Wall clock time and date at job start Tue Mar 31 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.50474 * 2 1 4 4 C 1.53088 * 109.54333 * 239.88891 * 2 1 3 5 5 N 1.47015 * 109.25728 * 183.19516 * 4 2 1 6 6 C 1.39222 * 111.00267 * 182.39238 * 5 4 2 7 7 C 1.39108 * 119.62853 * 56.36064 * 6 5 4 8 8 C 1.38255 * 119.16804 * 180.02562 * 7 6 5 9 9 C 1.39409 * 118.44936 * 0.02562 * 8 7 6 10 10 N 1.40186 * 120.40560 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00094 * 325.02016 * 10 9 8 12 12 O 1.21300 * 119.99565 * 4.67310 * 11 10 9 13 13 C 1.50693 * 120.00078 * 184.68015 * 11 10 9 14 14 C 1.53005 * 109.47114 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47065 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00113 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99931 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99702 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99935 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46906 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46752 * 120.00452 * 19 17 15 22 22 H 1.48502 * 109.47130 * 240.00480 * 19 17 15 23 23 C 1.38615 * 119.19114 * 359.97438 * 9 8 7 24 24 N 1.31974 * 120.76031 * 0.27583 * 23 9 8 25 25 C 1.47018 * 110.75346 * 58.61557 * 5 4 2 26 26 C 1.53099 * 109.25495 * 301.38396 * 25 5 4 27 27 H 1.08994 * 109.50820 * 296.91014 * 26 25 5 28 28 C 1.53007 * 109.50209 * 176.78027 * 26 25 5 29 29 O 1.43013 * 109.50387 * 120.08001 * 2 1 3 30 30 H 1.08998 * 109.47387 * 299.91481 * 1 2 3 31 31 H 1.09004 * 109.46630 * 59.91776 * 1 2 3 32 32 H 1.08997 * 109.47137 * 179.91478 * 1 2 3 33 33 H 1.09002 * 109.51010 * 63.26227 * 4 2 1 34 34 H 1.08998 * 109.50878 * 303.13022 * 4 2 1 35 35 H 1.08004 * 120.41687 * 0.05357 * 7 6 5 36 36 H 1.08006 * 120.77709 * 180.02562 * 8 7 6 37 37 H 0.97006 * 119.99922 * 145.01865 * 10 9 8 38 38 H 1.09003 * 109.46933 * 299.99240 * 13 11 10 39 39 H 1.08998 * 109.47608 * 59.99869 * 13 11 10 40 40 H 1.09003 * 109.46781 * 299.99555 * 14 13 11 41 41 H 1.08998 * 109.46808 * 59.99601 * 14 13 11 42 42 H 0.97004 * 119.99645 * 179.97438 * 18 17 15 43 43 H 1.08001 * 119.62508 * 180.02562 * 23 9 8 44 44 H 1.09007 * 109.50358 * 61.32088 * 25 5 4 45 45 H 1.09003 * 109.50503 * 181.44874 * 25 5 4 46 46 H 1.09000 * 109.46477 * 60.00552 * 28 26 25 47 47 H 1.09002 * 109.46538 * 180.02562 * 28 26 25 48 48 H 1.08998 * 109.47185 * 300.00272 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0421 -0.7238 -1.2480 5 7 3.5102 -0.7874 -1.2035 6 6 4.0185 -1.3923 -2.3498 7 6 3.6995 -0.8732 -3.6004 8 6 4.2090 -1.4818 -4.7324 9 6 5.0273 -2.5993 -4.5744 10 7 5.5665 -3.2479 -5.6942 11 6 4.8532 -3.3280 -6.8349 12 8 3.7813 -2.7667 -6.9205 13 6 5.3872 -4.1150 -8.0038 14 6 4.3909 -4.0460 -9.1630 15 6 4.9252 -4.8325 -10.3321 16 1 5.8796 -5.3320 -10.2559 17 6 4.1950 -4.9152 -11.4988 18 7 3.0325 -4.3073 -11.5914 19 14 4.8570 -5.8908 -12.9477 20 1 6.1747 -6.4749 -12.5905 21 1 3.9075 -6.9816 -13.2852 22 1 5.0147 -4.9918 -14.1191 23 6 5.3022 -3.0607 -3.2966 24 7 4.7949 -2.4582 -2.2377 25 6 3.9649 -1.4868 0.0071 26 6 3.4334 -0.7553 1.2425 27 1 3.8527 0.2501 1.2786 28 6 3.8357 -1.5232 2.5033 29 8 2.0075 -0.6757 1.1665 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 1.7283 -0.1797 -2.1389 34 1 1.6347 -1.7344 -1.2756 35 1 3.0622 -0.0055 -3.6859 36 1 3.9785 -1.1003 -5.7162 37 1 6.4530 -3.6390 -5.6480 38 1 6.3419 -3.6942 -8.3193 39 1 5.5282 -5.1546 -7.7079 40 1 3.4363 -4.4670 -8.8471 41 1 4.2494 -3.0065 -9.4589 42 1 2.5189 -4.3652 -12.4123 43 1 5.9357 -3.9257 -3.1661 44 1 3.5882 -2.5097 -0.0005 45 1 5.0545 -1.4997 0.0324 46 1 4.9225 -1.5868 2.5586 47 1 3.4567 -1.0022 3.3825 48 1 3.4143 -2.5278 2.4669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292788213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:10 Heat of formation + Delta-G solvation = -64.268945 kcal Electronic energy + Delta-G solvation = -27957.061607 eV Core-core repulsion = 24010.965535 eV Total energy + Delta-G solvation = -3946.096072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15709 -41.12998 -39.98218 -37.20372 -35.64113 -35.48557 -34.81352 -33.44010 -32.90881 -31.52326 -30.07662 -27.98369 -27.76960 -26.23278 -24.65514 -24.09039 -22.88307 -22.70949 -21.56874 -21.19414 -19.09424 -18.69241 -18.28214 -17.97371 -17.52238 -17.21948 -16.69885 -16.56128 -16.46982 -16.32454 -15.64378 -15.39268 -15.25541 -14.99191 -14.64710 -14.43361 -14.25163 -14.06119 -13.88997 -13.65917 -13.51622 -13.25316 -13.06536 -12.87368 -12.86607 -12.85858 -12.49794 -12.45234 -12.07370 -11.97711 -11.93814 -11.65950 -11.58297 -11.30528 -11.12752 -11.00327 -10.67075 -10.57898 -10.43939 -10.25722 -8.86040 -8.19049 -6.32474 -0.05939 0.18649 1.42653 1.43351 1.56526 1.57033 1.95525 2.32032 2.43379 2.64410 2.74841 3.14710 3.32836 3.66111 3.75840 3.82616 3.85460 3.92411 4.01104 4.03694 4.09102 4.17205 4.33990 4.39401 4.44275 4.52099 4.53661 4.58272 4.59241 4.66967 4.73790 4.82737 4.93984 4.97802 4.98734 5.04483 5.08697 5.18255 5.21492 5.30040 5.48873 5.51007 5.55375 5.62131 5.84660 5.99980 6.16423 6.19898 6.40988 6.83308 6.86415 7.16736 7.37926 8.93624 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.001897 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.153374 B =14753.979884 C =15470.685540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.077 0.923 4 C 0.026 3.974 5 N -0.476 5.476 6 C 0.279 3.721 7 C -0.163 4.163 8 C -0.074 4.074 9 C 0.068 3.932 10 N -0.655 5.655 11 C 0.513 3.487 12 O -0.565 6.565 13 C -0.116 4.116 14 C 0.040 3.960 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.252 1.252 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.108 3.892 24 N -0.509 5.509 25 C 0.043 3.957 26 C 0.086 3.914 27 H 0.072 0.928 28 C -0.139 4.139 29 O -0.394 6.394 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.152 0.848 36 H 0.131 0.869 37 H 0.432 0.568 38 H 0.112 0.888 39 H 0.111 0.889 40 H -0.017 1.017 41 H -0.015 1.015 42 H 0.262 0.738 43 H 0.191 0.809 44 H 0.043 0.957 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 7.423 28.168 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.100 4.100 5 N -0.194 5.194 6 C 0.047 3.953 7 C -0.186 4.186 8 C -0.102 4.102 9 C -0.030 4.030 10 N -0.303 5.303 11 C 0.304 3.696 12 O -0.442 6.442 13 C -0.156 4.156 14 C 0.003 3.997 15 C -0.579 4.579 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.175 1.175 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.052 4.052 24 N -0.223 5.223 25 C -0.085 4.085 26 C 0.029 3.971 27 H 0.090 0.910 28 C -0.196 4.196 29 O -0.314 6.314 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.169 0.831 36 H 0.149 0.851 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.001 0.999 41 H 0.004 0.996 42 H 0.071 0.929 43 H 0.208 0.792 44 H 0.061 0.939 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.719 7.911 28.988 30.278 hybrid contribution -0.094 -0.760 -2.279 2.404 sum 3.625 7.151 26.709 27.887 Atomic orbital electron populations 1.21766 0.91018 1.03110 1.04032 1.22259 0.96148 0.95484 0.82747 0.90512 1.23108 0.84168 1.01029 1.01697 1.59566 1.10284 1.48659 1.00900 1.19907 0.94873 0.89957 0.90541 1.21576 1.03871 1.02765 0.90404 1.21658 0.95693 0.93082 0.99809 1.18905 1.00840 0.94433 0.88794 1.43411 1.20753 1.56526 1.09583 1.21635 0.83945 0.79816 0.84242 1.90664 1.24205 1.46797 1.82558 1.21665 1.01376 1.00919 0.91610 1.18714 0.93464 0.95221 0.92331 1.21749 1.05801 1.31860 0.98473 0.90399 1.26124 0.95073 0.96904 1.02423 1.70179 1.14411 1.45009 1.28146 0.85291 0.78951 0.77969 0.78145 1.17515 1.20835 1.20752 1.22755 0.98680 0.98820 0.84991 1.67580 1.12978 1.08127 1.33566 1.22683 1.02001 0.95852 0.87925 1.22349 0.80637 0.99477 0.94681 0.91036 1.21732 1.02555 1.00127 0.95196 1.87998 1.21691 1.78658 1.43015 0.90610 0.89146 0.92453 0.87774 0.94223 0.83053 0.85074 0.72812 0.86963 0.87094 0.99878 0.99641 0.92914 0.79228 0.93886 0.88697 0.89206 0.90826 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 71.98 0.69 -1.06 16 2 C 0.09 1.46 3.42 30.62 0.10 1.56 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C 0.03 0.49 4.68 86.31 0.40 0.90 16 5 N -0.48 -10.11 4.76 -700.74 -3.33 -13.44 16 6 C 0.28 6.91 6.41 133.00 0.85 7.76 16 7 C -0.16 -4.16 9.22 22.48 0.21 -3.95 16 8 C -0.07 -2.20 8.80 22.56 0.20 -2.00 16 9 C 0.07 1.80 6.32 38.18 0.24 2.04 16 10 N -0.65 -16.49 5.36 -303.08 -1.62 -18.11 16 11 C 0.51 18.35 7.69 87.66 0.67 19.03 16 12 O -0.56 -25.74 13.46 -3.09 -0.04 -25.78 16 13 C -0.12 -4.27 5.64 29.85 0.17 -4.11 16 14 C 0.04 2.15 4.26 29.85 0.13 2.28 16 15 C -0.54 -29.83 9.11 25.60 0.23 -29.59 16 16 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 17 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 18 N -0.94 -58.55 13.29 21.45 0.28 -58.26 16 19 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 20 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 C 0.11 2.41 11.11 84.76 0.94 3.35 16 24 N -0.51 -12.54 8.70 -192.68 -1.68 -14.22 16 25 C 0.04 0.82 4.10 86.31 0.35 1.18 16 26 C 0.09 1.39 3.43 30.63 0.10 1.50 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 C -0.14 -1.66 9.57 71.98 0.69 -0.98 16 29 O -0.39 -7.45 10.11 -148.98 -1.51 -8.96 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.71 6.82 -2.39 -0.02 1.70 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.15 3.24 7.19 -2.91 -0.02 3.22 16 36 H 0.13 4.51 6.32 -2.91 -0.02 4.50 16 37 H 0.43 7.00 8.83 -92.70 -0.82 6.18 16 38 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 40 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 41 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 42 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 43 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.04 0.97 8.02 -2.38 -0.02 0.95 16 45 H 0.09 1.81 7.87 -2.39 -0.02 1.79 16 46 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -76.82 390.24 0.72 -76.10 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.14 Total: 19.19 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 6.45 Total: -2.08 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -6.35 Total: -104.03 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.55 Total: -34.74 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -76.82 0.72 -76.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.828 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds