1.46505 * 109.47412 * 239.99736 * 2 1 3 13 13 C 1.34771 * 119.99911 * 85.00008 * 12 2 1 14 14 O 1.21595 * 120.00033 * 0.02562 * 13 12 2 15 15 N 1.34775 * 119.99562 * 179.97438 * 13 12 2 16 16 C 1.40208 * 119.99514 * 175.38089 * 15 13 12 17 17 C 1.38836 * 119.99278 * 214.81964 * 16 15 13 18 18 C 1.38074 * 120.00439 * 179.72584 * 17 16 15 19 19 C 1.38889 * 119.99041 * 0.57686 * 18 17 16 20 20 N 1.39922 * 120.00161 * 179.72529 * 19 18 17 21 21 C 1.47011 * 110.99394 * 236.01998 * 20 19 18 22 22 C 1.53102 * 109.25623 * 177.60866 * 21 20 19 23 23 O 1.43015 * 109.25549 * 56.84588 * 22 21 20 24 24 C 1.43014 * 113.74134 * 301.33124 * 23 22 21 25 25 H 1.08999 * 109.50909 * 298.73355 * 24 23 22 26 26 C 1.53006 * 109.50786 * 178.60716 * 24 23 22 27 27 C 1.47012 * 110.99939 * 112.38688 * 20 19 18 28 28 C 1.38878 * 119.99211 * 359.69757 * 19 18 17 29 29 C 1.38071 * 119.99353 * 0.02562 * 28 19 18 30 30 H 1.09004 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46902 * 60.00131 * 1 2 3 32 32 H 1.09001 * 109.47499 * 300.00453 * 1 2 3 33 33 H 0.96992 * 120.00751 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99878 * 265.00194 * 12 2 1 35 35 H 0.96998 * 120.00474 * 355.38637 * 15 13 12 36 36 H 1.07998 * 120.00078 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00892 * 180.25083 * 18 17 16 38 38 H 1.09001 * 109.50910 * 297.53864 * 21 20 19 39 39 H 1.08999 * 109.50935 * 57.63506 * 21 20 19 40 40 H 1.08998 * 109.51140 * 176.78652 * 22 21 20 41 41 H 1.09000 * 109.50777 * 296.87360 * 22 21 20 42 42 H 1.09001 * 109.46983 * 59.99984 * 26 24 23 43 43 H 1.08994 * 109.47204 * 179.97438 * 26 24 23 44 44 H 1.08998 * 109.46840 * 300.00313 * 26 24 23 45 45 H 1.08998 * 109.50762 * 302.32630 * 27 20 19 46 46 H 1.08998 * 109.50563 * 62.45401 * 27 20 19 47 47 H 1.07997 * 120.00128 * 180.02562 * 28 19 18 48 48 H 1.07998 * 119.99795 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.1452 -2.2876 3.6040 10 1 3.1463 -0.1872 4.8166 11 1 1.1657 -1.5865 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1615 -2.4116 15 7 2.5969 -0.6537 -3.4573 16 6 2.6393 0.0187 -4.6869 17 6 2.3854 -0.6715 -5.8645 18 6 2.4215 -0.0083 -7.0750 19 6 2.7237 1.3467 -7.1155 20 7 2.7661 2.0177 -8.3426 21 6 4.0674 2.6725 -8.5403 22 6 4.0917 3.3424 -9.9167 23 8 3.0019 4.2636 -10.0121 24 6 1.7192 3.6595 -9.8252 25 1 1.5539 2.9095 -10.5987 26 6 0.6317 4.7322 -9.9120 27 6 1.6709 2.9928 -8.4479 28 6 2.9833 2.0356 -5.9379 29 6 2.9414 1.3732 -4.7272 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 0.5139 0.8899 33 1 0.7093 1.1619 3.4843 34 1 2.2490 -1.6318 -1.1525 35 1 2.8912 -1.5761 -3.3985 36 1 2.1556 -1.7263 -5.8334 37 1 2.2200 -0.5442 -7.9907 38 1 4.2174 3.4253 -7.7664 39 1 4.8618 1.9283 -8.4830 40 1 5.0328 3.8772 -10.0447 41 1 3.9962 2.5831 -10.6928 42 1 0.6691 5.2091 -10.8914 43 1 -0.3457 4.2711 -9.7699 44 1 0.7969 5.4806 -9.1369 45 1 0.7159 2.4824 -8.3239 46 1 1.7826 3.7507 -7.6725 47 1 3.2179 3.0893 -5.9692 48 1 3.1437 1.9088 -3.8114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160641823.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:09 Heat of formation + Delta-G solvation = -35.998284 kcal Electronic energy + Delta-G solvation = -28198.759179 eV Core-core repulsion = 24253.889016 eV Total energy + Delta-G solvation = -3944.870164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66283 -39.86613 -38.38845 -36.12139 -34.81822 -33.75456 -33.10362 -32.38512 -30.87823 -29.76904 -28.75459 -27.65144 -25.52490 -25.26762 -23.43170 -22.95741 -22.10597 -20.97463 -20.38922 -19.85388 -18.23081 -17.61716 -17.13226 -16.70948 -16.00771 -15.69252 -15.51259 -15.33922 -15.05053 -14.82944 -14.62746 -14.20877 -14.12533 -13.69663 -13.42687 -13.08237 -12.94633 -12.78372 -12.63621 -12.47133 -12.37836 -12.22062 -11.84730 -11.69286 -11.46678 -11.32213 -11.12543 -11.02474 -10.80272 -10.78428 -10.35005 -10.27396 -10.01021 -9.89808 -9.47177 -9.07694 -8.86945 -8.71760 -8.60712 -8.12420 -7.71853 -6.16235 -4.25572 1.27323 1.48625 3.12993 3.21203 3.29437 3.32184 3.39446 3.54473 3.59083 3.97000 4.29136 4.51401 4.66419 4.78731 4.84244 4.84994 4.90196 4.98672 5.05933 5.13956 5.16564 5.24652 5.28802 5.35163 5.41420 5.50894 5.53710 5.61794 5.65678 5.76484 5.84574 5.98301 6.11019 6.44619 6.53554 6.61067 6.62681 6.77044 6.89337 6.94304 6.96757 7.08816 7.20110 7.33893 7.41647 7.58764 7.79141 7.95646 8.11450 8.68648 8.80507 9.18904 9.42871 10.89874 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.002011 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.045217 B =13922.662079 C =14275.596372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.718 5.718 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.698 5.698 16 C 0.182 3.818 17 C -0.151 4.151 18 C -0.074 4.074 19 C 0.051 3.949 20 N -0.496 5.496 21 C 0.019 3.981 22 C 0.066 3.934 23 O -0.384 6.384 24 C 0.090 3.910 25 H 0.067 0.933 26 C -0.146 4.146 27 C 0.027 3.973 28 C -0.126 4.126 29 C -0.111 4.111 30 H 0.026 0.974 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.117 0.883 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 0.149 -24.581 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.369 5.369 13 C 0.393 3.607 14 O -0.460 6.460 15 N -0.346 5.346 16 C 0.086 3.914 17 C -0.172 4.172 18 C -0.094 4.094 19 C -0.043 4.043 20 N -0.217 5.217 21 C -0.108 4.108 22 C -0.011 4.011 23 O -0.303 6.303 24 C 0.032 3.968 25 H 0.085 0.915 26 C -0.203 4.203 27 C -0.100 4.100 28 C -0.147 4.147 29 C -0.132 4.132 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.238 0.762 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.135 0.865 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.474 1.205 -24.745 25.016 hybrid contribution 0.598 -1.120 1.750 2.162 sum 4.072 0.086 -22.995 23.353 Atomic orbital electron populations 1.22104 0.98500 0.99114 1.00953 1.18696 0.90889 0.93748 0.78854 0.93276 1.21235 1.32481 1.13276 0.90210 0.92009 1.24889 0.94814 0.94979 0.99080 1.69908 1.35830 1.22396 1.23859 0.86370 0.78591 0.79488 0.82495 1.19758 1.20854 1.20856 1.45878 1.68484 1.13333 1.09227 1.16170 0.78632 0.85505 0.80414 1.90872 1.57075 1.14089 1.83949 1.42930 1.68510 1.16368 1.06745 1.17634 0.97082 0.92336 0.84392 1.20815 1.04738 1.00425 0.91253 1.20645 0.98935 0.92653 0.97129 1.18641 1.04423 0.93558 0.87702 1.59870 1.03083 1.28128 1.30653 1.22868 0.91626 0.98263 0.98027 1.22648 0.90243 0.92694 0.95540 1.87988 1.14375 1.35261 1.92648 1.22178 0.84060 0.95029 0.95542 0.91504 1.21758 0.96832 0.98609 1.03123 1.22909 0.95293 0.94162 0.97631 1.21464 1.01004 0.99722 0.92526 1.21304 0.99297 0.93862 0.98719 0.95499 0.96599 0.89071 0.92565 0.78135 0.76236 0.85566 0.85399 0.93374 0.89382 0.88347 0.92273 0.91533 0.90778 0.91729 0.89415 0.93346 0.86456 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.15 0.34 -3.33 16 2 C 0.28 7.05 2.56 -69.08 -0.18 6.88 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.72 -14.69 5.07 -59.81 -0.30 -14.99 16 13 C 0.69 13.85 8.37 -86.92 -0.73 13.12 16 14 O -0.58 -13.88 13.44 5.28 0.07 -13.81 16 15 N -0.70 -10.52 5.35 -14.17 -0.08 -10.60 16 16 C 0.18 2.69 6.30 -83.58 -0.53 2.16 16 17 C -0.15 -1.79 9.96 -39.42 -0.39 -2.19 16 18 C -0.07 -0.84 9.96 -39.40 -0.39 -1.24 16 19 C 0.05 0.62 4.74 -83.69 -0.40 0.22 16 20 N -0.50 -5.25 4.70 -170.75 -0.80 -6.05 16 21 C 0.02 0.18 5.31 -3.71 -0.02 0.16 16 22 C 0.07 0.54 7.01 37.21 0.26 0.80 16 23 O -0.38 -3.92 10.47 -35.23 -0.37 -4.29 16 24 C 0.09 0.80 3.43 -26.68 -0.09 0.71 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 C -0.15 -1.07 9.57 37.16 0.36 -0.71 16 27 C 0.03 0.27 4.73 -3.71 -0.02 0.25 16 28 C -0.13 -1.72 8.66 -39.41 -0.34 -2.06 16 29 C -0.11 -1.76 8.69 -39.42 -0.34 -2.10 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.39 6.69 8.56 -40.82 -0.35 6.34 16 35 H 0.40 4.61 8.84 -40.82 -0.36 4.25 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.05 0.49 7.02 -51.93 -0.36 0.12 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.54 7.64 -51.93 -0.40 0.14 16 47 H 0.12 1.50 7.03 -52.49 -0.37 1.13 16 48 H 0.14 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -31.34 386.33 -10.40 -41.74 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.49 Total: 10.72 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.86 Total: 0.09 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.55 Total: -55.68 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.30 Total: -18.10 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.34 -10.40 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160641823.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.739 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds