Wall clock time and date at job start Tue Mar 31 2020 18:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47082 * 119.99591 * 2 1 3 5 5 C 1.38233 * 119.99889 * 62.86334 * 4 2 1 6 6 C 1.38235 * 119.99844 * 179.79257 * 5 4 2 7 7 C 1.38234 * 120.00137 * 0.43458 * 6 5 4 8 8 C 1.38234 * 119.99898 * 359.81952 * 7 6 5 9 9 C 1.38232 * 120.00250 * 243.13998 * 4 2 1 10 10 C 1.53004 * 109.47341 * 239.99522 * 2 1 3 11 11 H 1.08998 * 109.47166 * 304.66303 * 10 2 1 12 12 N 1.46504 * 109.46665 * 184.66483 * 10 2 1 13 13 C 1.34778 * 119.99383 * 155.00326 * 12 10 2 14 14 O 1.21588 * 120.00110 * 359.97438 * 13 12 10 15 15 N 1.34773 * 119.99998 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00158 * 179.72210 * 15 13 12 17 17 C 1.53009 * 109.47166 * 179.97438 * 16 15 13 18 18 C 1.52991 * 109.46841 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46850 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00017 * 0.02562 * 19 18 17 21 21 C 1.37885 * 120.00088 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99730 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00004 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46937 * 89.99747 * 23 21 19 25 25 H 1.48495 * 109.47023 * 210.00255 * 23 21 19 26 26 H 1.48505 * 109.47051 * 330.00212 * 23 21 19 27 27 C 1.50697 * 109.46829 * 64.66727 * 10 2 1 28 28 N 1.34773 * 120.00095 * 274.51132 * 27 10 2 29 29 O 1.21280 * 119.99793 * 94.51758 * 27 10 2 30 30 H 1.08998 * 109.47802 * 306.04239 * 1 2 3 31 31 H 1.08999 * 109.46964 * 66.04747 * 1 2 3 32 32 H 1.09004 * 109.47018 * 186.04014 * 1 2 3 33 33 H 1.08000 * 120.00224 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.00009 * 180.27587 * 6 5 4 35 35 H 1.07999 * 120.00432 * 179.83484 * 7 6 5 36 36 H 1.08004 * 120.00249 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.00074 * 359.97438 * 9 4 2 38 38 H 0.96993 * 120.00405 * 335.00489 * 12 10 2 39 39 H 0.97000 * 120.00172 * 359.97438 * 15 13 12 40 40 H 1.08997 * 109.47113 * 299.99419 * 16 15 13 41 41 H 1.09002 * 109.46823 * 60.00159 * 16 15 13 42 42 H 1.09002 * 109.46748 * 300.00354 * 17 16 15 43 43 H 1.09006 * 109.46670 * 60.00028 * 17 16 15 44 44 H 1.09002 * 109.47618 * 299.99674 * 18 17 16 45 45 H 1.08997 * 109.47726 * 60.00212 * 18 17 16 46 46 H 0.97006 * 119.99730 * 179.97438 * 22 21 19 47 47 H 0.96998 * 119.99560 * 5.38457 * 28 27 10 48 48 H 0.97005 * 119.99843 * 185.37739 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7479 -2.0498 1.4199 6 6 2.2123 -2.7024 2.5465 7 6 2.9535 -2.0134 3.4882 8 6 3.2335 -0.6726 3.3014 9 6 2.7726 -0.0211 2.1727 10 6 2.0400 -0.7214 -1.2492 11 1 1.6101 -1.7221 -1.2919 12 7 3.5008 -0.8193 -1.1942 13 6 4.1359 -1.8008 -1.8648 14 8 3.4967 -2.6051 -2.5150 15 7 5.4797 -1.8914 -1.8139 16 6 6.1697 -2.9618 -2.5378 17 6 7.6785 -2.8374 -2.3158 18 6 8.3991 -3.9550 -3.0724 19 6 9.8850 -3.8328 -2.8533 20 1 10.2762 -3.0379 -2.2358 21 6 10.7451 -4.7367 -3.4403 22 7 12.0418 -4.6303 -3.2486 23 14 10.0683 -6.1130 -4.5067 24 1 9.9868 -5.6526 -5.9162 25 1 10.9670 -7.2921 -4.4222 26 1 8.7131 -6.4882 -4.0294 27 6 1.6343 0.0526 -2.4769 28 7 0.4202 -0.1452 -3.0275 29 8 2.4004 0.8533 -2.9696 30 1 -0.3634 0.6046 0.8309 31 1 -0.3633 0.4172 -0.9392 32 1 -0.3633 -1.0220 0.1081 33 1 1.1653 -2.5871 0.6862 34 1 1.9938 -3.7500 2.6923 35 1 3.3141 -2.5226 4.3697 36 1 3.8122 -0.1342 4.0373 37 1 2.9914 1.0264 2.0268 38 1 4.0107 -0.1779 -0.6752 39 1 5.9897 -1.2499 -1.2949 40 1 5.8266 -3.9289 -2.1702 41 1 5.9515 -2.8796 -3.6026 42 1 8.0213 -1.8703 -2.6837 43 1 7.8970 -2.9194 -1.2511 44 1 8.0563 -4.9223 -2.7049 45 1 8.1805 -3.8727 -4.1371 46 1 12.6469 -5.2664 -3.6613 47 1 -0.2217 -0.7264 -2.5904 48 1 0.1882 0.2938 -3.8609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292182016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:51 Heat of formation + Delta-G solvation = -59.676486 kcal Electronic energy + Delta-G solvation = -28465.778494 eV Core-core repulsion = 24519.881567 eV Total energy + Delta-G solvation = -3945.896928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95551 -39.46309 -39.11041 -36.22963 -35.36264 -34.06588 -33.41697 -33.04495 -31.32680 -31.20304 -29.93219 -27.84429 -26.39636 -24.18733 -22.91897 -22.86106 -21.48557 -20.79646 -20.36062 -20.19953 -18.35128 -17.80079 -17.35754 -17.05116 -16.74288 -16.11544 -15.69413 -15.40348 -15.27917 -14.84659 -14.50288 -14.39897 -14.15716 -13.95610 -13.85929 -13.69950 -13.61239 -13.23860 -12.97460 -12.66843 -12.48939 -12.26655 -11.98949 -11.86916 -11.72195 -11.29472 -11.09808 -11.02539 -10.86935 -10.47931 -10.28848 -9.97930 -9.92079 -9.79602 -9.65352 -9.24931 -9.19579 -9.19428 -9.01356 -8.65325 -8.52633 -6.03572 -4.01938 1.03268 1.12443 2.30280 2.66175 3.11915 3.33859 3.40969 3.45775 3.46243 3.52226 4.15396 4.19743 4.35714 4.47200 4.55263 4.69257 4.71039 4.77117 4.82111 4.85760 5.04581 5.14024 5.20020 5.30705 5.30778 5.48845 5.58936 5.62674 5.70312 5.74227 5.74782 6.08035 6.17672 6.22444 6.25684 6.27800 6.42204 6.50173 6.51761 6.70088 6.72931 6.86457 6.98591 7.03556 7.27478 7.40750 7.78845 7.99210 8.09819 8.53394 8.69544 9.00608 9.58851 11.09742 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.002598 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.004985 B =10775.863779 C =12169.679736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.053 4.053 3 H 0.091 0.909 4 C -0.075 4.075 5 C -0.107 4.107 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.158 3.842 11 H 0.111 0.889 12 N -0.724 5.724 13 C 0.707 3.293 14 O -0.596 6.596 15 N -0.737 5.737 16 C 0.134 3.866 17 C -0.113 4.113 18 C -0.011 4.011 19 C -0.521 4.521 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.904 5.904 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 C 0.509 3.491 28 N -0.854 5.854 29 O -0.531 6.531 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.401 0.599 39 H 0.396 0.604 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.019 0.981 45 H 0.014 0.986 46 H 0.263 0.737 47 H 0.401 0.599 48 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.148 10.572 12.755 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.073 4.073 3 H 0.110 0.890 4 C -0.075 4.075 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.135 4.135 9 C -0.134 4.134 10 C 0.048 3.952 11 H 0.129 0.871 12 N -0.379 5.379 13 C 0.407 3.593 14 O -0.475 6.475 15 N -0.391 5.391 16 C 0.011 3.989 17 C -0.151 4.151 18 C -0.049 4.049 19 C -0.559 4.559 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.543 5.543 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 C 0.292 3.708 28 N -0.419 5.419 29 O -0.406 6.406 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.235 0.765 39 H 0.229 0.771 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.073 0.927 47 H 0.230 0.770 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -28.885 10.183 11.906 32.860 hybrid contribution -0.030 -0.302 -0.302 0.428 sum -28.915 9.881 11.605 32.686 Atomic orbital electron populations 1.21995 0.92710 1.03232 1.03151 1.20339 0.96995 0.99625 0.90305 0.89043 1.19538 0.98612 0.94171 0.95211 1.20960 1.00001 0.93954 0.97559 1.21157 0.97944 0.99919 0.94300 1.21193 0.98548 0.94691 0.99369 1.21142 0.99787 0.94886 0.97684 1.21045 0.98183 0.99821 0.94300 1.20679 0.82176 1.00568 0.91824 0.87136 1.44614 1.05413 1.33097 1.54799 1.15912 0.82385 0.81252 0.79730 1.90896 1.65851 1.44076 1.46627 1.45255 1.04514 1.34457 1.54845 1.21516 0.92815 0.88701 0.95907 1.21707 0.90647 1.01338 1.01397 1.19496 0.96353 0.93776 0.95232 1.21108 0.89128 1.14352 1.31303 0.91007 1.25027 0.94720 0.97598 0.96150 1.69916 1.02180 1.37313 1.44875 0.86775 0.79399 0.81958 0.81175 1.20242 1.21402 1.18865 1.21179 0.81431 0.82276 0.85910 1.43980 1.16638 1.52604 1.28665 1.90751 1.51431 1.35013 1.63386 0.91098 0.91485 0.91481 0.86200 0.86040 0.86126 0.86014 0.86042 0.76488 0.77062 0.91986 0.92006 0.92117 0.92125 0.96306 0.96724 0.92730 0.77027 0.76824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 8.69 37.16 0.32 -0.35 16 2 C -0.05 -0.35 2.18 -91.77 -0.20 -0.55 16 3 H 0.09 0.60 7.88 -51.93 -0.41 0.19 16 4 C -0.08 -0.56 4.19 -104.62 -0.44 -1.00 16 5 C -0.11 -0.86 8.69 -39.58 -0.34 -1.21 16 6 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 7 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 8 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 9 C -0.12 -0.84 9.67 -39.59 -0.38 -1.22 16 10 C 0.16 1.51 1.67 -69.08 -0.12 1.39 16 11 H 0.11 1.08 6.84 -51.93 -0.36 0.72 16 12 N -0.72 -8.42 4.18 -59.81 -0.25 -8.67 16 13 C 0.71 11.04 8.52 -86.92 -0.74 10.30 16 14 O -0.60 -11.35 16.01 5.29 0.08 -11.26 16 15 N -0.74 -11.08 5.56 -65.22 -0.36 -11.44 16 16 C 0.13 2.36 5.67 -4.04 -0.02 2.34 16 17 C -0.11 -2.19 5.27 -26.73 -0.14 -2.33 16 18 C -0.01 -0.25 4.04 -27.89 -0.11 -0.37 16 19 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 20 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 21 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 22 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 23 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 27 C 0.51 5.62 6.71 -10.99 -0.07 5.54 16 28 N -0.85 -5.88 7.88 31.22 0.25 -5.63 16 29 O -0.53 -8.22 17.46 5.56 0.10 -8.12 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.25 5.75 -51.93 -0.30 -0.05 16 32 H 0.07 0.24 7.37 -51.93 -0.38 -0.14 16 33 H 0.12 0.86 7.13 -52.49 -0.37 0.49 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.12 0.69 7.95 -52.48 -0.42 0.27 16 38 H 0.40 3.93 8.53 -40.82 -0.35 3.58 16 39 H 0.40 4.94 8.49 -40.82 -0.35 4.60 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 45 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.40 1.55 7.78 -40.82 -0.32 1.23 16 48 H 0.40 2.45 8.93 -40.82 -0.36 2.09 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -37.85 396.43 -9.33 -47.18 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.35 Total: 6.72 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.87 Total: -4.81 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.41 Total: -53.08 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.18 Total: -19.38 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.85 -9.33 -47.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292182016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.497 kcal (2) G-P(sol) polarization free energy of solvation -37.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds