Wall clock time and date at job start Tue Mar 31 2020 17:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.51131 * 2 1 4 4 C 1.53239 * 109.49094 * 239.93853 * 2 1 3 5 5 N 1.47081 * 108.51760 * 186.20834 * 4 2 1 6 6 C 1.34777 * 120.88084 * 231.21026 * 5 4 2 7 7 O 1.21589 * 119.99892 * 354.57940 * 6 5 4 8 8 N 1.34771 * 120.00141 * 174.57841 * 6 5 4 9 9 C 1.39954 * 120.00038 * 187.68538 * 8 6 5 10 10 C 1.38958 * 120.03334 * 32.47760 * 9 8 6 11 11 C 1.38157 * 120.05982 * 179.77127 * 10 9 8 12 12 C 1.38170 * 120.14225 * 0.51008 * 11 10 9 13 13 C 1.38908 * 120.06950 * 359.74560 * 12 11 10 14 14 O 1.35749 * 120.03480 * 180.02562 * 13 12 11 15 15 C 1.34826 * 117.00115 * 174.34419 * 14 13 12 16 16 H 1.08003 * 120.00101 * 4.91145 * 15 14 13 17 17 C 1.38649 * 120.00263 * 184.90986 * 15 14 13 18 18 N 1.31552 * 120.00223 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99717 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47279 * 89.99960 * 19 17 15 21 21 H 1.48498 * 109.47080 * 209.99874 * 19 17 15 22 22 H 1.48502 * 109.47426 * 329.99834 * 19 17 15 23 23 C 1.38705 * 120.03100 * 212.76106 * 9 8 6 24 24 C 1.47086 * 118.26344 * 51.16541 * 5 4 2 25 25 C 1.53240 * 108.51442 * 308.86216 * 24 5 4 26 26 H 1.09004 * 109.49071 * 293.81091 * 25 24 5 27 27 C 1.52998 * 109.49523 * 173.76312 * 25 24 5 28 28 N 1.46892 * 109.36683 * 53.78385 * 25 24 5 29 29 C 1.46899 * 111.00406 * 172.76086 * 28 25 24 30 30 H 1.08996 * 109.47008 * 299.92838 * 1 2 3 31 31 H 1.08994 * 109.47130 * 59.93367 * 1 2 3 32 32 H 1.08998 * 109.46678 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.62850 * 305.91130 * 4 2 1 34 34 H 1.09003 * 109.63252 * 66.49782 * 4 2 1 35 35 H 0.96994 * 120.00472 * 7.67936 * 8 6 5 36 36 H 1.07995 * 119.97059 * 0.02957 * 10 9 8 37 37 H 1.08010 * 119.92596 * 180.27696 * 11 10 9 38 38 H 1.08000 * 119.96442 * 179.72196 * 12 11 10 39 39 H 0.97005 * 120.00306 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.07109 * 359.97438 * 23 9 8 41 41 H 1.08993 * 109.65704 * 189.13748 * 24 5 4 42 42 H 1.09007 * 109.60619 * 68.55027 * 24 5 4 43 43 H 1.09001 * 109.46730 * 300.05382 * 27 25 24 44 44 H 1.09005 * 109.47510 * 60.04663 * 27 25 24 45 45 H 1.08999 * 109.47284 * 180.02562 * 27 25 24 46 46 H 1.09001 * 109.47035 * 60.00358 * 29 28 25 47 47 H 1.08998 * 109.47683 * 180.02562 * 29 28 25 48 48 H 1.08999 * 109.47246 * 300.00609 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7236 -1.2503 5 7 3.5042 -0.8430 -1.1555 6 6 4.2977 -0.4483 -2.1708 7 8 3.8050 -0.0788 -3.2192 8 7 5.6374 -0.4632 -2.0242 9 6 6.4558 0.0951 -3.0127 10 6 6.0137 1.1904 -3.7448 11 6 6.8231 1.7449 -4.7175 12 6 8.0696 1.2062 -4.9729 13 6 8.5150 0.1081 -4.2481 14 8 9.7400 -0.4203 -4.4992 15 6 10.1592 -1.4087 -3.6836 16 1 9.4976 -1.7998 -2.9249 17 6 11.4396 -1.9230 -3.8190 18 7 11.8485 -2.8877 -3.0236 19 14 12.5842 -1.2460 -5.1310 20 1 13.3658 -0.1149 -4.5702 21 1 13.5123 -2.3156 -5.5779 22 1 11.7842 -0.7695 -6.2879 23 6 7.7066 -0.4480 -3.2667 24 6 4.0789 -1.4036 0.0770 25 6 3.4867 -0.6536 1.2750 26 1 3.8235 0.3830 1.2577 27 6 3.9486 -1.3189 2.5730 28 7 2.0203 -0.6938 1.1984 29 6 1.4141 -0.1359 2.4146 30 1 -0.3633 0.5127 0.8906 31 1 -0.3633 0.5148 -0.8893 32 1 -0.3632 -1.0277 -0.0005 33 1 1.5958 -1.7168 -1.3064 34 1 1.7776 -0.1502 -2.1389 35 1 6.0344 -0.8607 -1.2335 36 1 5.0383 1.6112 -3.5503 37 1 6.4791 2.5990 -5.2822 38 1 8.6981 1.6392 -5.7370 39 1 12.7442 -3.2479 -3.1185 40 1 8.0506 -1.3018 -2.7019 41 1 5.1616 -1.2795 0.0662 42 1 3.8294 -2.4623 0.1483 43 1 3.6117 -2.3554 2.5898 44 1 5.0368 -1.2897 2.6290 45 1 3.5269 -0.7854 3.4248 46 1 1.7294 0.9005 2.5353 47 1 0.3281 -0.1783 2.3317 48 1 1.7350 -0.7163 3.2797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296766364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:42 Heat of formation + Delta-G solvation = 1.912958 kcal Electronic energy + Delta-G solvation = -28967.925069 eV Core-core repulsion = 25024.698860 eV Total energy + Delta-G solvation = -3943.226209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89236 -39.47420 -38.62876 -36.64762 -35.00968 -34.45017 -33.79368 -32.33911 -29.97438 -29.36299 -28.72440 -27.37683 -27.12397 -25.22065 -24.56889 -22.11961 -21.75305 -21.58997 -20.39778 -19.51879 -18.60036 -17.78340 -17.50244 -16.58340 -16.10111 -15.69714 -15.56510 -15.21562 -14.95543 -14.75839 -14.51830 -14.13387 -13.91503 -13.78742 -13.45448 -13.33446 -13.26339 -13.07844 -12.66916 -12.47532 -12.31347 -12.23292 -12.15193 -11.98504 -11.86892 -11.68042 -11.33879 -11.28206 -11.12481 -11.10175 -10.89062 -10.77046 -10.27478 -10.01664 -9.67474 -9.47669 -8.97587 -8.84278 -8.57059 -7.75258 -7.25331 -6.41773 -4.08835 1.98421 2.30560 2.52716 3.21352 3.24223 3.27010 3.41838 3.44998 3.78436 4.24462 4.37041 4.45804 4.53944 4.58523 4.79249 4.82037 4.88215 4.92138 5.06429 5.09544 5.10663 5.15469 5.27698 5.33107 5.33851 5.42185 5.55377 5.58489 5.61036 5.64414 5.71988 5.79533 5.93133 5.93717 6.01142 6.10743 6.19992 6.29871 6.45753 6.61501 6.69582 6.78438 6.93451 7.13696 7.22663 7.25938 7.62257 7.78664 7.92943 8.03743 8.58835 8.94003 9.56739 10.66002 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.002657 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.319807 B =10533.896577 C =11684.553780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.045 0.955 4 C 0.141 3.859 5 N -0.632 5.632 6 C 0.708 3.292 7 O -0.569 6.569 8 N -0.682 5.682 9 C 0.200 3.800 10 C -0.198 4.198 11 C -0.063 4.063 12 C -0.203 4.203 13 C 0.176 3.824 14 O -0.216 6.216 15 C -0.389 4.389 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.247 4.247 24 C 0.118 3.882 25 C 0.068 3.932 26 H 0.047 0.953 27 C -0.149 4.149 28 N -0.532 5.532 29 C 0.017 3.983 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.402 0.598 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.024 0.976 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.099 4.975 11.604 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 H 0.063 0.937 4 C 0.018 3.982 5 N -0.370 5.370 6 C 0.411 3.589 7 O -0.445 6.445 8 N -0.331 5.331 9 C 0.106 3.894 10 C -0.219 4.219 11 C -0.082 4.082 12 C -0.223 4.223 13 C 0.124 3.876 14 O -0.121 6.121 15 C -0.465 4.465 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.269 4.269 24 C -0.006 4.006 25 C -0.042 4.042 26 H 0.065 0.935 27 C -0.207 4.207 28 N -0.258 5.258 29 C -0.131 4.131 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.240 0.760 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.042 0.958 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.274 4.644 10.704 23.391 hybrid contribution 1.048 0.612 0.267 1.242 sum -19.226 5.256 10.970 22.751 Atomic orbital electron populations 1.21876 0.93298 1.03002 1.02253 1.22056 0.95915 0.95940 0.90410 0.93660 1.21607 0.77850 1.01247 0.97540 1.47323 1.06662 1.66996 1.15984 1.15772 0.81181 0.78525 0.83460 1.90933 1.73785 1.53756 1.26040 1.42785 1.04405 1.62229 1.23674 1.17211 0.89706 0.92338 0.90181 1.20603 1.01296 0.98313 1.01724 1.20516 0.92781 0.98412 0.96486 1.20230 0.98145 0.98840 1.05085 1.18769 0.85429 0.91260 0.92177 1.83599 1.28172 1.48506 1.51858 1.20721 0.99841 1.11668 1.14236 0.87808 1.24448 0.96412 0.95480 0.97616 1.69640 1.19658 1.25348 1.37335 0.86184 0.80026 0.78615 0.82113 1.19898 1.20836 1.18290 1.20874 0.95657 1.05099 1.05231 1.21823 0.97552 0.98428 0.82753 1.22000 0.87802 0.98698 0.95672 0.93526 1.21900 1.01500 1.01664 0.95591 1.62002 1.05878 1.55561 1.02349 1.22522 1.00402 0.97514 0.92660 0.91993 0.91645 0.91356 0.90875 0.88447 0.76035 0.86166 0.86483 0.86408 0.91093 0.84716 0.89973 0.90131 0.91273 0.91524 0.91935 0.95768 0.90747 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.73 37.16 0.32 -0.63 16 2 C 0.07 0.58 2.60 -67.59 -0.18 0.40 16 3 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 4 C 0.14 1.51 5.87 -3.60 -0.02 1.48 16 5 N -0.63 -7.79 3.01 -178.18 -0.54 -8.33 16 6 C 0.71 11.44 8.01 -86.92 -0.70 10.74 16 7 O -0.57 -11.07 13.56 5.29 0.07 -11.00 16 8 N -0.68 -11.01 5.25 -14.24 -0.07 -11.09 16 9 C 0.20 3.88 6.28 -83.71 -0.53 3.36 16 10 C -0.20 -3.80 8.65 -39.34 -0.34 -4.14 16 11 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 12 C -0.20 -4.14 9.99 -39.36 -0.39 -4.53 16 13 C 0.18 4.11 6.64 -39.13 -0.26 3.85 16 14 O -0.22 -5.70 8.58 0.06 0.00 -5.70 16 15 C -0.39 -10.87 9.95 30.88 0.31 -10.57 16 16 H 0.10 2.94 5.44 -52.48 -0.29 2.66 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.24 13.96 55.48 0.77 -24.46 16 19 Si 0.91 21.64 28.62 -169.99 -4.86 16.77 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.26 -6.24 7.11 56.52 0.40 -5.83 16 23 C -0.25 -5.37 9.08 -39.21 -0.36 -5.73 16 24 C 0.12 1.14 5.88 -3.60 -0.02 1.12 16 25 C 0.07 0.57 2.60 -67.59 -0.18 0.39 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 C -0.15 -0.98 8.72 37.16 0.32 -0.66 16 28 N -0.53 -4.38 4.58 -226.62 -1.04 -5.42 16 29 C 0.02 0.11 8.56 60.06 0.51 0.62 16 30 H 0.06 0.35 6.23 -51.93 -0.32 0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.16 7.10 -51.93 -0.37 0.79 16 35 H 0.40 5.41 6.33 -40.82 -0.26 5.15 16 36 H 0.12 2.29 6.43 -52.49 -0.34 1.95 16 37 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 3.01 5.64 -52.49 -0.30 2.71 16 41 H 0.08 0.74 5.65 -51.93 -0.29 0.44 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.37 6.33 -51.93 -0.33 0.04 16 46 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.07 0.42 5.95 -51.93 -0.31 0.11 16 48 H 0.07 0.43 6.21 -51.93 -0.32 0.10 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -32.16 374.95 -8.91 -41.07 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.91 Total: 6.65 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.99 Total: -4.16 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.87 Total: -49.29 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.07 Total: -16.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.86 Total: 16.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.16 -8.91 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296766364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.981 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds