Wall clock time and date at job start Tue Mar 31 2020 18:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50681 * 2 1 4 4 C 1.53090 * 109.50795 * 239.91660 * 2 1 3 5 5 N 1.47014 * 109.25788 * 296.91565 * 4 2 1 6 6 C 1.39208 * 111.00392 * 177.60937 * 5 4 2 7 7 C 1.39115 * 119.63252 * 179.97438 * 6 5 4 8 8 C 1.38262 * 119.16939 * 179.97438 * 7 6 5 9 9 C 1.39411 * 118.44585 * 0.02562 * 8 7 6 10 10 N 1.40185 * 120.40326 * 179.97438 * 9 8 7 11 11 C 1.34783 * 119.99711 * 32.66624 * 10 9 8 12 12 O 1.21288 * 120.00157 * 5.27249 * 11 10 9 13 13 C 1.50702 * 119.99527 * 185.26355 * 11 10 9 14 14 C 1.53007 * 109.46641 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46967 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99562 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99927 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99996 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00160 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47025 * 90.00236 * 19 17 15 21 21 H 1.48499 * 109.47316 * 210.00513 * 19 17 15 22 22 H 1.48502 * 109.47038 * 330.00362 * 19 17 15 23 23 C 1.38621 * 119.19242 * 359.97438 * 9 8 7 24 24 N 1.31966 * 120.75986 * 359.74593 * 23 9 8 25 25 C 1.47018 * 110.75278 * 301.38436 * 5 4 2 26 26 C 1.53103 * 109.25719 * 58.61208 * 25 5 4 27 27 H 1.08995 * 109.50282 * 63.09166 * 26 25 5 28 28 C 1.52999 * 109.50568 * 183.17383 * 26 25 5 29 29 O 1.43016 * 109.50431 * 120.08572 * 2 1 3 30 30 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47038 * 59.99810 * 1 2 3 32 32 H 1.09005 * 109.47138 * 300.00236 * 1 2 3 33 33 H 1.08996 * 109.51326 * 56.84820 * 4 2 1 34 34 H 1.08995 * 109.51122 * 176.93803 * 4 2 1 35 35 H 1.07998 * 120.41681 * 359.95747 * 7 6 5 36 36 H 1.08002 * 120.77363 * 179.97438 * 8 7 6 37 37 H 0.97004 * 120.00276 * 212.66970 * 10 9 8 38 38 H 1.09000 * 109.47815 * 299.99948 * 13 11 10 39 39 H 1.08997 * 109.47452 * 60.00530 * 13 11 10 40 40 H 1.08998 * 109.47543 * 300.00302 * 14 13 11 41 41 H 1.09003 * 109.46998 * 60.00424 * 14 13 11 42 42 H 0.97000 * 120.00474 * 179.97438 * 18 17 15 43 43 H 1.08004 * 119.61840 * 180.02562 * 23 9 8 44 44 H 1.09002 * 109.50712 * 178.54788 * 25 5 4 45 45 H 1.09001 * 109.50320 * 298.67928 * 25 5 4 46 46 H 1.08999 * 109.47019 * 60.00540 * 28 26 25 47 47 H 1.09004 * 109.46987 * 180.02562 * 28 26 25 48 48 H 1.08997 * 109.47517 * 300.00458 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2486 5 7 1.6109 -2.1284 -1.2053 6 6 2.0114 -2.8085 -2.3521 7 6 1.6971 -4.1558 -2.4979 8 6 2.0991 -4.8217 -3.6409 9 6 2.8088 -4.1116 -4.6082 10 7 3.2368 -4.7463 -5.7826 11 6 2.4974 -5.7360 -6.3216 12 8 1.4164 -6.0131 -5.8465 13 6 3.0139 -6.4981 -7.5147 14 6 1.9893 -7.5575 -7.9256 15 6 2.5060 -8.3202 -9.1183 16 1 3.4687 -8.0735 -9.5412 17 6 1.7492 -9.3319 -9.6702 18 7 2.1999 -9.9971 -10.7114 19 14 0.0839 -9.7579 -8.9392 20 1 -0.9693 -8.9466 -9.6009 21 1 -0.1958 -11.2007 -9.1521 22 1 0.0928 -9.4651 -7.4834 23 6 3.0860 -2.7703 -4.3946 24 7 2.6822 -2.1646 -3.2940 25 6 2.1184 -2.7916 0.0047 26 6 1.6065 -2.0474 1.2408 27 1 0.5187 -2.1070 1.2769 28 6 2.1950 -2.6848 2.5010 29 8 2.0075 -0.6758 1.1665 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6332 -0.2451 -2.1391 34 1 3.1298 -0.6761 -1.2766 35 1 1.1462 -4.6752 -1.7277 36 1 1.8694 -5.8677 -3.7807 37 1 4.0651 -4.4733 -6.2073 38 1 3.1760 -5.8092 -8.3437 39 1 3.9550 -6.9834 -7.2562 40 1 1.8267 -8.2466 -7.0968 41 1 1.0483 -7.0719 -8.1842 42 1 1.6677 -10.7092 -11.0995 43 1 3.6350 -2.2135 -5.1397 44 1 1.7667 -3.8230 0.0291 45 1 3.2083 -2.7781 -0.0029 46 1 3.2827 -2.6235 2.4651 47 1 1.8298 -2.1548 3.3808 48 1 1.8916 -3.7303 2.5551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292788215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:12 Heat of formation + Delta-G solvation = -58.700565 kcal Electronic energy + Delta-G solvation = -28156.154166 eV Core-core repulsion = 24210.299557 eV Total energy + Delta-G solvation = -3945.854609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17996 -41.21039 -40.05212 -37.20226 -35.62572 -35.47855 -34.49926 -33.52450 -33.07624 -31.56621 -30.05808 -28.10109 -27.98168 -26.19151 -24.89794 -23.87374 -23.39403 -22.56282 -21.26354 -20.51043 -19.35443 -18.87070 -18.40506 -18.05720 -17.49419 -17.09030 -16.72048 -16.46365 -16.29297 -16.09594 -15.82854 -15.51059 -15.35019 -15.00283 -14.88483 -14.66426 -14.41822 -14.16449 -13.93253 -13.63766 -13.42248 -13.34863 -13.16534 -12.93244 -12.90094 -12.73349 -12.44188 -12.15982 -12.08696 -11.99999 -11.98594 -11.77875 -11.41398 -11.36725 -11.23880 -10.94186 -10.78778 -10.75465 -10.45453 -10.11011 -8.82128 -8.31690 -6.34634 -0.04701 0.19491 1.33006 1.35431 1.49094 1.55158 1.98297 2.31514 2.34184 2.72806 2.77373 3.04226 3.35699 3.68200 3.73926 3.80638 3.86264 3.92956 4.02049 4.06660 4.09139 4.19318 4.35094 4.36051 4.39725 4.47381 4.50071 4.59222 4.61988 4.71978 4.72610 4.81959 4.95829 4.96455 4.97880 5.00918 5.09497 5.17349 5.25142 5.33817 5.35233 5.43230 5.54579 5.56657 5.60702 6.02326 6.19680 6.22199 6.38679 6.72298 6.85991 7.12463 7.30776 8.83768 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.002000 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.267004 B =13993.639424 C =14363.712777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.124 0.876 4 C 0.042 3.958 5 N -0.473 5.473 6 C 0.280 3.720 7 C -0.163 4.163 8 C -0.073 4.073 9 C 0.069 3.931 10 N -0.655 5.655 11 C 0.517 3.483 12 O -0.562 6.562 13 C -0.114 4.114 14 C 0.004 3.996 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.943 5.943 19 Si 0.937 3.063 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.259 1.259 23 C 0.105 3.895 24 N -0.510 5.510 25 C 0.028 3.972 26 C 0.086 3.914 27 H 0.076 0.924 28 C -0.142 4.142 29 O -0.390 6.390 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.431 0.569 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.012 0.988 41 H 0.009 0.991 42 H 0.267 0.733 43 H 0.188 0.812 44 H 0.105 0.895 45 H 0.046 0.954 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 21.212 26.308 33.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 H 0.141 0.859 4 C -0.085 4.085 5 N -0.191 5.191 6 C 0.048 3.952 7 C -0.185 4.185 8 C -0.101 4.101 9 C -0.028 4.028 10 N -0.303 5.303 11 C 0.307 3.693 12 O -0.440 6.440 13 C -0.153 4.153 14 C -0.034 4.034 15 C -0.566 4.566 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.762 3.238 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.183 1.183 23 C -0.055 4.055 24 N -0.224 5.224 25 C -0.098 4.098 26 C 0.028 3.972 27 H 0.094 0.906 28 C -0.199 4.199 29 O -0.309 6.309 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.170 0.830 36 H 0.149 0.851 37 H 0.271 0.729 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.031 0.969 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.205 0.795 44 H 0.123 0.877 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.901 21.821 26.821 34.588 hybrid contribution 0.012 -1.504 -1.040 1.829 sum 0.913 20.317 25.780 32.836 Atomic orbital electron populations 1.22256 0.94928 1.02913 1.02837 1.22464 0.94858 0.96619 0.83139 0.85884 1.22620 0.99189 0.86731 0.99942 1.59482 1.55392 1.03850 1.00417 1.19936 0.92570 0.90354 0.92330 1.21559 1.03530 0.93947 0.99489 1.21545 0.96112 1.00875 0.91594 1.18871 1.02209 0.93459 0.88298 1.43430 1.26614 1.35979 1.24296 1.21477 0.83786 0.79149 0.84869 1.90664 1.22806 1.66847 1.63639 1.21521 1.01142 0.98048 0.94607 1.19245 0.95011 0.94171 0.95020 1.21425 1.05121 1.16851 1.13222 0.92948 1.25805 1.01695 0.95996 0.95033 1.70019 1.40030 1.24014 1.24294 0.85843 0.80392 0.77509 0.80042 1.19582 1.20561 1.18337 1.22686 0.98509 0.89152 0.95167 1.67578 1.12374 1.39050 1.03390 1.23095 0.98589 0.99969 0.88133 1.22304 0.99540 0.81249 0.94133 0.90644 1.21765 1.01578 1.01296 0.95292 1.88066 1.75909 1.23679 1.43278 0.92165 0.91132 0.91443 0.89183 0.93474 0.82951 0.85072 0.72903 0.87225 0.87201 0.96944 0.97237 0.92423 0.79505 0.87676 0.93590 0.92151 0.90935 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.89 71.98 0.64 -1.62 16 2 C 0.09 1.26 3.92 30.62 0.12 1.38 16 3 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.04 0.75 4.24 86.31 0.37 1.11 16 5 N -0.47 -8.98 4.12 -700.75 -2.89 -11.87 16 6 C 0.28 6.33 6.41 133.00 0.85 7.18 16 7 C -0.16 -3.72 9.22 22.49 0.21 -3.51 16 8 C -0.07 -1.95 8.76 22.56 0.20 -1.76 16 9 C 0.07 1.68 6.31 38.18 0.24 1.92 16 10 N -0.66 -15.11 5.36 -303.07 -1.62 -16.74 16 11 C 0.52 16.70 7.60 87.66 0.67 17.37 16 12 O -0.56 -22.83 13.67 -3.05 -0.04 -22.87 16 13 C -0.11 -3.89 5.64 29.85 0.17 -3.73 16 14 C 0.00 0.17 3.33 29.85 0.10 0.27 16 15 C -0.53 -29.50 9.66 25.60 0.25 -29.26 16 16 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 17 C 0.01 0.73 5.47 84.65 0.46 1.19 16 18 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 19 Si 0.94 45.87 27.47 68.60 1.88 47.75 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 23 C 0.10 2.19 11.11 84.76 0.94 3.13 16 24 N -0.51 -11.74 8.70 -192.68 -1.68 -13.42 16 25 C 0.03 0.43 4.68 86.31 0.40 0.84 16 26 C 0.09 1.16 3.02 30.63 0.09 1.26 16 27 H 0.08 0.99 6.49 -2.39 -0.02 0.98 16 28 C -0.14 -1.38 9.57 71.98 0.69 -0.69 16 29 O -0.39 -6.54 10.29 -148.98 -1.53 -8.08 16 30 H 0.06 0.92 6.12 -2.39 -0.01 0.90 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16 34 H 0.05 0.93 8.03 -2.39 -0.02 0.91 16 35 H 0.15 2.85 7.18 -2.91 -0.02 2.83 16 36 H 0.13 4.00 6.47 -2.91 -0.02 3.98 16 37 H 0.43 6.43 8.82 -92.71 -0.82 5.61 16 38 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.11 3.36 8.14 -2.39 -0.02 3.35 16 40 H 0.01 0.61 7.16 -2.39 -0.02 0.59 16 41 H 0.01 0.46 7.53 -2.39 -0.02 0.44 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 44 H 0.11 1.34 6.82 -2.39 -0.02 1.32 16 45 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -73.68 382.27 0.91 -72.77 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.10 Total: 15.26 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 6.39 Total: -4.92 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -5.89 Total: -99.92 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.58 Total: -30.95 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.75 kcal Total: -73.68 0.91 -72.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.073 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds