Wall clock time and date at job start Tue Mar 31 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47607 * 2 1 4 4 C 1.50706 * 109.46906 * 119.99693 * 2 1 3 5 5 H 1.08002 * 119.99737 * 120.00206 * 4 2 1 6 6 C 1.37871 * 120.00089 * 300.00244 * 4 2 1 7 7 N 1.31514 * 120.00217 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00131 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47221 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46982 * 119.99777 * 8 6 4 11 11 H 1.48498 * 109.46854 * 239.99750 * 8 6 4 12 12 N 1.46505 * 109.47412 * 239.99736 * 2 1 3 13 13 C 1.34771 * 119.99911 * 85.00008 * 12 2 1 14 14 O 1.21595 * 120.00033 * 0.02562 * 13 12 2 15 15 N 1.34775 * 119.99562 * 179.97438 * 13 12 2 16 16 C 1.40208 * 119.99514 * 175.38089 * 15 13 12 17 17 C 1.38836 * 119.99278 * 214.81964 * 16 15 13 18 18 C 1.38074 * 120.00439 * 179.72584 * 17 16 15 19 19 C 1.38889 * 119.99041 * 0.57686 * 18 17 16 20 20 N 1.39922 * 120.00161 * 179.72529 * 19 18 17 21 21 C 1.47011 * 110.99394 * 236.01998 * 20 19 18 22 22 C 1.53102 * 109.25623 * 177.60866 * 21 20 19 23 23 O 1.43015 * 109.25549 * 56.84588 * 22 21 20 24 24 C 1.43014 * 113.74134 * 301.33124 * 23 22 21 25 25 H 1.08999 * 109.50909 * 298.73355 * 24 23 22 26 26 C 1.53006 * 109.50786 * 178.60716 * 24 23 22 27 27 C 1.47012 * 110.99939 * 112.38688 * 20 19 18 28 28 C 1.38878 * 119.99211 * 359.69757 * 19 18 17 29 29 C 1.38071 * 119.99353 * 0.02562 * 28 19 18 30 30 H 1.09004 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46902 * 60.00131 * 1 2 3 32 32 H 1.09001 * 109.47499 * 300.00453 * 1 2 3 33 33 H 0.96992 * 120.00751 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99878 * 265.00194 * 12 2 1 35 35 H 0.96998 * 120.00474 * 355.38637 * 15 13 12 36 36 H 1.07998 * 120.00078 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00892 * 180.25083 * 18 17 16 38 38 H 1.09001 * 109.50910 * 297.53864 * 21 20 19 39 39 H 1.08999 * 109.50935 * 57.63506 * 21 20 19 40 40 H 1.08998 * 109.51140 * 176.78652 * 22 21 20 41 41 H 1.09000 * 109.50777 * 296.87360 * 22 21 20 42 42 H 1.09001 * 109.46983 * 59.99984 * 26 24 23 43 43 H 1.08994 * 109.47204 * 179.97438 * 26 24 23 44 44 H 1.08998 * 109.46840 * 300.00313 * 26 24 23 45 45 H 1.08998 * 109.50762 * 302.32630 * 27 20 19 46 46 H 1.08998 * 109.50563 * 62.45401 * 27 20 19 47 47 H 1.07997 * 120.00128 * 180.02562 * 28 19 18 48 48 H 1.07998 * 119.99795 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.1452 -2.2876 3.6040 10 1 3.1463 -0.1872 4.8166 11 1 1.1657 -1.5865 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1615 -2.4116 15 7 2.5969 -0.6537 -3.4573 16 6 2.6393 0.0187 -4.6869 17 6 2.3854 -0.6715 -5.8645 18 6 2.4215 -0.0083 -7.0750 19 6 2.7237 1.3467 -7.1155 20 7 2.7661 2.0177 -8.3426 21 6 4.0674 2.6725 -8.5403 22 6 4.0917 3.3424 -9.9167 23 8 3.0019 4.2636 -10.0121 24 6 1.7192 3.6595 -9.8252 25 1 1.5539 2.9095 -10.5987 26 6 0.6317 4.7322 -9.9120 27 6 1.6709 2.9928 -8.4479 28 6 2.9833 2.0356 -5.9379 29 6 2.9414 1.3732 -4.7272 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 0.5139 0.8899 33 1 0.7093 1.1619 3.4843 34 1 2.2490 -1.6318 -1.1525 35 1 2.8912 -1.5761 -3.3985 36 1 2.1556 -1.7263 -5.8334 37 1 2.2200 -0.5442 -7.9907 38 1 4.2174 3.4253 -7.7664 39 1 4.8618 1.9283 -8.4830 40 1 5.0328 3.8772 -10.0447 41 1 3.9962 2.5831 -10.6928 42 1 0.6691 5.2091 -10.8914 43 1 -0.3457 4.2711 -9.7699 44 1 0.7969 5.4806 -9.1369 45 1 0.7159 2.4824 -8.3239 46 1 1.7826 3.7507 -7.6725 47 1 3.2179 3.0893 -5.9692 48 1 3.1437 1.9088 -3.8114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160641823.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:08 Heat of formation + Delta-G solvation = -57.464675 kcal Electronic energy + Delta-G solvation = -28199.690032 eV Core-core repulsion = 24253.889016 eV Total energy + Delta-G solvation = -3945.801016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76396 -41.04672 -39.49701 -37.33104 -36.49043 -35.08380 -34.23312 -33.77838 -31.94022 -31.18142 -30.02916 -28.62674 -27.35370 -26.38932 -24.28126 -24.13085 -23.37158 -22.26607 -21.53731 -21.22980 -19.82500 -18.85544 -18.12849 -17.82413 -17.42396 -16.93789 -16.69110 -16.43302 -16.15884 -16.03239 -15.80433 -15.58088 -15.30421 -14.98423 -14.65667 -14.43142 -14.19532 -13.94393 -13.70903 -13.60427 -13.48609 -13.15442 -12.99689 -12.95100 -12.88284 -12.75034 -12.55437 -12.33826 -12.29157 -12.14419 -12.12150 -11.52295 -11.33065 -11.10851 -11.04318 -10.65909 -10.62992 -9.92399 -9.86149 -9.62714 -8.94750 -8.18900 -6.36275 0.20316 0.42861 1.44396 1.44953 1.57007 1.74928 2.13399 2.41027 2.61685 2.78045 2.83515 3.11871 3.42393 3.78349 3.88228 3.96122 4.04315 4.10741 4.12706 4.19219 4.36338 4.46131 4.48209 4.51342 4.59478 4.69334 4.71156 4.73845 4.82847 4.89892 4.91228 4.97737 5.06334 5.07519 5.11605 5.27169 5.30457 5.41242 5.49158 5.54484 5.59003 5.65235 5.74719 5.82316 5.87326 6.07690 6.21476 6.24773 6.33713 6.71835 7.21743 7.32709 7.65650 8.87867 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.002011 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.045217 B =13922.662079 C =14275.596372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.002 1.002 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.713 5.713 13 C 0.692 3.308 14 O -0.626 6.626 15 N -0.676 5.676 16 C 0.156 3.844 17 C -0.131 4.131 18 C -0.067 4.067 19 C 0.058 3.942 20 N -0.492 5.492 21 C 0.017 3.983 22 C 0.066 3.934 23 O -0.402 6.402 24 C 0.091 3.909 25 H 0.077 0.923 26 C -0.144 4.144 27 C 0.027 3.973 28 C -0.132 4.132 29 C -0.134 4.134 30 H 0.041 0.959 31 H 0.009 0.991 32 H 0.067 0.933 33 H 0.266 0.734 34 H 0.405 0.595 35 H 0.423 0.577 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.034 0.966 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.030 0.970 47 H 0.114 0.886 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -2.500 -26.642 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.016 0.984 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.366 5.366 13 C 0.392 3.608 14 O -0.507 6.507 15 N -0.326 5.326 16 C 0.061 3.939 17 C -0.152 4.152 18 C -0.087 4.087 19 C -0.036 4.036 20 N -0.213 5.213 21 C -0.110 4.110 22 C -0.010 4.010 23 O -0.321 6.321 24 C 0.034 3.966 25 H 0.095 0.905 26 C -0.201 4.201 27 C -0.100 4.100 28 C -0.153 4.153 29 C -0.156 4.156 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.240 0.760 35 H 0.261 0.739 36 H 0.178 0.822 37 H 0.176 0.824 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.048 0.952 47 H 0.132 0.868 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.948 -1.503 -26.866 27.196 hybrid contribution 0.488 -0.224 2.245 2.309 sum 4.436 -1.727 -24.620 25.076 Atomic orbital electron populations 1.21918 0.98385 0.99497 0.99464 1.18260 0.90914 0.91649 0.80728 0.98393 1.21551 1.32547 1.13591 0.90549 0.90645 1.25820 0.94907 0.95622 1.02390 1.70060 1.37015 1.23927 1.24608 0.85253 0.78053 0.78475 0.78264 1.18249 1.21099 1.20437 1.45442 1.68784 1.13996 1.08343 1.16279 0.78391 0.84956 0.81178 1.90858 1.58821 1.16265 1.84783 1.42529 1.67474 1.16993 1.05561 1.17835 0.98952 0.92137 0.84962 1.21107 1.02481 1.01787 0.89858 1.20997 0.97428 0.92179 0.98048 1.18843 1.03002 0.94176 0.87618 1.60021 1.03773 1.28340 1.29173 1.22947 0.91270 0.98217 0.98518 1.22780 0.90511 0.92904 0.94830 1.87977 1.15158 1.36369 1.92618 1.22253 0.84085 0.95550 0.94746 0.90496 1.21775 0.97063 0.98124 1.03166 1.22946 0.95302 0.93705 0.98081 1.21441 1.01566 0.99717 0.92591 1.21104 1.01521 0.94875 0.98080 0.93951 0.97175 0.91410 0.92525 0.76024 0.73851 0.82171 0.82419 0.94792 0.88401 0.86611 0.91119 0.90787 0.89376 0.92774 0.89068 0.95173 0.86840 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.16 16 2 C 0.29 14.96 2.56 44.24 0.11 15.07 16 3 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 4 C -0.54 -28.48 8.73 25.60 0.22 -28.26 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -52.57 11.32 21.44 0.24 -52.33 16 8 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 9 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.71 -29.38 5.07 -461.41 -2.34 -31.72 16 13 C 0.69 28.28 8.37 179.06 1.50 29.78 16 14 O -0.63 -31.61 13.44 -4.02 -0.05 -31.66 16 15 N -0.68 -19.94 5.35 -317.01 -1.70 -21.63 16 16 C 0.16 4.52 6.30 38.09 0.24 4.76 16 17 C -0.13 -2.73 9.96 22.37 0.22 -2.51 16 18 C -0.07 -1.32 9.96 22.39 0.22 -1.09 16 19 C 0.06 1.32 4.74 38.16 0.18 1.51 16 20 N -0.49 -9.61 4.70 -694.13 -3.26 -12.87 16 21 C 0.02 0.31 5.31 86.32 0.46 0.76 16 22 C 0.07 0.97 7.01 72.02 0.50 1.47 16 23 O -0.40 -7.68 10.47 -148.98 -1.56 -9.24 16 24 C 0.09 1.50 3.43 30.63 0.10 1.60 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 C -0.14 -1.94 9.57 71.98 0.69 -1.25 16 27 C 0.03 0.51 4.73 86.31 0.41 0.92 16 28 C -0.13 -3.71 8.66 22.38 0.19 -3.51 16 29 C -0.13 -4.48 8.69 22.37 0.19 -4.28 16 30 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 33 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.40 13.55 8.56 -92.71 -0.79 12.76 16 35 H 0.42 8.80 8.84 -92.71 -0.82 7.98 16 36 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.03 0.69 7.02 -2.39 -0.02 0.68 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.03 0.69 7.64 -2.39 -0.02 0.67 16 47 H 0.11 3.14 7.03 -2.91 -0.02 3.12 16 48 H 0.11 4.33 6.22 -2.91 -0.02 4.31 16 Total: -1.00 -70.89 386.33 -0.91 -71.79 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.63 Total: 34.05 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.37 Total: 9.93 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -7.06 Total: -118.55 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.61 Total: -40.90 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.89 -0.91 -71.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160641823.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.326 kcal (2) G-P(sol) polarization free energy of solvation -70.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds