Wall clock time and date at job start Tue Mar 31 2020 18:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.50714 * 2 1 4 4 C 1.53094 * 109.50551 * 120.08893 * 2 1 3 5 5 N 1.47011 * 109.25919 * 63.12812 * 4 2 1 6 6 C 1.39209 * 111.00161 * 182.39340 * 5 4 2 7 7 C 1.39117 * 119.63355 * 179.72404 * 6 5 4 8 8 C 1.38253 * 119.16842 * 179.76833 * 7 6 5 9 9 C 1.39409 * 118.44875 * 0.49751 * 8 7 6 10 10 N 1.40191 * 120.40801 * 179.76549 * 9 8 7 11 11 C 1.34773 * 119.99739 * 325.02661 * 10 9 8 12 12 O 1.21299 * 120.00307 * 4.66678 * 11 10 9 13 13 C 1.50709 * 119.99996 * 184.67306 * 11 10 9 14 14 C 1.53000 * 109.47201 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46974 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99831 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99857 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99989 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46989 * 90.00349 * 19 17 15 21 21 H 1.48503 * 109.47019 * 209.99746 * 19 17 15 22 22 H 1.48501 * 109.47382 * 329.99979 * 19 17 15 23 23 C 1.38616 * 119.19464 * 359.74857 * 9 8 7 24 24 N 1.31971 * 120.75751 * 359.97438 * 23 9 8 25 25 C 1.47017 * 110.75341 * 58.61549 * 5 4 2 26 26 C 1.53090 * 109.25893 * 301.38339 * 25 5 4 27 27 H 1.09005 * 109.50726 * 296.91586 * 26 25 5 28 28 C 1.52993 * 109.50917 * 176.78249 * 26 25 5 29 29 O 1.43018 * 109.54090 * 239.89228 * 2 1 3 30 30 H 1.08998 * 109.47229 * 299.91679 * 1 2 3 31 31 H 1.09005 * 109.47023 * 59.91414 * 1 2 3 32 32 H 1.08998 * 109.47182 * 179.91204 * 1 2 3 33 33 H 1.08997 * 109.50559 * 303.19397 * 4 2 1 34 34 H 1.08999 * 109.50435 * 183.06640 * 4 2 1 35 35 H 1.08000 * 120.41451 * 0.02562 * 7 6 5 36 36 H 1.08004 * 120.77623 * 180.22572 * 8 7 6 37 37 H 0.96997 * 120.00025 * 145.01812 * 10 9 8 38 38 H 1.08999 * 109.46522 * 299.99577 * 13 11 10 39 39 H 1.08999 * 109.47031 * 59.99251 * 13 11 10 40 40 H 1.09003 * 109.46822 * 299.99719 * 14 13 11 41 41 H 1.08992 * 109.47158 * 59.99283 * 14 13 11 42 42 H 0.97001 * 119.99892 * 179.97438 * 18 17 15 43 43 H 1.07996 * 119.62633 * 179.97438 * 23 9 8 44 44 H 1.08999 * 109.50142 * 61.31823 * 25 5 4 45 45 H 1.08999 * 109.50349 * 181.44758 * 25 5 4 46 46 H 1.09004 * 109.47087 * 300.21522 * 28 26 25 47 47 H 1.09001 * 109.47416 * 60.21823 * 28 26 25 48 48 H 1.08997 * 109.47423 * 180.21716 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 1.6118 -2.1288 1.2047 6 6 2.0122 -2.8089 2.3514 7 6 1.6933 -4.1549 2.4996 8 6 2.0999 -4.8222 3.6401 9 6 2.8092 -4.1121 4.6076 10 7 3.2371 -4.7468 5.7821 11 6 2.4751 -5.7046 6.3465 12 8 1.4615 -6.0771 5.7941 13 6 2.8824 -6.3126 7.6639 14 6 1.8531 -7.3656 8.0795 15 6 2.2606 -7.9740 9.3966 16 1 3.1633 -7.6425 9.8883 17 6 1.4806 -8.9531 9.9744 18 7 1.8361 -9.4837 11.1241 19 14 -0.0817 -9.5250 9.1250 20 1 0.2338 -10.6591 8.2198 21 1 -1.0670 -9.9652 10.1452 22 1 -0.6539 -8.4053 8.3350 23 6 3.0866 -2.7709 4.3942 24 7 2.6878 -2.1665 3.2909 25 6 2.1202 -2.7913 -0.0053 26 6 1.6082 -2.0471 -1.2414 27 1 0.5204 -2.1073 -1.2778 28 6 2.1985 -2.6830 -2.5015 29 8 2.0084 -0.6761 -1.1660 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6325 -0.2457 2.1390 34 1 3.1298 -0.6762 1.2766 35 1 1.1386 -4.6731 1.7313 36 1 1.8696 -5.8680 3.7802 37 1 4.0816 -4.4968 6.1884 38 1 3.8609 -6.7815 7.5606 39 1 2.9315 -5.5331 8.4241 40 1 0.8747 -6.8963 8.1829 41 1 1.8036 -8.1451 7.3194 42 1 1.2871 -10.1723 11.5308 43 1 3.6352 -2.2140 5.1394 44 1 3.2101 -2.7770 0.0027 45 1 1.7692 -3.8229 -0.0301 46 1 3.2862 -2.6239 -2.4629 47 1 1.8932 -3.7278 -2.5584 48 1 1.8366 -2.1504 -3.3809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292788216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:16 Heat of formation + Delta-G solvation = -35.655039 kcal Electronic energy + Delta-G solvation = -28153.605798 eV Core-core repulsion = 24208.750518 eV Total energy + Delta-G solvation = -3944.855280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28064 -40.23079 -39.03470 -36.28801 -34.47505 -33.89243 -33.62013 -32.33034 -31.45003 -30.79652 -29.07494 -27.41284 -26.41450 -25.23781 -24.04110 -22.74812 -22.52545 -21.15126 -19.99775 -19.76921 -18.10139 -17.59042 -17.27073 -16.97673 -16.44627 -16.05938 -15.77558 -15.60754 -15.16954 -15.03876 -14.74323 -14.35983 -14.17056 -13.89664 -13.64327 -13.40390 -13.24984 -12.89573 -12.84233 -12.64154 -12.61879 -12.54805 -12.32121 -12.09881 -11.82958 -11.52212 -11.46542 -11.07661 -10.92038 -10.73293 -10.29699 -10.28709 -10.13445 -9.97301 -9.84781 -9.77808 -9.42316 -9.26349 -9.12869 -8.56923 -7.90598 -6.08780 -4.08337 0.90910 1.17660 2.79553 3.05606 3.17386 3.33029 3.33135 3.40279 3.49912 3.68998 4.14866 4.36852 4.45163 4.45680 4.60903 4.66270 4.74582 4.78743 4.84861 4.93415 4.97240 4.98579 5.14037 5.15870 5.26393 5.27446 5.34467 5.41313 5.48811 5.52835 5.55441 5.63468 5.68793 5.76073 5.87966 5.93220 5.94093 5.99244 6.14629 6.34380 6.54084 6.56268 6.81150 6.91758 7.25289 7.32789 7.43225 7.70802 7.78193 8.31198 8.45996 8.93446 9.53662 11.03856 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.001997 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.089593 B =14017.720613 C =14373.837958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.109 0.891 4 C 0.038 3.962 5 N -0.471 5.471 6 C 0.282 3.718 7 C -0.162 4.162 8 C -0.059 4.059 9 C 0.084 3.916 10 N -0.678 5.678 11 C 0.511 3.489 12 O -0.521 6.521 13 C -0.120 4.120 14 C 0.001 3.999 15 C -0.527 4.527 16 H 0.073 0.927 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.096 3.904 24 N -0.500 5.500 25 C 0.027 3.973 26 C 0.086 3.914 27 H 0.073 0.927 28 C -0.145 4.145 29 O -0.376 6.376 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.412 0.588 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.264 0.736 43 H 0.158 0.842 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 18.528 -25.571 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.127 0.873 4 C -0.089 4.089 5 N -0.189 5.189 6 C 0.051 3.949 7 C -0.185 4.185 8 C -0.087 4.087 9 C -0.014 4.014 10 N -0.325 5.325 11 C 0.301 3.699 12 O -0.395 6.395 13 C -0.160 4.160 14 C -0.037 4.037 15 C -0.565 4.565 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.064 4.064 24 N -0.214 5.214 25 C -0.099 4.099 26 C 0.028 3.972 27 H 0.091 0.909 28 C -0.203 4.203 29 O -0.296 6.296 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.175 0.825 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.829 19.066 -26.089 32.365 hybrid contribution -0.025 -1.212 0.481 1.304 sum 1.804 17.854 -25.608 31.270 Atomic orbital electron populations 1.22309 0.95471 1.03432 1.02276 1.22382 0.94472 0.96196 0.84110 0.87337 1.22650 0.99923 0.87018 0.99355 1.59466 1.55603 1.03462 1.00418 1.19695 0.93085 0.90305 0.91851 1.21464 1.03540 0.93806 0.99655 1.21706 0.95050 1.01635 0.90265 1.18795 1.01450 0.92741 0.88403 1.43801 1.24465 1.39714 1.24553 1.21872 0.82653 0.77646 0.87739 1.90653 1.25421 1.59575 1.63887 1.21717 1.02927 1.00570 0.90797 1.19387 0.94127 0.93251 0.96895 1.21073 1.10609 1.20855 1.03975 0.90853 1.24974 0.97742 0.95848 0.94656 1.69907 1.39064 1.27650 1.17371 0.86797 0.83559 0.79716 0.79479 1.20218 1.21377 1.18565 1.22295 0.99346 0.89782 0.94972 1.67492 1.12015 1.38864 1.02982 1.23013 0.99047 0.99266 0.88600 1.22173 0.99287 0.81856 0.93843 0.90925 1.21752 1.01924 1.00433 0.96147 1.88056 1.75543 1.22914 1.43046 0.91495 0.92214 0.91156 0.88611 0.92407 0.84549 0.82892 0.75185 0.89114 0.89046 0.95731 0.96188 0.92641 0.82454 0.92820 0.88867 0.91753 0.90739 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.89 37.16 0.33 -0.98 16 2 C 0.09 0.69 3.92 -26.68 -0.10 0.58 16 3 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.04 0.36 4.23 -3.72 -0.02 0.34 16 5 N -0.47 -4.78 4.12 -172.85 -0.71 -5.49 16 6 C 0.28 3.38 6.40 -154.86 -0.99 2.39 16 7 C -0.16 -1.93 9.22 -39.25 -0.36 -2.29 16 8 C -0.06 -0.80 8.80 -39.14 -0.34 -1.14 16 9 C 0.08 1.08 6.32 -83.46 -0.53 0.56 16 10 N -0.68 -8.47 5.36 -9.72 -0.05 -8.52 16 11 C 0.51 8.55 7.69 -10.98 -0.08 8.47 16 12 O -0.52 -10.60 13.46 5.54 0.07 -10.53 16 13 C -0.12 -2.15 5.64 -27.88 -0.16 -2.31 16 14 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 15 C -0.53 -14.65 9.66 -34.44 -0.33 -14.98 16 16 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 19 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 23 C 0.10 1.11 11.11 -17.35 -0.19 0.92 16 24 N -0.50 -6.17 8.70 -12.25 -0.11 -6.28 16 25 C 0.03 0.23 4.68 -3.71 -0.02 0.21 16 26 C 0.09 0.65 3.03 -26.69 -0.08 0.57 16 27 H 0.07 0.54 6.49 -51.93 -0.34 0.20 16 28 C -0.14 -0.83 9.57 37.15 0.36 -0.48 16 29 O -0.38 -3.44 10.28 -35.23 -0.36 -3.80 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.59 6.13 -51.93 -0.32 0.27 16 33 H 0.10 0.95 7.86 -51.93 -0.41 0.54 16 34 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 35 H 0.14 1.36 7.20 -52.49 -0.38 0.98 16 36 H 0.15 2.31 6.32 -52.48 -0.33 1.98 16 37 H 0.41 3.65 8.83 -40.82 -0.36 3.29 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.67 6.84 -51.93 -0.36 0.32 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -33.99 382.09 -9.49 -43.49 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.48 Total: 0.90 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.72 Total: -6.28 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.10 Total: -46.99 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.29 Total: -14.33 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.99 -9.49 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.832 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds