Wall clock time and date at job start Tue Mar 31 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.50697 * 2 1 4 4 C 1.53090 * 109.50843 * 120.08467 * 2 1 3 5 5 N 1.47019 * 109.25593 * 63.13032 * 4 2 1 6 6 C 1.38465 * 110.99929 * 182.39419 * 5 4 2 7 7 C 1.39403 * 119.53598 * 179.72638 * 6 5 4 8 8 C 1.36854 * 119.37715 * 179.76770 * 7 6 5 9 9 C 1.40356 * 118.48984 * 0.49553 * 8 7 6 10 10 C 1.47544 * 120.47214 * 179.76809 * 9 8 7 11 11 O 1.21586 * 120.00072 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99775 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99914 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47178 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47018 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00431 * 0.02562 * 15 14 13 17 17 C 1.37886 * 120.00086 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00368 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99620 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46841 * 90.00033 * 19 17 15 21 21 H 1.48493 * 109.46986 * 209.99601 * 19 17 15 22 22 H 1.48498 * 109.47119 * 329.99838 * 19 17 15 23 23 C 1.39558 * 119.05011 * 359.74746 * 9 8 7 24 24 N 1.31678 * 120.51818 * 0.02562 * 23 9 8 25 25 C 1.47012 * 110.75380 * 58.61501 * 5 4 2 26 26 C 1.53097 * 109.25896 * 301.38786 * 25 5 4 27 27 H 1.09004 * 109.50172 * 296.91274 * 26 25 5 28 28 C 1.53002 * 109.50635 * 176.78273 * 26 25 5 29 29 O 1.43012 * 109.26123 * 56.84652 * 26 25 5 30 30 H 1.09002 * 109.47556 * 299.91778 * 1 2 3 31 31 H 1.09010 * 109.47410 * 59.91351 * 1 2 3 32 32 H 1.08993 * 109.47290 * 179.90966 * 1 2 3 33 33 H 1.09007 * 109.51039 * 303.19797 * 4 2 1 34 34 H 1.09001 * 109.51237 * 183.06303 * 4 2 1 35 35 H 1.07997 * 120.30919 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.75511 * 180.22500 * 8 7 6 37 37 H 0.97000 * 119.99976 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47532 * 300.00088 * 13 12 10 39 39 H 1.09002 * 109.47245 * 59.99799 * 13 12 10 40 40 H 1.09003 * 109.47077 * 299.99718 * 14 13 12 41 41 H 1.09002 * 109.47161 * 59.99791 * 14 13 12 42 42 H 0.96997 * 119.99955 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.73888 * 179.97438 * 23 9 8 44 44 H 1.09007 * 109.50513 * 61.31897 * 25 5 4 45 45 H 1.08997 * 109.50543 * 181.44498 * 25 5 4 46 46 H 1.09004 * 109.46944 * 300.21194 * 28 26 25 47 47 H 1.08998 * 109.46968 * 60.21535 * 28 26 25 48 48 H 1.09000 * 109.46898 * 180.21740 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 1.2486 5 7 1.6118 -2.1288 1.2047 6 6 2.0101 -2.8052 2.3453 7 6 1.6895 -4.1539 2.4917 8 6 2.0890 -4.8205 3.6182 9 6 2.8035 -4.1125 4.5971 10 6 3.2510 -4.7867 5.8309 11 8 3.0008 -5.9637 6.0055 12 7 3.9370 -4.0978 6.7644 13 6 4.3817 -4.7673 7.9891 14 6 5.1321 -3.7686 8.8726 15 6 5.5890 -4.4572 10.1328 16 1 5.3669 -5.5026 10.2879 17 6 6.2917 -3.7527 11.0874 18 7 6.6909 -4.3537 12.1869 19 14 6.6765 -1.9446 10.8188 20 1 5.5763 -1.1165 11.3749 21 1 7.9486 -1.6022 11.5039 22 1 6.8103 -1.6778 9.3641 23 6 3.0851 -2.7620 4.3865 24 7 2.6860 -2.1595 3.2857 25 6 2.1202 -2.7912 -0.0053 26 6 1.6082 -2.0470 -1.2413 27 1 0.5204 -2.1072 -1.2778 28 6 2.1985 -2.6830 -2.5015 29 8 2.0084 -0.6761 -1.1660 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6325 -0.2456 2.1391 34 1 3.1298 -0.6761 1.2766 35 1 1.1340 -4.6687 1.7219 36 1 1.8558 -5.8664 3.7530 37 1 4.1368 -3.1589 6.6249 38 1 3.5158 -5.1510 8.5285 39 1 5.0445 -5.5934 7.7315 40 1 5.9982 -3.3854 8.3330 41 1 4.4696 -2.9422 9.1303 42 1 7.1855 -3.8582 12.8582 43 1 3.6338 -2.2064 5.1326 44 1 3.2101 -2.7770 0.0027 45 1 1.7692 -3.8228 -0.0301 46 1 3.2863 -2.6239 -2.4629 47 1 1.8932 -3.7278 -2.5583 48 1 1.8367 -2.1503 -3.3809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272990063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:56 Heat of formation + Delta-G solvation = -59.355570 kcal Electronic energy + Delta-G solvation = -28039.715229 eV Core-core repulsion = 24093.832217 eV Total energy + Delta-G solvation = -3945.883012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21923 -41.02449 -39.93278 -36.92233 -36.71557 -34.85495 -34.53536 -33.60378 -32.70556 -31.66224 -30.50599 -28.09777 -27.37147 -26.22745 -24.84313 -24.04737 -23.19457 -22.61687 -21.71950 -20.54312 -19.24560 -19.01435 -18.40062 -18.06734 -17.29131 -16.71009 -16.65418 -16.45952 -16.34482 -16.12534 -15.87399 -15.66967 -15.45103 -15.15515 -14.87948 -14.57096 -14.47446 -14.19507 -13.94129 -13.76369 -13.36045 -13.32905 -13.16053 -13.05064 -12.90254 -12.73472 -12.42732 -12.24670 -12.18195 -12.10187 -11.76790 -11.53884 -11.43769 -11.34166 -11.17871 -11.05781 -10.78882 -10.60447 -10.47562 -10.14493 -9.29603 -8.29956 -6.37179 -0.47894 0.16589 1.39447 1.41847 1.52900 1.70067 2.13095 2.24503 2.36769 2.73018 2.75536 3.05088 3.17655 3.65247 3.65768 3.74773 3.79211 3.86173 3.96704 4.02210 4.06065 4.16533 4.31390 4.35945 4.39361 4.41781 4.53615 4.54091 4.61607 4.71027 4.72811 4.74168 4.83040 4.96857 5.01291 5.02565 5.07887 5.11605 5.21419 5.28196 5.35823 5.38323 5.39888 5.46597 5.62357 5.89063 6.20601 6.21642 6.49903 6.70474 6.72148 7.14631 7.27253 8.86625 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.002088 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.373420 B =13405.226570 C =14322.602371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.121 0.879 4 C 0.039 3.961 5 N -0.470 5.470 6 C 0.326 3.674 7 C -0.183 4.183 8 C 0.000 4.000 9 C -0.224 4.224 10 C 0.560 3.440 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.145 3.855 14 C -0.014 4.014 15 C -0.538 4.538 16 H 0.030 0.970 17 C 0.003 3.997 18 N -0.950 5.950 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.236 1.236 23 C 0.169 3.831 24 N -0.534 5.534 25 C 0.027 3.973 26 C 0.085 3.915 27 H 0.080 0.920 28 C -0.143 4.143 29 O -0.391 6.391 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.171 0.829 36 H 0.151 0.849 37 H 0.411 0.589 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.268 0.732 43 H 0.179 0.821 44 H 0.047 0.953 45 H 0.116 0.884 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.218 10.207 -33.442 37.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 H 0.139 0.861 4 C -0.089 4.089 5 N -0.187 5.187 6 C 0.094 3.906 7 C -0.205 4.205 8 C -0.026 4.026 9 C -0.231 4.231 10 C 0.348 3.652 11 O -0.466 6.466 12 N -0.362 5.362 13 C 0.021 3.979 14 C -0.052 4.052 15 C -0.577 4.577 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.590 5.590 19 Si 0.780 3.220 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.159 1.159 23 C 0.010 3.990 24 N -0.248 5.248 25 C -0.099 4.099 26 C 0.027 3.973 27 H 0.098 0.902 28 C -0.200 4.200 29 O -0.311 6.311 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.188 0.812 36 H 0.168 0.832 37 H 0.249 0.751 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.196 0.804 44 H 0.066 0.934 45 H 0.134 0.866 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.519 10.398 -33.508 37.599 hybrid contribution 0.919 -0.312 1.360 1.671 sum -12.600 10.087 -32.148 35.972 Atomic orbital electron populations 1.22256 0.94651 1.03105 1.02893 1.22459 0.95024 0.96584 0.83040 0.86121 1.22692 0.99423 0.86499 1.00238 1.59165 1.54565 1.04173 1.00747 1.20292 0.88504 0.90428 0.91395 1.21458 1.04991 0.93559 1.00513 1.21428 0.89858 1.00925 0.90385 1.20744 1.08464 0.96668 0.97180 1.18373 0.77467 0.85964 0.83387 1.90749 1.58495 1.17547 1.79814 1.45976 1.55850 1.14890 1.19461 1.21090 0.97540 0.95739 0.83524 1.19671 0.96297 0.95505 0.93720 1.21241 1.35844 0.97405 1.03194 0.95194 1.26085 0.94755 1.04303 0.94241 1.70073 1.39578 1.39306 1.10014 0.85557 0.77818 0.78206 0.80421 1.19017 1.21352 1.15850 1.23024 0.92529 0.90220 0.93272 1.67718 1.13707 1.39603 1.03812 1.23175 0.98781 1.00370 0.87561 1.22325 0.99750 0.81147 0.94058 0.90215 1.21777 1.01486 1.01470 0.95301 1.88067 1.75896 1.23824 1.43315 0.91081 0.91516 0.91783 0.88825 0.93337 0.81182 0.83177 0.75115 0.93390 0.93396 0.94366 0.94505 0.92355 0.80403 0.93423 0.86612 0.92362 0.88784 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 8.89 71.98 0.64 -1.18 16 2 C 0.09 1.09 3.92 30.62 0.12 1.21 16 3 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 4 C 0.04 0.59 4.22 86.31 0.36 0.96 16 5 N -0.47 -7.13 4.11 -701.00 -2.88 -10.00 16 6 C 0.33 6.09 6.39 133.25 0.85 6.94 16 7 C -0.18 -3.04 9.15 22.23 0.20 -2.84 16 8 C 0.00 0.01 9.65 22.46 0.22 0.22 16 9 C -0.22 -5.55 5.89 -19.99 -0.12 -5.67 16 10 C 0.56 18.12 7.77 86.70 0.67 18.79 16 11 O -0.58 -23.60 16.41 -3.99 -0.07 -23.66 16 12 N -0.71 -22.34 5.51 -466.28 -2.57 -24.90 16 13 C 0.14 5.84 5.61 86.38 0.48 6.32 16 14 C -0.01 -0.62 4.16 29.85 0.12 -0.50 16 15 C -0.54 -30.54 9.66 25.60 0.25 -30.29 16 16 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 17 C 0.00 0.19 5.47 84.66 0.46 0.65 16 18 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 19 Si 0.96 42.08 27.47 68.60 1.88 43.96 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 23 C 0.17 3.59 10.71 85.03 0.91 4.50 16 24 N -0.53 -11.34 8.67 -192.32 -1.67 -13.00 16 25 C 0.03 0.31 4.67 86.31 0.40 0.71 16 26 C 0.08 0.90 3.03 30.63 0.09 1.00 16 27 H 0.08 0.76 6.49 -2.39 -0.02 0.74 16 28 C -0.14 -1.05 9.57 71.98 0.69 -0.36 16 29 O -0.39 -5.81 10.28 -148.98 -1.53 -7.34 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.75 6.13 -2.39 -0.01 0.74 16 33 H 0.09 1.53 7.85 -2.38 -0.02 1.51 16 34 H 0.05 0.88 8.02 -2.39 -0.02 0.87 16 35 H 0.17 1.75 7.18 -2.91 -0.02 1.73 16 36 H 0.15 3.13 7.73 -2.91 -0.02 3.10 16 37 H 0.41 10.04 6.52 -92.71 -0.60 9.44 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.57 7.20 -2.39 -0.02 1.56 16 41 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 43 H 0.18 2.99 6.41 -2.91 -0.02 2.97 16 44 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.12 0.87 6.81 -2.39 -0.02 0.85 16 46 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 47 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -74.11 383.39 0.15 -73.97 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.31 Total: 19.32 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 6.37 Total: 0.46 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -6.81 Total: -106.69 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.60 Total: -31.01 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Total: -74.11 0.15 -73.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272990063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.610 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds