Wall clock time and date at job start Tue Mar 31 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.50714 * 2 1 4 4 C 1.53094 * 109.50551 * 120.08893 * 2 1 3 5 5 N 1.47011 * 109.25919 * 63.12812 * 4 2 1 6 6 C 1.39209 * 111.00161 * 182.39340 * 5 4 2 7 7 C 1.39117 * 119.63355 * 179.72404 * 6 5 4 8 8 C 1.38253 * 119.16842 * 179.76833 * 7 6 5 9 9 C 1.39409 * 118.44875 * 0.49751 * 8 7 6 10 10 N 1.40191 * 120.40801 * 179.76549 * 9 8 7 11 11 C 1.34773 * 119.99739 * 325.02661 * 10 9 8 12 12 O 1.21299 * 120.00307 * 4.66678 * 11 10 9 13 13 C 1.50709 * 119.99996 * 184.67306 * 11 10 9 14 14 C 1.53000 * 109.47201 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46974 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99979 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99831 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99857 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99989 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46989 * 90.00349 * 19 17 15 21 21 H 1.48503 * 109.47019 * 209.99746 * 19 17 15 22 22 H 1.48501 * 109.47382 * 329.99979 * 19 17 15 23 23 C 1.38616 * 119.19464 * 359.74857 * 9 8 7 24 24 N 1.31971 * 120.75751 * 359.97438 * 23 9 8 25 25 C 1.47017 * 110.75341 * 58.61549 * 5 4 2 26 26 C 1.53090 * 109.25893 * 301.38339 * 25 5 4 27 27 H 1.09005 * 109.50726 * 296.91586 * 26 25 5 28 28 C 1.52993 * 109.50917 * 176.78249 * 26 25 5 29 29 O 1.43018 * 109.54090 * 239.89228 * 2 1 3 30 30 H 1.08998 * 109.47229 * 299.91679 * 1 2 3 31 31 H 1.09005 * 109.47023 * 59.91414 * 1 2 3 32 32 H 1.08998 * 109.47182 * 179.91204 * 1 2 3 33 33 H 1.08997 * 109.50559 * 303.19397 * 4 2 1 34 34 H 1.08999 * 109.50435 * 183.06640 * 4 2 1 35 35 H 1.08000 * 120.41451 * 0.02562 * 7 6 5 36 36 H 1.08004 * 120.77623 * 180.22572 * 8 7 6 37 37 H 0.96997 * 120.00025 * 145.01812 * 10 9 8 38 38 H 1.08999 * 109.46522 * 299.99577 * 13 11 10 39 39 H 1.08999 * 109.47031 * 59.99251 * 13 11 10 40 40 H 1.09003 * 109.46822 * 299.99719 * 14 13 11 41 41 H 1.08992 * 109.47158 * 59.99283 * 14 13 11 42 42 H 0.97001 * 119.99892 * 179.97438 * 18 17 15 43 43 H 1.07996 * 119.62633 * 179.97438 * 23 9 8 44 44 H 1.08999 * 109.50142 * 61.31823 * 25 5 4 45 45 H 1.08999 * 109.50349 * 181.44758 * 25 5 4 46 46 H 1.09004 * 109.47087 * 300.21522 * 28 26 25 47 47 H 1.09001 * 109.47416 * 60.21823 * 28 26 25 48 48 H 1.08997 * 109.47423 * 180.21716 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 1.6118 -2.1288 1.2047 6 6 2.0122 -2.8089 2.3514 7 6 1.6933 -4.1549 2.4996 8 6 2.0999 -4.8222 3.6401 9 6 2.8092 -4.1121 4.6076 10 7 3.2371 -4.7468 5.7821 11 6 2.4751 -5.7046 6.3465 12 8 1.4615 -6.0771 5.7941 13 6 2.8824 -6.3126 7.6639 14 6 1.8531 -7.3656 8.0795 15 6 2.2606 -7.9740 9.3966 16 1 3.1633 -7.6425 9.8883 17 6 1.4806 -8.9531 9.9744 18 7 1.8361 -9.4837 11.1241 19 14 -0.0817 -9.5250 9.1250 20 1 0.2338 -10.6591 8.2198 21 1 -1.0670 -9.9652 10.1452 22 1 -0.6539 -8.4053 8.3350 23 6 3.0866 -2.7709 4.3942 24 7 2.6878 -2.1665 3.2909 25 6 2.1202 -2.7913 -0.0053 26 6 1.6082 -2.0471 -1.2414 27 1 0.5204 -2.1073 -1.2778 28 6 2.1985 -2.6830 -2.5015 29 8 2.0084 -0.6761 -1.1660 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6325 -0.2457 2.1390 34 1 3.1298 -0.6762 1.2766 35 1 1.1386 -4.6731 1.7313 36 1 1.8696 -5.8680 3.7802 37 1 4.0816 -4.4968 6.1884 38 1 3.8609 -6.7815 7.5606 39 1 2.9315 -5.5331 8.4241 40 1 0.8747 -6.8963 8.1829 41 1 1.8036 -8.1451 7.3194 42 1 1.2871 -10.1723 11.5308 43 1 3.6352 -2.2140 5.1394 44 1 3.2101 -2.7770 0.0027 45 1 1.7692 -3.8229 -0.0301 46 1 3.2862 -2.6239 -2.4629 47 1 1.8932 -3.7278 -2.5584 48 1 1.8366 -2.1504 -3.3809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292788216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:15 Heat of formation + Delta-G solvation = -58.305473 kcal Electronic energy + Delta-G solvation = -28154.587994 eV Core-core repulsion = 24208.750518 eV Total energy + Delta-G solvation = -3945.837476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17748 -41.20934 -40.05051 -37.19879 -35.62501 -35.47439 -34.50185 -33.53199 -33.06351 -31.56636 -30.05683 -28.10398 -27.97326 -26.19146 -24.87926 -23.87336 -23.38797 -22.56878 -21.27731 -20.51442 -19.35569 -18.84583 -18.41251 -18.04491 -17.50772 -17.11823 -16.70044 -16.47018 -16.27930 -16.10873 -15.83150 -15.49815 -15.35791 -14.98081 -14.89437 -14.66317 -14.40109 -14.16772 -13.93332 -13.63406 -13.42591 -13.34999 -13.16509 -12.92839 -12.90253 -12.73473 -12.44098 -12.14571 -12.08879 -11.99030 -11.95724 -11.77867 -11.41222 -11.37056 -11.25195 -10.92424 -10.78543 -10.73705 -10.44055 -10.11329 -8.84135 -8.31647 -6.34548 -0.04350 0.20536 1.32810 1.35558 1.49355 1.54154 1.99558 2.31069 2.34288 2.72603 2.77061 3.04262 3.35897 3.68837 3.74498 3.81038 3.87857 3.93487 4.02013 4.06669 4.09426 4.20103 4.35099 4.36210 4.39601 4.47570 4.50258 4.59899 4.61919 4.72192 4.72567 4.82121 4.96207 4.97121 4.99260 5.00948 5.09540 5.18081 5.25072 5.34107 5.35164 5.43460 5.55380 5.56793 5.60841 6.02465 6.19965 6.22307 6.39101 6.72388 6.85995 7.13039 7.30842 8.83812 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026209 B = 0.001997 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.089593 B =14017.720613 C =14373.837958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.124 0.876 4 C 0.042 3.958 5 N -0.473 5.473 6 C 0.281 3.719 7 C -0.164 4.164 8 C -0.072 4.072 9 C 0.066 3.934 10 N -0.655 5.655 11 C 0.517 3.483 12 O -0.563 6.563 13 C -0.113 4.113 14 C 0.004 3.996 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.943 5.943 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.261 1.261 23 C 0.107 3.893 24 N -0.511 5.511 25 C 0.028 3.972 26 C 0.086 3.914 27 H 0.076 0.924 28 C -0.142 4.142 29 O -0.390 6.390 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.431 0.569 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.010 0.990 41 H 0.011 0.989 42 H 0.267 0.733 43 H 0.188 0.812 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 19.863 -27.366 33.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 H 0.141 0.859 4 C -0.085 4.085 5 N -0.192 5.192 6 C 0.049 3.951 7 C -0.187 4.187 8 C -0.100 4.100 9 C -0.032 4.032 10 N -0.303 5.303 11 C 0.307 3.693 12 O -0.440 6.440 13 C -0.153 4.153 14 C -0.034 4.034 15 C -0.566 4.566 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.762 3.238 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.185 1.185 23 C -0.053 4.053 24 N -0.225 5.225 25 C -0.098 4.098 26 C 0.028 3.972 27 H 0.094 0.906 28 C -0.199 4.199 29 O -0.309 6.309 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.170 0.830 36 H 0.153 0.847 37 H 0.271 0.729 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.028 0.972 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.205 0.795 44 H 0.064 0.936 45 H 0.123 0.877 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.849 20.440 -27.910 34.644 hybrid contribution 0.045 -1.537 0.998 1.833 sum 1.894 18.903 -26.912 32.942 Atomic orbital electron populations 1.22255 0.94923 1.02911 1.02841 1.22466 0.94853 0.96614 0.83136 0.85881 1.22623 0.99196 0.86732 0.99942 1.59490 1.55378 1.03852 1.00431 1.19952 0.92421 0.90393 0.92328 1.21581 1.03584 0.93940 0.99607 1.21673 0.95844 1.01118 0.91387 1.18882 1.02536 0.93408 0.88332 1.43389 1.24527 1.38214 1.24158 1.21484 0.82381 0.78201 0.87225 1.90649 1.27323 1.61252 1.64789 1.21517 1.01893 0.99753 0.92124 1.19241 0.95154 0.94436 0.94609 1.21425 1.09569 1.20376 1.05245 0.92953 1.25809 1.00996 0.96403 0.95338 1.70023 1.40642 1.28740 1.18954 0.85839 0.80001 0.79330 0.78592 1.19349 1.20636 1.18498 1.22706 0.98374 0.89227 0.95037 1.67591 1.12465 1.39070 1.03392 1.23092 0.98568 0.99978 0.88140 1.22293 0.99541 0.81250 0.94131 0.90650 1.21764 1.01563 1.01307 0.95287 1.88048 1.75861 1.23683 1.43342 0.91131 0.91439 0.92167 0.89200 0.93472 0.82982 0.84692 0.72917 0.87136 0.87313 0.97166 0.97025 0.92429 0.79533 0.93604 0.87684 0.92153 0.89118 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 8.89 71.98 0.64 -1.63 16 2 C 0.09 1.26 3.92 30.63 0.12 1.38 16 3 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.04 0.75 4.23 86.31 0.37 1.11 16 5 N -0.47 -9.00 4.12 -700.77 -2.89 -11.89 16 6 C 0.28 6.36 6.40 133.00 0.85 7.21 16 7 C -0.16 -3.76 9.22 22.48 0.21 -3.56 16 8 C -0.07 -1.93 8.80 22.56 0.20 -1.73 16 9 C 0.07 1.60 6.32 38.18 0.24 1.84 16 10 N -0.66 -15.09 5.36 -303.06 -1.62 -16.72 16 11 C 0.52 16.69 7.69 87.66 0.67 17.37 16 12 O -0.56 -22.74 13.46 -3.09 -0.04 -22.78 16 13 C -0.11 -3.89 5.64 29.85 0.17 -3.72 16 14 C 0.00 0.17 3.33 29.85 0.10 0.27 16 15 C -0.53 -29.52 9.66 25.60 0.25 -29.27 16 16 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 17 C 0.01 0.72 5.47 84.65 0.46 1.18 16 18 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 19 Si 0.94 45.89 27.47 68.60 1.88 47.77 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.26 -12.63 6.54 99.48 0.65 -11.98 16 23 C 0.11 2.23 11.11 84.76 0.94 3.17 16 24 N -0.51 -11.79 8.70 -192.68 -1.68 -13.47 16 25 C 0.03 0.44 4.68 86.31 0.40 0.84 16 26 C 0.09 1.16 3.03 30.62 0.09 1.26 16 27 H 0.08 0.99 6.49 -2.38 -0.02 0.98 16 28 C -0.14 -1.38 9.57 71.98 0.69 -0.69 16 29 O -0.39 -6.55 10.28 -148.98 -1.53 -8.08 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 0.92 6.13 -2.39 -0.01 0.90 16 33 H 0.09 1.68 7.86 -2.39 -0.02 1.66 16 34 H 0.05 0.93 8.03 -2.39 -0.02 0.91 16 35 H 0.15 2.85 7.20 -2.91 -0.02 2.83 16 36 H 0.14 4.12 6.32 -2.91 -0.02 4.10 16 37 H 0.43 6.44 8.83 -92.71 -0.82 5.62 16 38 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.01 0.50 7.15 -2.39 -0.02 0.48 16 41 H 0.01 0.56 7.53 -2.39 -0.02 0.54 16 42 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 43 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.10 1.34 6.84 -2.39 -0.02 1.32 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -73.58 382.09 0.92 -72.66 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.10 Total: 15.39 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.40 Total: -4.96 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -5.89 Total: -100.00 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.57 Total: -30.86 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -73.58 0.92 -72.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.351 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds