Wall clock time and date at job start Tue Mar 31 2020 18:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.50697 * 2 1 4 4 C 1.53090 * 109.50843 * 120.08467 * 2 1 3 5 5 N 1.47019 * 109.25593 * 63.13032 * 4 2 1 6 6 C 1.38465 * 110.99929 * 182.39419 * 5 4 2 7 7 C 1.39403 * 119.53598 * 179.72638 * 6 5 4 8 8 C 1.36854 * 119.37715 * 179.76770 * 7 6 5 9 9 C 1.40356 * 118.48984 * 0.49553 * 8 7 6 10 10 C 1.47544 * 120.47214 * 179.76809 * 9 8 7 11 11 O 1.21586 * 120.00072 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99775 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99914 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47178 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47018 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00431 * 0.02562 * 15 14 13 17 17 C 1.37886 * 120.00086 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00368 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99620 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46841 * 90.00033 * 19 17 15 21 21 H 1.48493 * 109.46986 * 209.99601 * 19 17 15 22 22 H 1.48498 * 109.47119 * 329.99838 * 19 17 15 23 23 C 1.39558 * 119.05011 * 359.74746 * 9 8 7 24 24 N 1.31678 * 120.51818 * 0.02562 * 23 9 8 25 25 C 1.47012 * 110.75380 * 58.61501 * 5 4 2 26 26 C 1.53097 * 109.25896 * 301.38786 * 25 5 4 27 27 H 1.09004 * 109.50172 * 296.91274 * 26 25 5 28 28 C 1.53002 * 109.50635 * 176.78273 * 26 25 5 29 29 O 1.43012 * 109.26123 * 56.84652 * 26 25 5 30 30 H 1.09002 * 109.47556 * 299.91778 * 1 2 3 31 31 H 1.09010 * 109.47410 * 59.91351 * 1 2 3 32 32 H 1.08993 * 109.47290 * 179.90966 * 1 2 3 33 33 H 1.09007 * 109.51039 * 303.19797 * 4 2 1 34 34 H 1.09001 * 109.51237 * 183.06303 * 4 2 1 35 35 H 1.07997 * 120.30919 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.75511 * 180.22500 * 8 7 6 37 37 H 0.97000 * 119.99976 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47532 * 300.00088 * 13 12 10 39 39 H 1.09002 * 109.47245 * 59.99799 * 13 12 10 40 40 H 1.09003 * 109.47077 * 299.99718 * 14 13 12 41 41 H 1.09002 * 109.47161 * 59.99791 * 14 13 12 42 42 H 0.96997 * 119.99955 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.73888 * 179.97438 * 23 9 8 44 44 H 1.09007 * 109.50513 * 61.31897 * 25 5 4 45 45 H 1.08997 * 109.50543 * 181.44498 * 25 5 4 46 46 H 1.09004 * 109.46944 * 300.21194 * 28 26 25 47 47 H 1.08998 * 109.46968 * 60.21535 * 28 26 25 48 48 H 1.09000 * 109.46898 * 180.21740 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 1.2486 5 7 1.6118 -2.1288 1.2047 6 6 2.0101 -2.8052 2.3453 7 6 1.6895 -4.1539 2.4917 8 6 2.0890 -4.8205 3.6182 9 6 2.8035 -4.1125 4.5971 10 6 3.2510 -4.7867 5.8309 11 8 3.0008 -5.9637 6.0055 12 7 3.9370 -4.0978 6.7644 13 6 4.3817 -4.7673 7.9891 14 6 5.1321 -3.7686 8.8726 15 6 5.5890 -4.4572 10.1328 16 1 5.3669 -5.5026 10.2879 17 6 6.2917 -3.7527 11.0874 18 7 6.6909 -4.3537 12.1869 19 14 6.6765 -1.9446 10.8188 20 1 5.5763 -1.1165 11.3749 21 1 7.9486 -1.6022 11.5039 22 1 6.8103 -1.6778 9.3641 23 6 3.0851 -2.7620 4.3865 24 7 2.6860 -2.1595 3.2857 25 6 2.1202 -2.7912 -0.0053 26 6 1.6082 -2.0470 -1.2413 27 1 0.5204 -2.1072 -1.2778 28 6 2.1985 -2.6830 -2.5015 29 8 2.0084 -0.6761 -1.1660 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6325 -0.2456 2.1391 34 1 3.1298 -0.6761 1.2766 35 1 1.1340 -4.6687 1.7219 36 1 1.8558 -5.8664 3.7530 37 1 4.1368 -3.1589 6.6249 38 1 3.5158 -5.1510 8.5285 39 1 5.0445 -5.5934 7.7315 40 1 5.9982 -3.3854 8.3330 41 1 4.4696 -2.9422 9.1303 42 1 7.1855 -3.8582 12.8582 43 1 3.6338 -2.2064 5.1326 44 1 3.2101 -2.7770 0.0027 45 1 1.7692 -3.8228 -0.0301 46 1 3.2863 -2.6239 -2.4629 47 1 1.8932 -3.7278 -2.5583 48 1 1.8367 -2.1503 -3.3809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272990063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:57 Heat of formation + Delta-G solvation = -36.500837 kcal Electronic energy + Delta-G solvation = -28038.724173 eV Core-core repulsion = 24093.832217 eV Total energy + Delta-G solvation = -3944.891956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43907 -40.10702 -38.86449 -36.17649 -35.13150 -34.00956 -32.92899 -32.74169 -31.55777 -30.51322 -29.49284 -27.53915 -26.26892 -24.82780 -24.07705 -23.19074 -22.41985 -20.88856 -20.50937 -19.96989 -18.28896 -17.46217 -17.34758 -16.90551 -16.56439 -15.95388 -15.79075 -15.33565 -15.12567 -15.09792 -14.85467 -14.62120 -14.19541 -14.00367 -13.71562 -13.53155 -13.24807 -13.17817 -12.94096 -12.85542 -12.65682 -12.61936 -12.40816 -12.19883 -11.92057 -11.57114 -11.51980 -11.25292 -10.86850 -10.59011 -10.43088 -10.41196 -10.20469 -10.03783 -9.96284 -9.84641 -9.55103 -9.33751 -8.74306 -8.62811 -8.44341 -6.13045 -4.13453 0.44118 1.00019 2.72713 3.05278 3.23857 3.23960 3.31741 3.32626 3.44186 3.71302 3.93586 4.22550 4.32828 4.35847 4.47497 4.54822 4.62511 4.63746 4.67614 4.77383 4.83731 4.88312 4.93167 5.06553 5.09388 5.19737 5.23339 5.28155 5.33608 5.44455 5.49098 5.55737 5.61815 5.64375 5.83462 5.84384 6.03075 6.08865 6.15747 6.15882 6.51271 6.63712 6.66177 6.72442 7.08430 7.19050 7.55487 7.63424 7.78070 8.38560 8.44929 8.91082 9.46807 10.99863 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.002088 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.373420 B =13405.226570 C =14322.602371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.111 0.889 4 C 0.035 3.965 5 N -0.473 5.473 6 C 0.327 3.673 7 C -0.192 4.192 8 C 0.003 3.997 9 C -0.206 4.206 10 C 0.557 3.443 11 O -0.543 6.543 12 N -0.720 5.720 13 C 0.130 3.870 14 C -0.023 4.023 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.162 3.838 24 N -0.521 5.521 25 C 0.027 3.973 26 C 0.087 3.913 27 H 0.074 0.926 28 C -0.146 4.146 29 O -0.375 6.375 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.395 0.605 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.265 0.735 43 H 0.162 0.838 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 7.849 -30.600 33.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.129 0.871 4 C -0.092 4.092 5 N -0.190 5.190 6 C 0.095 3.905 7 C -0.215 4.215 8 C -0.023 4.023 9 C -0.213 4.213 10 C 0.343 3.657 11 O -0.421 6.421 12 N -0.370 5.370 13 C 0.008 3.992 14 C -0.061 4.061 15 C -0.562 4.562 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C 0.003 3.997 24 N -0.235 5.235 25 C -0.099 4.099 26 C 0.028 3.972 27 H 0.091 0.909 28 C -0.203 4.203 29 O -0.294 6.294 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.229 0.771 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.179 0.821 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.660 8.014 -30.613 34.083 hybrid contribution 0.721 0.493 0.555 1.034 sum -11.939 8.507 -30.058 33.443 Atomic orbital electron populations 1.22314 0.95417 1.03351 1.02431 1.22395 0.94490 0.96340 0.83962 0.87115 1.22727 1.00329 0.86463 0.99669 1.59127 1.55132 1.04009 1.00717 1.19940 0.89450 0.89971 0.91165 1.21244 1.05601 0.93976 1.00633 1.21321 0.90105 1.00730 0.90170 1.21023 1.06215 0.95940 0.98072 1.17919 0.78556 0.86485 0.82774 1.90772 1.56906 1.15611 1.78838 1.46265 1.55836 1.14152 1.20708 1.21569 0.98772 0.96493 0.82375 1.19808 0.95360 0.95179 0.95707 1.20900 1.35719 0.98881 1.00679 0.90581 1.25007 0.95082 0.98364 0.94849 1.69900 1.38237 1.36806 1.08613 0.86754 0.78031 0.85546 0.78765 1.20197 1.21253 1.19058 1.22823 0.93019 0.90833 0.92986 1.67646 1.13010 1.39340 1.03533 1.23057 0.99356 0.99287 0.88201 1.22179 0.99297 0.81922 0.93755 0.90864 1.21758 1.02032 1.00419 0.96103 1.88076 1.75505 1.22823 1.43009 0.91424 0.92096 0.91244 0.88316 0.91951 0.84126 0.83276 0.77111 0.91661 0.91663 0.95934 0.96357 0.92524 0.82068 0.92392 0.88616 0.91657 0.90704 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 8.89 37.16 0.33 -0.80 16 2 C 0.09 0.62 3.92 -26.69 -0.10 0.51 16 3 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.04 0.30 4.22 -3.71 -0.02 0.28 16 5 N -0.47 -4.12 4.11 -172.92 -0.71 -4.83 16 6 C 0.33 3.42 6.39 -155.28 -0.99 2.43 16 7 C -0.19 -1.84 9.15 -39.65 -0.36 -2.21 16 8 C 0.00 0.04 9.65 -39.29 -0.38 -0.34 16 9 C -0.21 -2.68 5.89 -104.81 -0.62 -3.30 16 10 C 0.56 9.11 7.77 -12.46 -0.10 9.02 16 11 O -0.54 -10.77 16.41 5.29 0.09 -10.68 16 12 N -0.72 -11.66 5.51 -61.35 -0.34 -12.00 16 13 C 0.13 2.60 5.61 -4.05 -0.02 2.58 16 14 C -0.02 -0.51 4.16 -27.89 -0.12 -0.63 16 15 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 16 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 19 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 23 C 0.16 1.89 10.71 -17.13 -0.18 1.70 16 24 N -0.52 -6.05 8.67 -12.14 -0.11 -6.15 16 25 C 0.03 0.19 4.67 -3.71 -0.02 0.17 16 26 C 0.09 0.56 3.03 -26.68 -0.08 0.48 16 27 H 0.07 0.45 6.49 -51.93 -0.34 0.11 16 28 C -0.15 -0.70 9.57 37.16 0.36 -0.35 16 29 O -0.37 -3.12 10.28 -35.23 -0.36 -3.48 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.07 0.49 6.13 -51.93 -0.32 0.17 16 33 H 0.10 0.88 7.85 -51.92 -0.41 0.47 16 34 H 0.06 0.60 8.02 -51.93 -0.42 0.19 16 35 H 0.14 0.98 7.18 -52.49 -0.38 0.61 16 36 H 0.15 1.62 7.73 -52.49 -0.41 1.21 16 37 H 0.39 5.27 6.52 -40.82 -0.27 5.00 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 41 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.16 1.56 6.41 -52.49 -0.34 1.22 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.53 6.81 -51.93 -0.35 0.17 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -33.23 383.39 -9.66 -42.89 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.38 Total: 2.08 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.73 Total: -3.43 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.38 Total: -49.35 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.28 Total: -14.16 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.23 -9.66 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272990063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.387 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds