Wall clock time and date at job start Tue Mar 31 2020 18:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.53940 * 2 1 4 4 C 1.53094 * 109.50828 * 239.89271 * 2 1 3 5 5 N 1.47016 * 109.25958 * 183.21365 * 4 2 1 6 6 C 1.39915 * 111.00038 * 182.39525 * 5 4 2 7 7 C 1.38885 * 120.00541 * 292.40887 * 6 5 4 8 8 C 1.38068 * 119.99372 * 179.97438 * 7 6 5 9 9 C 1.38830 * 120.00919 * 0.02562 * 8 7 6 10 10 N 1.40199 * 119.99821 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99883 * 35.08964 * 10 9 8 12 12 O 1.21595 * 120.00188 * 355.38119 * 11 10 9 13 13 N 1.34780 * 119.99955 * 175.38789 * 11 10 9 14 14 C 1.46499 * 119.99981 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47105 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47242 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99864 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00173 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00268 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47003 * 60.00119 * 20 18 16 22 22 H 1.48502 * 109.47370 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47389 * 300.00080 * 20 18 16 24 24 C 1.38839 * 120.01045 * 0.25101 * 9 8 7 25 25 C 1.38071 * 119.99995 * 359.45427 * 24 9 8 26 26 C 1.47019 * 110.75283 * 58.61625 * 5 4 2 27 27 C 1.53098 * 109.25777 * 301.38427 * 26 5 4 28 28 O 1.43019 * 109.50783 * 120.10864 * 2 1 3 29 29 H 1.09003 * 109.47492 * 299.88420 * 1 2 3 30 30 H 1.08995 * 109.47574 * 59.89478 * 1 2 3 31 31 H 1.09005 * 109.46863 * 179.89234 * 1 2 3 32 32 H 1.09007 * 109.50995 * 63.28063 * 4 2 1 33 33 H 1.08998 * 109.50828 * 303.15088 * 4 2 1 34 34 H 1.08000 * 120.00076 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.99418 * 180.02562 * 8 7 6 36 36 H 0.97000 * 120.00420 * 215.09712 * 10 9 8 37 37 H 0.97002 * 119.99819 * 359.97438 * 13 11 10 38 38 H 1.09003 * 109.47285 * 59.99713 * 14 13 11 39 39 H 1.08998 * 109.47056 * 299.99766 * 14 13 11 40 40 H 1.08997 * 109.46996 * 300.00287 * 15 14 13 41 41 H 1.09003 * 109.46753 * 60.00037 * 15 14 13 42 42 H 0.96999 * 119.99998 * 179.97438 * 19 18 16 43 43 H 1.07995 * 119.99754 * 179.70303 * 24 9 8 44 44 H 1.08007 * 120.00073 * 180.26257 * 25 24 9 45 45 H 1.09001 * 109.50058 * 61.32071 * 26 5 4 46 46 H 1.08993 * 109.50354 * 181.40537 * 26 5 4 47 47 H 1.08990 * 109.50465 * 176.78117 * 27 26 5 48 48 H 1.08996 * 109.50943 * 296.87352 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2484 5 7 3.5093 -0.7883 -1.2045 6 6 4.0192 -1.3963 -2.3568 7 6 3.7875 -2.7456 -2.5907 8 6 4.2904 -3.3452 -3.7282 9 6 5.0279 -2.5997 -4.6380 10 7 5.5389 -3.2089 -5.7927 11 6 4.8362 -4.1795 -6.4097 12 8 3.8002 -4.5855 -5.9193 13 7 5.2819 -4.7002 -7.5702 14 6 4.5179 -5.7548 -8.2411 15 6 5.2368 -6.1655 -9.5278 16 6 4.4512 -7.2508 -10.2177 17 1 3.5310 -7.6113 -9.7822 18 6 4.9072 -7.7836 -11.4047 19 7 6.0281 -7.3450 -11.9348 20 14 3.9338 -9.1294 -12.2595 21 1 2.5769 -8.6248 -12.5905 22 1 4.6321 -9.5288 -13.5077 23 1 3.8187 -10.3050 -11.3594 24 6 5.2645 -1.2522 -4.4016 25 6 4.7567 -0.6507 -3.2672 26 6 3.9640 -1.4883 0.0058 27 6 3.4335 -0.7568 1.2416 28 8 2.0075 -0.6763 1.1662 29 1 -0.3634 0.5120 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0277 -0.0019 32 1 1.7273 -0.1794 -2.1391 33 1 1.6332 -1.7342 -1.2760 34 1 3.2134 -3.3255 -1.8833 35 1 4.1099 -4.3944 -3.9104 36 1 6.3981 -2.9319 -6.1475 37 1 6.1082 -4.3761 -7.9615 38 1 3.5223 -5.3837 -8.4842 39 1 4.4327 -6.6179 -7.5808 40 1 5.3217 -5.3023 -10.1879 41 1 6.2325 -6.5366 -9.2850 42 1 6.3490 -7.7201 -12.7697 43 1 5.8423 -0.6735 -5.1070 44 1 4.9372 0.3986 -3.0854 45 1 3.5867 -2.5109 -0.0019 46 1 5.0536 -1.5025 0.0302 47 1 3.7201 -1.3041 2.1395 48 1 3.8539 0.2482 1.2782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273123693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:04 Heat of formation + Delta-G solvation = -42.511937 kcal Electronic energy + Delta-G solvation = -27546.515533 eV Core-core repulsion = 23601.362917 eV Total energy + Delta-G solvation = -3945.152617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83272 -40.10619 -38.57746 -36.25184 -34.90022 -34.01638 -33.18584 -32.85590 -31.04754 -30.11739 -29.22778 -27.93361 -25.77306 -24.67103 -23.49389 -23.07768 -21.97419 -21.01345 -20.62760 -20.49004 -18.33497 -17.65776 -17.21869 -16.79097 -16.37418 -15.81911 -15.70979 -15.45538 -15.13857 -14.95058 -14.70544 -14.54518 -14.32945 -13.86006 -13.72073 -13.55297 -13.17524 -13.03778 -12.83861 -12.68795 -12.55791 -12.31384 -12.28836 -11.86502 -11.55032 -11.48371 -11.25291 -11.06509 -10.89148 -10.68715 -10.44437 -10.23647 -10.01966 -9.95405 -9.62592 -9.33185 -9.03115 -8.83896 -8.66456 -8.43270 -7.98767 -6.12665 -4.15738 1.10112 1.32617 2.79310 3.26684 3.29260 3.30414 3.33190 3.36659 3.45023 3.71411 4.33376 4.42598 4.48909 4.57124 4.70716 4.76047 4.77987 4.81467 4.91227 5.05277 5.15514 5.19785 5.22727 5.24474 5.29519 5.39623 5.42889 5.48104 5.53370 5.65551 5.74979 5.83167 5.94893 6.13136 6.30393 6.33246 6.39403 6.43522 6.48219 6.68547 6.77317 6.81473 6.83973 7.06883 7.18072 7.49590 7.56814 7.85519 8.14047 8.27102 8.74971 8.90064 9.49236 10.98842 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.001722 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.250051 B =16252.256051 C =16816.210833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.027 3.973 5 N -0.497 5.497 6 C 0.056 3.944 7 C -0.127 4.127 8 C -0.110 4.110 9 C 0.176 3.824 10 N -0.693 5.693 11 C 0.697 3.303 12 O -0.580 6.580 13 N -0.731 5.731 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.147 4.147 25 C -0.074 4.074 26 C 0.019 3.981 27 C 0.066 3.934 28 O -0.383 6.383 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.406 0.594 37 H 0.395 0.605 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 17.884 24.225 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.100 4.100 5 N -0.218 5.218 6 C -0.039 4.039 7 C -0.147 4.147 8 C -0.132 4.132 9 C 0.080 3.920 10 N -0.341 5.341 11 C 0.397 3.603 12 O -0.458 6.458 13 N -0.384 5.384 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.168 4.168 25 C -0.093 4.093 26 C -0.108 4.108 27 C -0.011 4.011 28 O -0.302 6.302 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.241 0.759 37 H 0.229 0.771 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.117 0.883 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.583 17.810 24.571 30.457 hybrid contribution 0.346 -1.230 -1.292 1.817 sum -2.236 16.580 23.279 28.667 Atomic orbital electron populations 1.21758 0.92633 1.03172 1.02771 1.22178 0.94946 0.95573 0.84122 0.91455 1.22915 0.86703 1.00829 0.99528 1.59872 1.09086 1.52201 1.00655 1.18676 1.00698 0.91524 0.92974 1.21474 1.00360 0.95195 0.97704 1.21262 0.98473 1.01520 0.91904 1.17606 0.97176 0.91092 0.86108 1.42796 1.23517 1.40131 1.27682 1.16071 0.83397 0.79508 0.81299 1.90895 1.24686 1.63477 1.66737 1.45588 1.28349 1.41965 1.22528 1.21677 0.94820 0.87057 0.94836 1.19332 0.96175 0.96997 0.89965 1.20991 1.08442 1.19967 1.06729 0.92244 1.24992 0.95092 0.97038 0.97141 1.69943 1.20899 1.42722 1.19701 0.86556 0.80072 0.82037 0.78773 1.20089 1.21230 1.20100 1.20832 1.04255 0.92430 0.99281 1.20678 0.96329 0.99721 0.92579 1.22875 1.01427 0.96582 0.89896 1.22648 0.81009 1.00378 0.97104 1.87996 1.21012 1.78427 1.42805 0.91478 0.90762 0.91745 0.89386 0.93349 0.86343 0.83901 0.75865 0.77109 0.92522 0.92516 0.95892 0.95894 0.92766 0.85383 0.85215 0.93368 0.89340 0.88294 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.57 37.15 0.36 -0.59 16 2 C 0.09 0.72 3.43 -26.69 -0.09 0.63 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.03 0.24 4.73 -3.71 -0.02 0.23 16 5 N -0.50 -4.68 4.70 -170.74 -0.80 -5.48 16 6 C 0.06 0.59 4.74 -83.69 -0.40 0.20 16 7 C -0.13 -1.51 8.66 -39.40 -0.34 -1.85 16 8 C -0.11 -1.53 8.69 -39.42 -0.34 -1.88 16 9 C 0.18 2.25 6.30 -83.59 -0.53 1.72 16 10 N -0.69 -8.82 5.35 -14.17 -0.08 -8.90 16 11 C 0.70 11.78 8.41 -86.91 -0.73 11.05 16 12 O -0.58 -11.89 13.78 5.28 0.07 -11.82 16 13 N -0.73 -12.36 5.56 -65.22 -0.36 -12.73 16 14 C 0.14 2.89 5.61 -4.04 -0.02 2.87 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.15 -1.51 9.96 -39.42 -0.39 -1.90 16 25 C -0.07 -0.73 9.96 -39.41 -0.39 -1.13 16 26 C 0.02 0.16 5.32 -3.71 -0.02 0.14 16 27 C 0.07 0.48 7.01 37.21 0.26 0.74 16 28 O -0.38 -3.58 10.47 -35.23 -0.37 -3.95 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.05 0.48 7.64 -51.93 -0.40 0.09 16 34 H 0.12 1.32 7.03 -52.49 -0.37 0.95 16 35 H 0.14 2.30 6.22 -52.48 -0.33 1.97 16 36 H 0.41 3.76 8.84 -40.82 -0.36 3.40 16 37 H 0.40 5.62 8.49 -40.82 -0.35 5.28 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.05 0.43 7.02 -51.93 -0.36 0.07 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -32.35 391.14 -10.76 -43.11 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.62 Total: 5.43 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -3.21 Total: -2.69 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.50 Total: -52.17 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.30 Total: -15.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.35 -10.76 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273123693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.601 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds