Wall clock time and date at job start Tue Mar 31 2020 18:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.53883 * 2 1 4 4 C 1.53093 * 109.50745 * 239.89415 * 2 1 3 5 5 N 1.47015 * 109.26056 * 183.21593 * 4 2 1 6 6 C 1.39187 * 111.00176 * 182.39507 * 5 4 2 7 7 C 1.39427 * 120.82787 * 236.36459 * 6 5 4 8 8 C 1.38232 * 119.26151 * 179.97438 * 7 6 5 9 9 N 1.31648 * 120.99749 * 0.02562 * 8 7 6 10 10 C 1.32838 * 121.82494 * 359.97438 * 9 8 7 11 11 C 1.48185 * 119.68789 * 180.02562 * 10 9 8 12 12 O 1.21504 * 119.99999 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99767 * 359.97438 * 11 10 9 14 14 C 1.46505 * 119.99723 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47088 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47423 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99157 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00218 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99831 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99715 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47413 * 90.00599 * 20 18 16 22 22 H 1.48503 * 109.47030 * 210.00196 * 20 18 16 23 23 H 1.48501 * 109.47377 * 330.00064 * 20 18 16 24 24 C 1.39034 * 120.62185 * 359.74338 * 10 9 8 25 25 C 1.47015 * 110.75017 * 58.61185 * 5 4 2 26 26 C 1.53094 * 109.26042 * 301.38578 * 25 5 4 27 27 H 1.09004 * 109.50690 * 296.91866 * 26 25 5 28 28 C 1.53001 * 109.54387 * 176.80625 * 26 25 5 29 29 O 1.43015 * 109.50666 * 120.10948 * 2 1 3 30 30 H 1.08999 * 109.47003 * 299.88864 * 1 2 3 31 31 H 1.09001 * 109.47015 * 59.89270 * 1 2 3 32 32 H 1.09000 * 109.46819 * 179.89084 * 1 2 3 33 33 H 1.09004 * 109.50414 * 303.14842 * 4 2 1 34 34 H 1.08999 * 109.51106 * 63.27454 * 4 2 1 35 35 H 1.07998 * 120.37024 * 359.95100 * 7 6 5 36 36 H 1.07999 * 119.49677 * 180.02562 * 8 7 6 37 37 H 0.97003 * 120.00626 * 0.02562 * 13 11 10 38 38 H 1.09002 * 109.47056 * 300.00071 * 14 13 11 39 39 H 1.08993 * 109.46749 * 60.00361 * 14 13 11 40 40 H 1.09002 * 109.47313 * 300.00584 * 15 14 13 41 41 H 1.09005 * 109.47065 * 60.00094 * 15 14 13 42 42 H 0.97005 * 119.99948 * 179.97438 * 19 18 16 43 43 H 1.07993 * 120.52176 * 180.26055 * 24 10 9 44 44 H 1.09003 * 109.50470 * 181.44930 * 25 5 4 45 45 H 1.09000 * 109.50644 * 61.32257 * 25 5 4 46 46 H 1.09001 * 109.46705 * 300.19900 * 28 26 25 47 47 H 1.09005 * 109.46673 * 60.19535 * 28 26 25 48 48 H 1.09000 * 109.47278 * 180.19427 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2484 5 7 3.5094 -0.7884 -1.2045 6 6 4.0166 -1.3932 -2.3509 7 6 4.8411 -2.5140 -2.2622 8 6 5.3264 -3.0892 -3.4217 9 7 5.0219 -2.5942 -4.6030 10 6 4.2404 -1.5283 -4.7356 11 6 3.9277 -1.0112 -6.0886 12 8 3.2139 -0.0363 -6.2164 13 7 4.4361 -1.6216 -7.1774 14 6 4.1275 -1.1100 -8.5150 15 6 4.8232 -1.9774 -9.5659 16 6 4.5053 -1.4516 -10.9419 17 1 3.8708 -0.5850 -11.0554 18 6 5.0253 -2.0761 -12.0558 19 7 5.7983 -3.1310 -11.9174 20 14 4.6317 -1.4238 -13.7613 21 1 5.6520 -0.4192 -14.1547 22 1 4.6405 -2.5454 -14.7344 23 1 3.2896 -0.7882 -13.7507 24 6 3.7082 -0.8968 -3.6170 25 6 3.9640 -1.4883 0.0058 26 6 3.4335 -0.7568 1.2416 27 1 3.8534 0.2485 1.2777 28 6 3.8359 -1.5241 2.5026 29 8 2.0076 -0.6763 1.1662 30 1 -0.3633 0.5121 0.8910 31 1 -0.3633 0.5155 -0.8890 32 1 -0.3633 -1.0277 -0.0020 33 1 1.6332 -1.7342 -1.2759 34 1 1.7273 -0.1795 -2.1390 35 1 5.0980 -2.9280 -1.2984 36 1 5.9651 -3.9578 -3.3575 37 1 5.0064 -2.3996 -7.0754 38 1 3.0498 -1.1396 -8.6756 39 1 4.4796 -0.0820 -8.6010 40 1 5.9010 -1.9483 -9.4054 41 1 4.4708 -3.0053 -9.4798 42 1 6.1638 -3.5706 -12.7010 43 1 3.0696 -0.0329 -3.7269 44 1 5.0537 -1.5020 0.0307 45 1 3.5867 -2.5109 -0.0018 46 1 3.4170 -2.5297 2.4651 47 1 4.9227 -1.5851 2.5595 48 1 3.4547 -1.0042 3.3815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331316249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:55 Heat of formation + Delta-G solvation = -69.086428 kcal Electronic energy + Delta-G solvation = -27926.218232 eV Core-core repulsion = 23979.913258 eV Total energy + Delta-G solvation = -3946.304973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16621 -40.96398 -39.86960 -37.36589 -36.68759 -34.86248 -34.85207 -32.75489 -32.52673 -31.40148 -30.78274 -28.24834 -27.08147 -26.55706 -24.95949 -23.71901 -22.92449 -22.74263 -21.83244 -21.29649 -19.25476 -18.57419 -18.14455 -17.77786 -17.25858 -16.78530 -16.66794 -16.58854 -16.50225 -16.27501 -16.18942 -15.62553 -15.24611 -15.08052 -14.84480 -14.79521 -14.31115 -14.29478 -14.02454 -13.55541 -13.25243 -13.21742 -13.07929 -12.94790 -12.88339 -12.82667 -12.53891 -12.43146 -12.27245 -12.01059 -11.77382 -11.69868 -11.60155 -11.52591 -11.25600 -10.65006 -10.61269 -10.58841 -10.39558 -10.03666 -9.45124 -8.23707 -6.34855 -0.45271 0.10948 1.41864 1.42935 1.54362 1.62178 2.00576 2.34907 2.44183 2.61733 2.79555 3.10644 3.12502 3.48378 3.63108 3.71019 3.80101 3.91617 3.97478 3.99852 4.06497 4.18691 4.31364 4.35753 4.40798 4.45273 4.45438 4.53325 4.54651 4.64196 4.69840 4.72648 4.78245 4.81423 4.93457 4.96636 5.07287 5.20621 5.21563 5.28220 5.36543 5.45824 5.55339 5.58825 5.77044 5.85425 6.14227 6.17026 6.41446 6.77213 6.81358 7.09753 7.34278 8.88339 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.001925 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.699614 B =14543.504588 C =15369.744586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.092 3.908 3 H 0.069 0.931 4 C 0.025 3.975 5 N -0.491 5.491 6 C 0.146 3.854 7 C -0.190 4.190 8 C 0.124 3.876 9 N -0.498 5.498 10 C 0.088 3.912 11 C 0.559 3.441 12 O -0.575 6.575 13 N -0.697 5.697 14 C 0.138 3.862 15 C 0.023 3.977 16 C -0.547 4.547 17 H 0.061 0.939 18 C 0.005 3.995 19 N -0.926 5.926 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.140 4.140 25 C 0.016 3.984 26 C 0.085 3.915 27 H 0.066 0.934 28 C -0.140 4.140 29 O -0.391 6.391 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.414 0.586 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.266 0.734 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 0.820 33.308 33.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.087 0.913 4 C -0.100 4.100 5 N -0.205 5.205 6 C 0.039 3.961 7 C -0.213 4.213 8 C -0.035 4.035 9 N -0.212 5.212 10 C -0.049 4.049 11 C 0.344 3.656 12 O -0.455 6.455 13 N -0.347 5.347 14 C 0.014 3.986 15 C -0.015 4.015 16 C -0.585 4.585 17 H 0.080 0.920 18 C -0.194 4.194 19 N -0.566 5.566 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.190 1.190 24 C -0.164 4.164 25 C -0.110 4.110 26 C 0.027 3.973 27 H 0.084 0.916 28 C -0.197 4.197 29 O -0.311 6.311 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.196 0.804 36 H 0.215 0.785 37 H 0.251 0.749 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.157 0.843 44 H 0.132 0.868 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.177 1.449 32.532 32.831 hybrid contribution -0.157 -0.227 -0.783 0.830 sum -4.334 1.223 31.749 32.066 Atomic orbital electron populations 1.21762 0.91135 1.03350 1.03781 1.22209 0.96132 0.95291 0.83007 0.91318 1.23068 0.84200 1.01612 1.01137 1.59001 1.10487 1.49862 1.01199 1.19192 0.95683 0.91222 0.89964 1.22795 1.01283 0.94723 1.02453 1.23278 0.95738 0.98752 0.85776 1.67602 1.12870 1.10662 1.30038 1.20676 0.97172 0.94303 0.92741 1.18378 0.79789 0.82765 0.84634 1.90715 1.39685 1.27999 1.87097 1.46059 1.50143 1.32676 1.05779 1.21372 0.99369 0.97762 0.80048 1.19134 0.95116 0.94588 0.92625 1.21453 1.31090 1.14109 0.91856 0.92028 1.25918 0.94625 0.95042 1.03779 1.70075 1.33808 1.21295 1.31403 0.85394 0.78991 0.78005 0.78335 1.19735 1.20487 1.18960 1.21653 1.02369 1.01488 0.90850 1.23234 1.02988 0.96969 0.87843 1.22330 0.80614 0.99506 0.94815 0.91566 1.21755 1.02818 1.00303 0.94844 1.88016 1.21816 1.78421 1.42840 0.90753 0.89681 0.91864 0.92701 0.88951 0.80413 0.78473 0.74884 0.92856 0.92893 0.97459 0.97426 0.92525 0.84290 0.86847 0.91538 0.91670 0.88751 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 71.98 0.69 -0.91 16 2 C 0.09 1.29 3.43 30.63 0.10 1.39 16 3 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 4 C 0.03 0.40 4.69 86.31 0.41 0.81 16 5 N -0.49 -8.07 4.77 -693.74 -3.31 -11.38 16 6 C 0.15 2.89 5.65 38.55 0.22 3.10 16 7 C -0.19 -2.88 8.89 22.55 0.20 -2.68 16 8 C 0.12 2.29 11.17 84.72 0.95 3.23 16 9 N -0.50 -13.72 9.54 -185.21 -1.77 -15.48 16 10 C 0.09 2.74 6.75 41.83 0.28 3.02 16 11 C 0.56 21.63 7.81 86.89 0.68 22.31 16 12 O -0.57 -25.20 16.32 -3.73 -0.06 -25.26 16 13 N -0.70 -27.88 5.55 -465.65 -2.58 -30.46 16 14 C 0.14 6.29 5.61 86.38 0.48 6.78 16 15 C 0.02 1.21 5.09 29.85 0.15 1.36 16 16 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 17 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 18 C 0.01 0.29 5.46 84.66 0.46 0.75 16 19 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 20 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 C -0.14 -3.71 8.81 22.75 0.20 -3.51 16 25 C 0.02 0.17 3.63 86.31 0.31 0.49 16 26 C 0.09 0.95 3.42 30.63 0.10 1.05 16 27 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 28 C -0.14 -0.94 9.57 71.98 0.69 -0.25 16 29 O -0.39 -5.98 10.11 -148.98 -1.51 -7.49 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.57 6.92 -2.39 -0.02 1.55 16 35 H 0.18 1.33 5.96 -2.91 -0.02 1.32 16 36 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.41 15.57 7.80 -92.71 -0.72 14.85 16 38 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 43 H 0.14 3.86 6.85 -2.91 -0.02 3.84 16 44 H 0.11 0.84 7.26 -2.39 -0.02 0.82 16 45 H 0.07 0.67 7.57 -2.39 -0.02 0.65 16 46 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -72.17 391.40 -0.51 -72.68 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.24 Total: 20.30 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.16 Total: 5.91 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -7.37 Total: -112.47 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.57 Total: -32.75 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.17 -0.51 -72.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331316249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.597 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds