Wall clock time and date at job start Tue Mar 31 2020 18:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.54378 * 2 1 4 4 C 1.53101 * 109.50648 * 239.88554 * 2 1 3 5 5 N 1.47010 * 109.25599 * 183.21654 * 4 2 1 6 6 C 1.39195 * 110.99621 * 182.39179 * 5 4 2 7 7 C 1.39420 * 120.83323 * 236.36600 * 6 5 4 8 8 C 1.38231 * 119.26377 * 179.97438 * 7 6 5 9 9 N 1.31647 * 120.99458 * 359.97438 * 8 7 6 10 10 C 1.32825 * 121.82877 * 0.02562 * 9 8 7 11 11 C 1.48189 * 119.69304 * 179.97438 * 10 9 8 12 12 O 1.21514 * 120.00262 * 172.55324 * 11 10 9 13 13 N 1.34780 * 119.99617 * 352.55698 * 11 10 9 14 14 C 1.46498 * 120.00044 * 2.11265 * 13 11 10 15 15 C 1.46501 * 119.99831 * 182.11251 * 13 11 10 16 16 C 1.50700 * 109.46955 * 90.00093 * 15 13 11 17 17 H 1.07996 * 120.00299 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99442 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99684 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00491 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47320 * 89.99877 * 20 18 16 22 22 H 1.48499 * 109.47021 * 209.99920 * 20 18 16 23 23 H 1.48504 * 109.46784 * 329.99731 * 20 18 16 24 24 C 1.39039 * 120.62287 * 359.73913 * 10 9 8 25 25 C 1.47015 * 110.75287 * 58.61869 * 5 4 2 26 26 C 1.53093 * 109.26014 * 301.38304 * 25 5 4 27 27 H 1.09007 * 109.50531 * 296.91419 * 26 25 5 28 28 C 1.52996 * 109.54383 * 176.80566 * 26 25 5 29 29 O 1.43011 * 109.50507 * 120.10594 * 2 1 3 30 30 H 1.08999 * 109.46826 * 299.89721 * 1 2 3 31 31 H 1.09006 * 109.46986 * 59.89330 * 1 2 3 32 32 H 1.09000 * 109.47319 * 179.89337 * 1 2 3 33 33 H 1.09002 * 109.50577 * 303.15682 * 4 2 1 34 34 H 1.09003 * 109.50290 * 63.28316 * 4 2 1 35 35 H 1.07995 * 120.36770 * 359.95821 * 7 6 5 36 36 H 1.07998 * 119.50045 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.47489 * 83.81523 * 14 13 11 38 38 H 1.08999 * 109.47049 * 203.81852 * 14 13 11 39 39 H 1.09007 * 109.47160 * 323.81861 * 14 13 11 40 40 H 1.09004 * 109.46630 * 209.99834 * 15 13 11 41 41 H 1.08997 * 109.46840 * 329.99989 * 15 13 11 42 42 H 0.96998 * 120.00530 * 180.02562 * 19 18 16 43 43 H 1.07993 * 120.52348 * 180.26602 * 24 10 9 44 44 H 1.09000 * 109.50600 * 181.44387 * 25 5 4 45 45 H 1.09003 * 109.50280 * 61.31393 * 25 5 4 46 46 H 1.09001 * 109.46998 * 300.18867 * 28 26 25 47 47 H 1.08994 * 109.47226 * 60.19671 * 28 26 25 48 48 H 1.09003 * 109.47163 * 180.19697 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7241 -1.2483 5 7 3.5093 -0.7886 -1.2044 6 6 4.0165 -1.3936 -2.3507 7 6 4.8409 -2.5145 -2.2620 8 6 5.3262 -3.0898 -3.4214 9 7 5.0208 -2.5956 -4.6028 10 6 4.2393 -1.5298 -4.7354 11 6 3.9265 -1.0127 -6.0885 12 8 3.1076 -0.1255 -6.2257 13 7 4.5504 -1.5266 -7.1671 14 6 5.5034 -2.6277 -7.0066 15 6 4.2756 -0.9841 -8.4999 16 6 5.2366 0.1391 -8.7930 17 1 5.9777 0.4209 -8.0597 18 6 5.1697 0.8069 -9.9974 19 7 6.0081 1.7874 -10.2530 20 14 3.8875 0.3199 -11.2655 21 1 2.6480 1.1070 -11.0436 22 1 4.4102 0.5934 -12.6283 23 1 3.5850 -1.1279 -11.1327 24 6 3.7079 -0.8975 -3.6169 25 6 3.9639 -1.4885 0.0059 26 6 3.4334 -0.7568 1.2417 27 1 3.8534 0.2484 1.2777 28 6 3.8358 -1.5241 2.5027 29 8 2.0075 -0.6762 1.1662 30 1 -0.3633 0.5122 0.8909 31 1 -0.3633 0.5155 -0.8891 32 1 -0.3634 -1.0276 -0.0019 33 1 1.6331 -1.7344 -1.2759 34 1 1.7273 -0.1796 -2.1390 35 1 5.0978 -2.9284 -1.2982 36 1 5.9648 -3.9584 -3.3572 37 1 4.9634 -3.5740 -6.9753 38 1 6.1974 -2.6330 -7.8471 39 1 6.0585 -2.4953 -6.0778 40 1 4.3979 -1.7706 -9.2446 41 1 3.2537 -0.6064 -8.5347 42 1 5.9608 2.2575 -11.1002 43 1 3.0693 -0.0336 -3.7269 44 1 5.0535 -1.5021 0.0308 45 1 3.5865 -2.5110 -0.0016 46 1 3.4167 -2.5297 2.4654 47 1 4.9225 -1.5852 2.5597 48 1 3.4545 -1.0041 3.3816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188748918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:48 Heat of formation + Delta-G solvation = -9.734999 kcal Electronic energy + Delta-G solvation = -28925.826807 eV Core-core repulsion = 24982.095505 eV Total energy + Delta-G solvation = -3943.731302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21589 -39.89296 -38.41309 -36.48970 -34.95481 -34.25539 -32.55336 -31.58588 -31.44166 -30.14750 -28.44979 -27.42471 -26.09399 -25.57170 -24.16386 -22.80467 -22.16828 -21.80288 -20.88044 -19.18409 -17.47365 -17.24202 -16.91511 -16.82611 -16.24042 -15.80987 -15.71391 -15.28056 -15.22475 -14.84235 -14.66899 -14.25646 -14.10637 -13.93689 -13.51198 -13.28553 -13.04533 -12.95454 -12.56379 -12.44149 -12.38639 -12.29897 -12.21845 -12.14292 -11.93055 -11.63620 -11.42026 -11.39443 -10.97067 -10.91997 -10.75521 -10.49634 -10.13149 -9.89246 -9.66408 -9.44339 -9.19511 -8.86409 -8.56246 -8.53862 -7.62025 -6.05902 -4.04770 0.76219 1.13945 2.98892 3.20097 3.27791 3.31975 3.37776 3.39492 3.72648 4.08916 4.21423 4.33174 4.36662 4.42264 4.45934 4.61387 4.68650 4.75763 4.78763 4.91671 4.96380 5.04636 5.09353 5.12424 5.16646 5.22388 5.27482 5.33608 5.45937 5.47670 5.54844 5.63373 5.65614 5.70776 5.79061 5.83254 6.09048 6.22332 6.27422 6.43659 6.64659 6.74366 6.79964 6.85970 6.95781 7.38351 7.62686 7.83221 8.26167 8.48753 8.89049 8.98919 9.53878 11.07491 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.002595 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.212024 B =10788.106692 C =11570.701806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.072 0.928 4 C 0.024 3.976 5 N -0.485 5.485 6 C 0.145 3.855 7 C -0.214 4.214 8 C 0.115 3.885 9 N -0.466 5.466 10 C 0.119 3.881 11 C 0.555 3.445 12 O -0.537 6.537 13 N -0.571 5.571 14 C 0.082 3.918 15 C 0.212 3.788 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.135 4.135 25 C 0.019 3.981 26 C 0.089 3.911 27 H 0.070 0.930 28 C -0.144 4.144 29 O -0.378 6.378 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.034 0.966 41 H 0.038 0.962 42 H 0.265 0.735 43 H 0.149 0.851 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -10.782 25.548 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.089 0.911 4 C -0.101 4.101 5 N -0.200 5.200 6 C 0.039 3.961 7 C -0.237 4.237 8 C -0.044 4.044 9 N -0.180 5.180 10 C -0.019 4.019 11 C 0.340 3.660 12 O -0.414 6.414 13 N -0.300 5.300 14 C -0.061 4.061 15 C 0.092 3.908 16 C -0.567 4.567 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.158 4.158 25 C -0.108 4.108 26 C 0.031 3.969 27 H 0.088 0.912 28 C -0.201 4.201 29 O -0.298 6.298 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.166 0.834 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.421 -10.120 24.727 27.262 hybrid contribution -0.680 -0.335 -0.243 0.796 sum -6.100 -10.455 24.484 27.312 Atomic orbital electron populations 1.21757 0.92131 1.03219 1.03145 1.22190 0.95308 0.95725 0.83574 0.91054 1.23067 0.84588 1.01638 1.00847 1.59016 1.10162 1.49790 1.01003 1.19082 0.95653 0.91045 0.90352 1.22338 1.03853 0.96536 1.01015 1.22769 0.96369 0.98082 0.87159 1.68297 1.12139 1.11476 1.26104 1.21414 0.93532 0.92181 0.94780 1.17760 0.82462 0.82679 0.83092 1.90747 1.34951 1.30433 1.85300 1.47739 1.40706 1.33859 1.07715 1.22205 0.92608 0.87911 1.03385 1.19776 0.97979 0.94807 0.78249 1.21317 1.17018 1.15646 1.02691 0.90710 1.24854 0.95652 0.94536 0.97960 1.69897 1.37093 1.22268 1.24333 0.86840 0.82281 0.79604 0.80934 1.19872 1.21045 1.18996 1.21721 1.02356 1.01692 0.90033 1.23066 1.01883 0.96816 0.89067 1.22169 0.81446 0.99304 0.93992 0.91233 1.21743 1.01566 1.00740 0.96095 1.88005 1.20683 1.78394 1.42714 0.91253 0.90434 0.91720 0.92535 0.88240 0.84503 0.82212 0.93707 0.92010 0.88481 0.94858 0.94401 0.92557 0.83373 0.88666 0.92347 0.91714 0.90702 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.57 37.16 0.36 -0.67 16 2 C 0.09 0.78 3.43 -26.68 -0.09 0.69 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.02 0.24 4.69 -3.71 -0.02 0.22 16 5 N -0.48 -5.15 4.77 -170.63 -0.81 -5.97 16 6 C 0.14 1.78 5.65 -83.62 -0.47 1.31 16 7 C -0.21 -2.23 8.89 -39.14 -0.35 -2.58 16 8 C 0.12 1.30 11.17 -17.63 -0.20 1.10 16 9 N -0.47 -7.07 6.04 -9.89 -0.06 -7.13 16 10 C 0.12 2.10 6.62 -83.05 -0.55 1.55 16 11 C 0.56 12.36 7.66 -12.17 -0.09 12.26 16 12 O -0.54 -13.59 15.91 5.35 0.09 -13.51 16 13 N -0.57 -12.85 2.86 -183.95 -0.53 -13.38 16 14 C 0.08 1.49 9.30 59.85 0.56 2.04 16 15 C 0.21 5.42 4.22 -5.19 -0.02 5.40 16 16 C -0.53 -15.63 9.94 -34.44 -0.34 -15.98 16 17 H 0.07 2.43 8.06 -52.49 -0.42 2.01 16 18 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 19 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 20 Si 0.88 21.89 27.47 -169.99 -4.67 17.23 16 21 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 C -0.13 -2.09 8.80 -38.83 -0.34 -2.43 16 25 C 0.02 0.15 3.63 -3.71 -0.01 0.14 16 26 C 0.09 0.69 3.42 -26.68 -0.09 0.60 16 27 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 28 C -0.14 -0.80 9.57 37.16 0.36 -0.44 16 29 O -0.38 -3.57 10.11 -35.23 -0.36 -3.93 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 1.00 6.92 -51.93 -0.36 0.64 16 35 H 0.14 1.02 5.96 -52.49 -0.31 0.70 16 36 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 39 H 0.10 1.66 5.26 -52.07 -0.27 1.39 16 40 H 0.03 0.81 7.13 -51.93 -0.37 0.44 16 41 H 0.04 1.01 6.82 -51.93 -0.35 0.66 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.15 2.36 6.87 -52.49 -0.36 2.00 16 44 H 0.10 0.67 7.26 -51.93 -0.38 0.29 16 45 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -35.40 381.56 -8.68 -44.08 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.46 Total: -1.09 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.41 Total: 5.28 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.63 Total: -53.81 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.27 Total: -17.43 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.40 -8.68 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188748918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.345 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds