Wall clock time and date at job start Tue Mar 31 2020 18:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50681 * 2 1 4 4 C 1.53090 * 109.50795 * 239.91660 * 2 1 3 5 5 N 1.47014 * 109.25788 * 296.91565 * 4 2 1 6 6 C 1.39208 * 111.00392 * 177.60937 * 5 4 2 7 7 C 1.39115 * 119.63252 * 179.97438 * 6 5 4 8 8 C 1.38262 * 119.16939 * 179.97438 * 7 6 5 9 9 C 1.39411 * 118.44585 * 0.02562 * 8 7 6 10 10 N 1.40185 * 120.40326 * 179.97438 * 9 8 7 11 11 C 1.34783 * 119.99711 * 32.66624 * 10 9 8 12 12 O 1.21288 * 120.00157 * 5.27249 * 11 10 9 13 13 C 1.50702 * 119.99527 * 185.26355 * 11 10 9 14 14 C 1.53007 * 109.46641 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46967 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99562 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99927 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99996 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00160 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47025 * 90.00236 * 19 17 15 21 21 H 1.48499 * 109.47316 * 210.00513 * 19 17 15 22 22 H 1.48502 * 109.47038 * 330.00362 * 19 17 15 23 23 C 1.38621 * 119.19242 * 359.97438 * 9 8 7 24 24 N 1.31966 * 120.75986 * 359.74593 * 23 9 8 25 25 C 1.47018 * 110.75278 * 301.38436 * 5 4 2 26 26 C 1.53103 * 109.25719 * 58.61208 * 25 5 4 27 27 H 1.08995 * 109.50282 * 63.09166 * 26 25 5 28 28 C 1.52999 * 109.50568 * 183.17383 * 26 25 5 29 29 O 1.43016 * 109.50431 * 120.08572 * 2 1 3 30 30 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47038 * 59.99810 * 1 2 3 32 32 H 1.09005 * 109.47138 * 300.00236 * 1 2 3 33 33 H 1.08996 * 109.51326 * 56.84820 * 4 2 1 34 34 H 1.08995 * 109.51122 * 176.93803 * 4 2 1 35 35 H 1.07998 * 120.41681 * 359.95747 * 7 6 5 36 36 H 1.08002 * 120.77363 * 179.97438 * 8 7 6 37 37 H 0.97004 * 120.00276 * 212.66970 * 10 9 8 38 38 H 1.09000 * 109.47815 * 299.99948 * 13 11 10 39 39 H 1.08997 * 109.47452 * 60.00530 * 13 11 10 40 40 H 1.08998 * 109.47543 * 300.00302 * 14 13 11 41 41 H 1.09003 * 109.46998 * 60.00424 * 14 13 11 42 42 H 0.97000 * 120.00474 * 179.97438 * 18 17 15 43 43 H 1.08004 * 119.61840 * 180.02562 * 23 9 8 44 44 H 1.09002 * 109.50712 * 178.54788 * 25 5 4 45 45 H 1.09001 * 109.50320 * 298.67928 * 25 5 4 46 46 H 1.08999 * 109.47019 * 60.00540 * 28 26 25 47 47 H 1.09004 * 109.46987 * 180.02562 * 28 26 25 48 48 H 1.08997 * 109.47517 * 300.00458 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2486 5 7 1.6109 -2.1284 -1.2053 6 6 2.0114 -2.8085 -2.3521 7 6 1.6971 -4.1558 -2.4979 8 6 2.0991 -4.8217 -3.6409 9 6 2.8088 -4.1116 -4.6082 10 7 3.2368 -4.7463 -5.7826 11 6 2.4974 -5.7360 -6.3216 12 8 1.4164 -6.0131 -5.8465 13 6 3.0139 -6.4981 -7.5147 14 6 1.9893 -7.5575 -7.9256 15 6 2.5060 -8.3202 -9.1183 16 1 3.4687 -8.0735 -9.5412 17 6 1.7492 -9.3319 -9.6702 18 7 2.1999 -9.9971 -10.7114 19 14 0.0839 -9.7579 -8.9392 20 1 -0.9693 -8.9466 -9.6009 21 1 -0.1958 -11.2007 -9.1521 22 1 0.0928 -9.4651 -7.4834 23 6 3.0860 -2.7703 -4.3946 24 7 2.6822 -2.1646 -3.2940 25 6 2.1184 -2.7916 0.0047 26 6 1.6065 -2.0474 1.2408 27 1 0.5187 -2.1070 1.2769 28 6 2.1950 -2.6848 2.5010 29 8 2.0075 -0.6758 1.1665 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6332 -0.2451 -2.1391 34 1 3.1298 -0.6761 -1.2766 35 1 1.1462 -4.6752 -1.7277 36 1 1.8694 -5.8677 -3.7807 37 1 4.0651 -4.4733 -6.2073 38 1 3.1760 -5.8092 -8.3437 39 1 3.9550 -6.9834 -7.2562 40 1 1.8267 -8.2466 -7.0968 41 1 1.0483 -7.0719 -8.1842 42 1 1.6677 -10.7092 -11.0995 43 1 3.6350 -2.2135 -5.1397 44 1 1.7667 -3.8230 0.0291 45 1 3.2083 -2.7781 -0.0029 46 1 3.2827 -2.6235 2.4651 47 1 1.8298 -2.1548 3.3808 48 1 1.8916 -3.7303 2.5551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292788215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:13 Heat of formation + Delta-G solvation = -35.993189 kcal Electronic energy + Delta-G solvation = -28155.169500 eV Core-core repulsion = 24210.299557 eV Total energy + Delta-G solvation = -3944.869943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28223 -40.23126 -39.03692 -36.29086 -34.48070 -33.88964 -33.61936 -32.33311 -31.45459 -30.79772 -29.07654 -27.41355 -26.42135 -25.23554 -24.05852 -22.74863 -22.53540 -21.14110 -19.99655 -19.75966 -18.10681 -17.60209 -17.26925 -16.98219 -16.45438 -16.02519 -15.78164 -15.59012 -15.16839 -15.05852 -14.74763 -14.36008 -14.16190 -13.91670 -13.65487 -13.40655 -13.26264 -12.88590 -12.81727 -12.66523 -12.63252 -12.53658 -12.32038 -12.09891 -11.82844 -11.52460 -11.46465 -11.08758 -10.95416 -10.73888 -10.30091 -10.25662 -10.15840 -9.97931 -9.83380 -9.78888 -9.46372 -9.26962 -9.12372 -8.57137 -7.88420 -6.08956 -4.08572 0.90797 1.16553 2.80141 3.03915 3.18179 3.33156 3.33285 3.40208 3.49358 3.69689 4.14737 4.36755 4.44945 4.45653 4.60833 4.66224 4.74482 4.77616 4.82836 4.92830 4.96703 4.98633 5.14113 5.15959 5.26209 5.27135 5.33846 5.41257 5.48207 5.52941 5.55449 5.63380 5.68951 5.75847 5.86906 5.93256 5.93876 5.97178 6.13504 6.33954 6.53564 6.55730 6.80826 6.91391 7.25290 7.32070 7.42719 7.70493 7.78120 8.30673 8.45746 8.93234 9.53459 11.03674 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.002000 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.267004 B =13993.639424 C =14363.712777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.109 0.891 4 C 0.038 3.962 5 N -0.471 5.471 6 C 0.281 3.719 7 C -0.160 4.160 8 C -0.059 4.059 9 C 0.088 3.912 10 N -0.679 5.679 11 C 0.510 3.490 12 O -0.520 6.520 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.527 4.527 16 H 0.073 0.927 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.262 1.262 23 C 0.094 3.906 24 N -0.499 5.499 25 C 0.027 3.973 26 C 0.086 3.914 27 H 0.073 0.927 28 C -0.145 4.145 29 O -0.376 6.376 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.412 0.588 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.264 0.736 43 H 0.158 0.842 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 19.692 24.648 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.127 0.873 4 C -0.089 4.089 5 N -0.189 5.189 6 C 0.050 3.950 7 C -0.183 4.183 8 C -0.087 4.087 9 C -0.010 4.010 10 N -0.325 5.325 11 C 0.300 3.700 12 O -0.394 6.394 13 C -0.160 4.160 14 C -0.037 4.037 15 C -0.565 4.565 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.066 4.066 24 N -0.212 5.212 25 C -0.099 4.099 26 C 0.028 3.972 27 H 0.091 0.909 28 C -0.203 4.203 29 O -0.295 6.295 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.175 0.825 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.992 20.259 25.136 32.299 hybrid contribution -0.097 -1.116 -0.570 1.257 sum 0.896 19.142 24.565 31.156 Atomic orbital electron populations 1.22311 0.95478 1.03436 1.02267 1.22379 0.94475 0.96199 0.84115 0.87344 1.22647 0.99911 0.87026 0.99353 1.59458 1.55619 1.03454 1.00408 1.19678 0.93250 0.90267 0.91852 1.21440 1.03487 0.93810 0.99534 1.21566 0.95315 1.01392 0.90462 1.18783 1.01099 0.92777 0.88386 1.43844 1.26563 1.37472 1.24665 1.21869 0.84189 0.78574 0.85337 1.90670 1.20937 1.65293 1.62474 1.21720 1.02314 0.98828 0.93186 1.19391 0.93913 0.93196 0.97166 1.21072 1.06050 1.16956 1.12442 0.90850 1.24972 0.98041 0.95673 0.94525 1.69903 1.38386 1.22996 1.22705 0.86795 0.84509 0.77410 0.80822 1.20213 1.21380 1.18585 1.22267 0.99506 0.89713 0.95109 1.67477 1.11921 1.38850 1.02979 1.23016 0.99064 0.99258 0.88590 1.22186 0.99288 0.81850 0.93849 0.90921 1.21753 1.01939 1.00427 0.96142 1.88074 1.75590 1.22913 1.42974 0.91150 0.91510 0.92212 0.88608 0.92415 0.84522 0.83263 0.75179 0.89135 0.89013 0.95752 0.96171 0.92635 0.82462 0.88857 0.92809 0.91746 0.91304 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.89 37.16 0.33 -0.98 16 2 C 0.09 0.69 3.92 -26.69 -0.10 0.58 16 3 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.04 0.36 4.24 -3.72 -0.02 0.34 16 5 N -0.47 -4.77 4.12 -172.84 -0.71 -5.48 16 6 C 0.28 3.36 6.41 -154.87 -0.99 2.37 16 7 C -0.16 -1.91 9.22 -39.25 -0.36 -2.27 16 8 C -0.06 -0.81 8.76 -39.14 -0.34 -1.15 16 9 C 0.09 1.13 6.31 -83.46 -0.53 0.60 16 10 N -0.68 -8.48 5.36 -9.73 -0.05 -8.53 16 11 C 0.51 8.55 7.60 -10.98 -0.08 8.46 16 12 O -0.52 -10.62 13.67 5.55 0.08 -10.55 16 13 C -0.12 -2.15 5.64 -27.88 -0.16 -2.31 16 14 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 15 C -0.53 -14.64 9.66 -34.44 -0.33 -14.97 16 16 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 19 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 23 C 0.09 1.08 11.11 -17.35 -0.19 0.89 16 24 N -0.50 -6.15 8.70 -12.25 -0.11 -6.26 16 25 C 0.03 0.23 4.68 -3.71 -0.02 0.21 16 26 C 0.09 0.65 3.02 -26.68 -0.08 0.57 16 27 H 0.07 0.54 6.49 -51.93 -0.34 0.20 16 28 C -0.15 -0.83 9.57 37.16 0.36 -0.48 16 29 O -0.38 -3.44 10.29 -35.23 -0.36 -3.80 16 30 H 0.07 0.59 6.12 -51.93 -0.32 0.27 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.95 7.85 -51.93 -0.41 0.54 16 34 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 35 H 0.14 1.36 7.18 -52.49 -0.38 0.98 16 36 H 0.15 2.25 6.47 -52.49 -0.34 1.91 16 37 H 0.41 3.65 8.82 -40.82 -0.36 3.29 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 41 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.09 0.67 6.82 -51.93 -0.35 0.32 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -34.04 382.27 -9.49 -43.53 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.49 Total: 0.82 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.71 Total: -6.26 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.10 Total: -46.95 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.29 Total: -14.35 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.04 -9.49 -43.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.537 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds