Wall clock time and date at job start Tue Mar 31 2020 18:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47082 * 119.99591 * 2 1 3 5 5 C 1.38233 * 119.99889 * 62.86334 * 4 2 1 6 6 C 1.38235 * 119.99844 * 179.79257 * 5 4 2 7 7 C 1.38234 * 120.00137 * 0.43458 * 6 5 4 8 8 C 1.38234 * 119.99898 * 359.81952 * 7 6 5 9 9 C 1.38232 * 120.00250 * 243.13998 * 4 2 1 10 10 C 1.53004 * 109.47341 * 239.99522 * 2 1 3 11 11 H 1.08998 * 109.47166 * 304.66303 * 10 2 1 12 12 N 1.46504 * 109.46665 * 184.66483 * 10 2 1 13 13 C 1.34778 * 119.99383 * 155.00326 * 12 10 2 14 14 O 1.21588 * 120.00110 * 359.97438 * 13 12 10 15 15 N 1.34773 * 119.99998 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00158 * 179.72210 * 15 13 12 17 17 C 1.53009 * 109.47166 * 179.97438 * 16 15 13 18 18 C 1.52991 * 109.46841 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.46850 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00017 * 0.02562 * 19 18 17 21 21 C 1.37885 * 120.00088 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99730 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00004 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46937 * 89.99747 * 23 21 19 25 25 H 1.48495 * 109.47023 * 210.00255 * 23 21 19 26 26 H 1.48505 * 109.47051 * 330.00212 * 23 21 19 27 27 C 1.50697 * 109.46829 * 64.66727 * 10 2 1 28 28 N 1.34773 * 120.00095 * 274.51132 * 27 10 2 29 29 O 1.21280 * 119.99793 * 94.51758 * 27 10 2 30 30 H 1.08998 * 109.47802 * 306.04239 * 1 2 3 31 31 H 1.08999 * 109.46964 * 66.04747 * 1 2 3 32 32 H 1.09004 * 109.47018 * 186.04014 * 1 2 3 33 33 H 1.08000 * 120.00224 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.00009 * 180.27587 * 6 5 4 35 35 H 1.07999 * 120.00432 * 179.83484 * 7 6 5 36 36 H 1.08004 * 120.00249 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.00074 * 359.97438 * 9 4 2 38 38 H 0.96993 * 120.00405 * 335.00489 * 12 10 2 39 39 H 0.97000 * 120.00172 * 359.97438 * 15 13 12 40 40 H 1.08997 * 109.47113 * 299.99419 * 16 15 13 41 41 H 1.09002 * 109.46823 * 60.00159 * 16 15 13 42 42 H 1.09002 * 109.46748 * 300.00354 * 17 16 15 43 43 H 1.09006 * 109.46670 * 60.00028 * 17 16 15 44 44 H 1.09002 * 109.47618 * 299.99674 * 18 17 16 45 45 H 1.08997 * 109.47726 * 60.00212 * 18 17 16 46 46 H 0.97006 * 119.99730 * 179.97438 * 22 21 19 47 47 H 0.96998 * 119.99560 * 5.38457 * 28 27 10 48 48 H 0.97005 * 119.99843 * 185.37739 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7479 -2.0498 1.4199 6 6 2.2123 -2.7024 2.5465 7 6 2.9535 -2.0134 3.4882 8 6 3.2335 -0.6726 3.3014 9 6 2.7726 -0.0211 2.1727 10 6 2.0400 -0.7214 -1.2492 11 1 1.6101 -1.7221 -1.2919 12 7 3.5008 -0.8193 -1.1942 13 6 4.1359 -1.8008 -1.8648 14 8 3.4967 -2.6051 -2.5150 15 7 5.4797 -1.8914 -1.8139 16 6 6.1697 -2.9618 -2.5378 17 6 7.6785 -2.8374 -2.3158 18 6 8.3991 -3.9550 -3.0724 19 6 9.8850 -3.8328 -2.8533 20 1 10.2762 -3.0379 -2.2358 21 6 10.7451 -4.7367 -3.4403 22 7 12.0418 -4.6303 -3.2486 23 14 10.0683 -6.1130 -4.5067 24 1 9.9868 -5.6526 -5.9162 25 1 10.9670 -7.2921 -4.4222 26 1 8.7131 -6.4882 -4.0294 27 6 1.6343 0.0526 -2.4769 28 7 0.4202 -0.1452 -3.0275 29 8 2.4004 0.8533 -2.9696 30 1 -0.3634 0.6046 0.8309 31 1 -0.3633 0.4172 -0.9392 32 1 -0.3633 -1.0220 0.1081 33 1 1.1653 -2.5871 0.6862 34 1 1.9938 -3.7500 2.6923 35 1 3.3141 -2.5226 4.3697 36 1 3.8122 -0.1342 4.0373 37 1 2.9914 1.0264 2.0268 38 1 4.0107 -0.1779 -0.6752 39 1 5.9897 -1.2499 -1.2949 40 1 5.8266 -3.9289 -2.1702 41 1 5.9515 -2.8796 -3.6026 42 1 8.0213 -1.8703 -2.6837 43 1 7.8970 -2.9194 -1.2511 44 1 8.0563 -4.9223 -2.7049 45 1 8.1805 -3.8727 -4.1371 46 1 12.6469 -5.2664 -3.6613 47 1 -0.2217 -0.7264 -2.5904 48 1 0.1882 0.2938 -3.8609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292182016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:50 Heat of formation + Delta-G solvation = -88.024441 kcal Electronic energy + Delta-G solvation = -28467.007754 eV Core-core repulsion = 24519.881567 eV Total energy + Delta-G solvation = -3947.126187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82899 -40.38228 -39.94583 -37.24531 -36.63680 -35.17453 -34.87373 -34.10972 -33.09220 -31.75687 -30.52102 -29.19762 -27.60735 -24.75232 -24.57784 -23.47693 -22.39668 -22.18451 -21.54014 -21.07952 -19.41914 -18.98443 -18.54384 -18.13790 -17.65751 -17.14121 -16.73721 -16.38486 -16.27778 -16.04193 -15.67550 -15.45811 -15.24430 -15.18589 -14.93249 -14.75820 -14.39822 -14.14739 -13.84383 -13.81722 -13.70037 -13.51565 -12.98559 -12.77342 -12.73905 -12.70104 -12.24236 -11.94230 -11.87142 -11.78427 -11.63357 -11.60119 -11.41432 -11.35123 -11.31336 -10.76134 -10.65759 -10.37311 -9.82551 -9.76232 -9.58252 -8.29313 -6.33184 0.46339 0.55775 1.37348 1.38326 1.40826 1.50757 1.69305 2.05229 2.36723 2.60974 2.92037 3.06428 3.24079 3.60401 3.66133 3.93241 4.07376 4.09082 4.16498 4.20231 4.21442 4.31678 4.33434 4.49368 4.50816 4.65573 4.72846 4.86460 4.89321 4.89641 5.03261 5.03709 5.16299 5.20934 5.25571 5.33099 5.40796 5.50929 5.55877 5.62666 5.64829 5.69667 5.70901 5.84499 5.92149 6.15971 6.27737 6.38229 6.74568 7.00513 7.27183 7.31539 7.50985 8.87221 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.002598 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.004985 B =10775.863779 C =12169.679736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.043 4.043 3 H 0.094 0.906 4 C -0.078 4.078 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.133 4.133 8 C -0.126 4.126 9 C -0.121 4.121 10 C 0.157 3.843 11 H 0.111 0.889 12 N -0.711 5.711 13 C 0.704 3.296 14 O -0.632 6.632 15 N -0.732 5.732 16 C 0.148 3.852 17 C -0.099 4.099 18 C -0.011 4.011 19 C -0.531 4.531 20 H 0.037 0.963 21 C 0.005 3.995 22 N -0.951 5.951 23 Si 0.948 3.052 24 H -0.268 1.268 25 H -0.283 1.283 26 H -0.247 1.247 27 C 0.505 3.495 28 N -0.833 5.833 29 O -0.582 6.582 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.410 0.590 39 H 0.409 0.591 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.019 0.981 46 H 0.266 0.734 47 H 0.417 0.583 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.542 10.535 12.952 35.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 H 0.113 0.887 4 C -0.078 4.078 5 C -0.136 4.136 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.144 4.144 9 C -0.139 4.139 10 C 0.047 3.953 11 H 0.129 0.871 12 N -0.366 5.366 13 C 0.403 3.597 14 O -0.513 6.513 15 N -0.387 5.387 16 C 0.024 3.976 17 C -0.137 4.137 18 C -0.049 4.049 19 C -0.569 4.569 20 H 0.055 0.945 21 C -0.192 4.192 22 N -0.591 5.591 23 Si 0.771 3.229 24 H -0.193 1.193 25 H -0.209 1.209 26 H -0.170 1.170 27 C 0.288 3.712 28 N -0.399 5.399 29 O -0.461 6.461 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.246 0.754 39 H 0.245 0.755 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.249 0.751 48 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -31.347 10.175 12.145 35.123 hybrid contribution 0.702 -0.219 -0.291 0.790 sum -30.645 9.956 11.854 34.333 Atomic orbital electron populations 1.22015 0.90794 1.04189 1.03901 1.20306 0.98446 0.99081 0.88375 0.88734 1.19618 0.98623 0.94042 0.95495 1.21121 1.00353 0.94410 0.97757 1.21368 0.98362 1.00514 0.94658 1.21427 0.98665 0.95155 0.99813 1.21400 0.99863 0.94933 0.98179 1.21289 0.97804 1.00669 0.94152 1.20892 0.80814 1.00782 0.92762 0.87100 1.44535 1.06467 1.32000 1.53611 1.16061 0.82264 0.81625 0.79714 1.90865 1.66549 1.45648 1.48263 1.45029 1.04663 1.34218 1.54794 1.21145 0.91485 0.89377 0.95598 1.21474 0.91542 0.99692 1.01003 1.19450 0.93677 0.95626 0.96113 1.21463 0.91838 1.13230 1.30365 0.94482 1.25987 0.94899 1.00553 0.97777 1.70060 1.03773 1.38795 1.46515 0.85693 0.79428 0.78456 0.79316 1.19339 1.20904 1.17013 1.21412 0.81940 0.81734 0.86069 1.43832 1.15691 1.51872 1.28478 1.90732 1.53132 1.37338 1.64888 0.90253 0.90793 0.90506 0.85676 0.85409 0.85135 0.84616 0.84502 0.75361 0.75545 0.92329 0.93011 0.92048 0.91623 0.95882 0.96312 0.92489 0.75065 0.76090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.69 71.98 0.63 -0.32 16 2 C -0.04 -0.48 2.18 -11.54 -0.03 -0.50 16 3 H 0.09 1.05 7.88 -2.39 -0.02 1.03 16 4 C -0.08 -1.02 4.19 -19.87 -0.08 -1.11 16 5 C -0.12 -1.76 8.69 22.27 0.19 -1.56 16 6 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 7 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 8 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 9 C -0.12 -1.54 9.67 22.27 0.22 -1.33 16 10 C 0.16 2.77 1.67 44.24 0.07 2.84 16 11 H 0.11 1.99 6.84 -2.39 -0.02 1.97 16 12 N -0.71 -15.67 4.18 -461.40 -1.93 -17.59 16 13 C 0.70 21.25 8.52 179.06 1.53 22.77 16 14 O -0.63 -23.55 16.01 -3.99 -0.06 -23.61 16 15 N -0.73 -21.14 5.56 -478.52 -2.66 -23.81 16 16 C 0.15 5.05 5.67 86.38 0.49 5.54 16 17 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 18 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 19 C -0.53 -30.73 9.66 25.60 0.25 -30.48 16 20 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 21 C 0.00 0.27 5.47 84.66 0.46 0.74 16 22 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 23 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 27 C 0.51 10.48 6.71 87.66 0.59 11.07 16 28 N -0.83 -9.93 7.88 -173.54 -1.37 -11.30 16 29 O -0.58 -17.66 17.46 -3.03 -0.05 -17.71 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.36 5.75 -2.39 -0.01 0.34 16 32 H 0.08 0.35 7.37 -2.38 -0.02 0.33 16 33 H 0.13 1.63 7.13 -2.91 -0.02 1.61 16 34 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.14 1.25 7.95 -2.91 -0.02 1.23 16 38 H 0.41 7.45 8.53 -92.71 -0.79 6.66 16 39 H 0.41 9.62 8.49 -92.71 -0.79 8.83 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 45 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 46 H 0.27 15.71 8.31 -92.70 -0.77 14.93 16 47 H 0.42 2.21 7.78 -92.71 -0.72 1.49 16 48 H 0.41 4.27 8.93 -92.70 -0.83 3.44 16 Total: -1.00 -82.28 396.43 -0.79 -83.07 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -2.17 Total: 25.19 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.27 Total: -1.32 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -5.65 Total: -112.54 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.12 Total: -41.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -82.28 -0.79 -83.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292182016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.955 kcal (2) G-P(sol) polarization free energy of solvation -82.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds