Wall clock time and date at job start Tue Mar 31 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.54530 * 2 1 4 4 C 1.53100 * 109.51013 * 239.89566 * 2 1 3 5 5 N 1.47012 * 109.26106 * 183.21489 * 4 2 1 6 6 C 1.39194 * 111.00027 * 182.38873 * 5 4 2 7 7 C 1.39429 * 120.83042 * 0.28860 * 6 5 4 8 8 C 1.38231 * 119.26081 * 180.29726 * 7 6 5 9 9 N 1.31651 * 120.99278 * 359.68639 * 8 7 6 10 10 C 1.32831 * 121.83048 * 0.02562 * 9 8 7 11 11 C 1.48181 * 119.68979 * 179.97438 * 10 9 8 12 12 O 1.21510 * 119.99834 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99895 * 0.02562 * 11 10 9 14 14 C 1.46503 * 119.99717 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46723 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.46902 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00491 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00344 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99781 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47091 * 89.99750 * 20 18 16 22 22 H 1.48501 * 109.47138 * 209.99911 * 20 18 16 23 23 H 1.48497 * 109.47358 * 330.00057 * 20 18 16 24 24 C 1.39037 * 120.61925 * 0.02562 * 10 9 8 25 25 C 1.47012 * 110.75186 * 58.61851 * 5 4 2 26 26 C 1.53099 * 109.25369 * 301.38045 * 25 5 4 27 27 H 1.09004 * 109.54247 * 176.80985 * 26 25 5 28 28 C 1.52997 * 109.50782 * 296.91325 * 26 25 5 29 29 O 1.43009 * 109.50957 * 120.10994 * 2 1 3 30 30 H 1.08996 * 109.47237 * 180.10708 * 1 2 3 31 31 H 1.08994 * 109.46974 * 300.11066 * 1 2 3 32 32 H 1.09001 * 109.46705 * 60.10518 * 1 2 3 33 33 H 1.09004 * 109.50431 * 63.27819 * 4 2 1 34 34 H 1.09003 * 109.53769 * 303.17776 * 4 2 1 35 35 H 1.07995 * 120.37201 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.49897 * 179.70128 * 8 7 6 37 37 H 0.96996 * 119.99585 * 359.97438 * 13 11 10 38 38 H 1.08999 * 109.46935 * 299.99588 * 14 13 11 39 39 H 1.08998 * 109.46979 * 60.00186 * 14 13 11 40 40 H 1.08997 * 109.47610 * 300.00217 * 15 14 13 41 41 H 1.09004 * 109.47385 * 60.00057 * 15 14 13 42 42 H 0.97004 * 120.00606 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.51657 * 179.97438 * 24 10 9 44 44 H 1.09001 * 109.51052 * 61.31135 * 25 5 4 45 45 H 1.08997 * 109.50788 * 181.44934 * 25 5 4 46 46 H 1.09004 * 109.47281 * 179.78171 * 28 26 25 47 47 H 1.09000 * 109.47341 * 299.78355 * 28 26 25 48 48 H 1.09003 * 109.47300 * 59.78881 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2484 5 7 3.5093 -0.7883 -1.2045 6 6 4.0166 -1.3932 -2.3509 7 6 3.1642 -1.8419 -3.3590 8 6 3.7026 -2.4436 -4.4810 9 7 5.0041 -2.5922 -4.6119 10 6 5.8541 -2.1751 -3.6802 11 6 7.3103 -2.3671 -3.8764 12 8 8.0928 -1.9882 -3.0275 13 7 7.7667 -2.9621 -4.9964 14 6 9.2065 -3.1513 -5.1905 15 6 9.4532 -3.8454 -6.5315 16 6 10.9342 -4.0396 -6.7315 17 1 11.6298 -3.7021 -5.9775 18 6 11.4012 -4.6490 -7.8768 19 7 12.6935 -4.8189 -8.0512 20 14 10.1980 -5.2334 -9.1808 21 1 9.9579 -4.1411 -10.1578 22 1 10.7648 -6.4116 -9.8849 23 1 8.9148 -5.6119 -8.5364 24 6 5.3902 -1.5611 -2.5223 25 6 3.9640 -1.4884 0.0056 26 6 3.4335 -0.7568 1.2415 27 1 3.7202 -1.3035 2.1399 28 6 4.0230 0.6541 1.2922 29 8 2.0076 -0.6762 1.1661 30 1 -0.3633 -1.0276 0.0019 31 1 -0.3633 0.5155 0.8889 32 1 -0.3633 0.5122 -0.8910 33 1 1.7273 -0.1793 -2.1390 34 1 1.6331 -1.7342 -1.2769 35 1 2.0950 -1.7246 -3.2623 36 1 3.0456 -2.7969 -5.2619 37 1 7.1420 -3.2648 -5.6737 38 1 9.7043 -2.1817 -5.1858 39 1 9.6038 -3.7678 -4.3842 40 1 8.9554 -4.8150 -6.5359 41 1 9.0557 -3.2293 -7.3381 42 1 13.0221 -5.2473 -8.8570 43 1 6.0828 -1.2231 -1.7656 44 1 3.5866 -2.5109 -0.0019 45 1 5.0536 -1.5020 0.0306 46 1 3.6419 1.1758 2.1702 47 1 5.1097 0.5920 1.3497 48 1 3.7372 1.1999 0.3930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331316250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:59 Heat of formation + Delta-G solvation = -39.275704 kcal Electronic energy + Delta-G solvation = -28154.036951 eV Core-core repulsion = 24209.024667 eV Total energy + Delta-G solvation = -3945.012283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44637 -40.11419 -38.75800 -36.65211 -35.03837 -34.06377 -32.81608 -31.83435 -31.71089 -30.25973 -29.86870 -27.70697 -26.11211 -25.38928 -23.96102 -23.14590 -22.44614 -20.79709 -20.44880 -19.96824 -18.28977 -17.40252 -16.94237 -16.79776 -16.52424 -16.16447 -15.72675 -15.47472 -15.19668 -14.97382 -14.93675 -14.75539 -14.21311 -14.12132 -13.92483 -13.59697 -13.42386 -13.08778 -12.94277 -12.81216 -12.60359 -12.54676 -12.36842 -12.17380 -11.75705 -11.64099 -11.46686 -11.19304 -10.94579 -10.90258 -10.38477 -10.36448 -10.09209 -10.01020 -9.90776 -9.53696 -9.44933 -9.29259 -8.70670 -8.61926 -8.50988 -6.08648 -4.08646 0.50113 0.93541 2.74740 2.97721 3.18153 3.28616 3.36123 3.38597 3.45532 3.79910 4.10286 4.14823 4.19117 4.28918 4.40875 4.46965 4.56539 4.57661 4.65590 4.80416 4.82322 4.85788 4.94979 5.01032 5.10511 5.13792 5.18397 5.24529 5.30433 5.38389 5.42249 5.48169 5.53219 5.61617 5.63186 5.84548 6.06554 6.18157 6.21373 6.27419 6.57622 6.58686 6.67267 6.73543 7.15460 7.26285 7.56632 7.68755 7.95390 8.43743 8.51126 8.95420 9.51636 11.04231 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.002048 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.253414 B =13665.561064 C =14497.807883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.073 0.927 4 C 0.018 3.982 5 N -0.481 5.481 6 C 0.145 3.855 7 C -0.211 4.211 8 C 0.125 3.875 9 N -0.477 5.477 10 C 0.111 3.889 11 C 0.560 3.440 12 O -0.539 6.539 13 N -0.701 5.701 14 C 0.127 3.873 15 C -0.023 4.023 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.134 4.134 25 C 0.024 3.976 26 C 0.090 3.910 27 H 0.113 0.887 28 C -0.179 4.179 29 O -0.375 6.375 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.407 0.593 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.264 0.736 43 H 0.150 0.850 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.022 9.523 16.769 34.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.091 0.909 4 C -0.109 4.109 5 N -0.196 5.196 6 C 0.039 3.961 7 C -0.234 4.234 8 C -0.035 4.035 9 N -0.190 5.190 10 C -0.027 4.027 11 C 0.344 3.656 12 O -0.417 6.417 13 N -0.350 5.350 14 C 0.006 3.994 15 C -0.060 4.060 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.157 4.157 25 C -0.102 4.102 26 C 0.032 3.968 27 H 0.131 0.869 28 C -0.237 4.237 29 O -0.294 6.294 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.167 0.833 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.869 9.739 16.731 33.933 hybrid contribution -1.235 -0.641 -0.731 1.571 sum -29.104 9.098 16.000 34.435 Atomic orbital electron populations 1.21750 0.92316 1.03198 1.02990 1.22195 0.95114 0.96123 0.83855 0.90897 1.23086 0.85822 1.01511 1.00498 1.58996 1.10191 1.49105 1.01265 1.19112 0.93196 0.91716 0.92042 1.22400 1.00961 1.02929 0.97090 1.22623 0.90977 0.93954 0.95922 1.67654 1.04130 1.17900 1.29274 1.21218 0.94420 0.96186 0.90874 1.17852 0.85921 0.79039 0.82834 1.90770 1.56307 1.51099 1.43510 1.46209 1.10474 1.58086 1.20271 1.21612 0.76961 1.00948 0.99925 1.19801 0.98772 0.95708 0.91750 1.20911 0.89754 1.39567 1.05828 0.90585 1.24994 0.95080 0.95211 0.97998 1.69900 1.12671 1.43497 1.27620 0.86759 0.81838 0.78625 0.81943 1.20201 1.21299 1.18956 1.21723 0.94034 1.00535 0.99449 1.23037 1.02463 0.96249 0.88443 1.22316 0.80668 0.96761 0.97025 0.86930 1.22327 1.01838 0.96599 1.02916 1.88073 1.20709 1.78000 1.42590 0.91692 0.91239 0.90744 0.88701 0.92262 0.84204 0.82015 0.75722 0.91633 0.91631 0.95853 0.96282 0.92574 0.83264 0.92461 0.88236 0.91948 0.91158 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.57 37.16 0.36 -0.28 16 2 C 0.09 0.53 3.03 -26.68 -0.08 0.45 16 3 H 0.07 0.46 6.49 -51.92 -0.34 0.13 16 4 C 0.02 0.11 3.63 -3.71 -0.01 0.10 16 5 N -0.48 -3.99 4.14 -170.63 -0.71 -4.70 16 6 C 0.15 1.46 5.65 -83.63 -0.47 0.99 16 7 C -0.21 -1.81 8.89 -39.14 -0.35 -2.16 16 8 C 0.12 1.22 11.17 -17.63 -0.20 1.03 16 9 N -0.48 -6.32 9.54 -9.89 -0.09 -6.41 16 10 C 0.11 1.62 6.75 -83.05 -0.56 1.06 16 11 C 0.56 9.99 7.81 -12.17 -0.10 9.90 16 12 O -0.54 -11.01 16.32 5.36 0.09 -10.93 16 13 N -0.70 -12.73 5.55 -61.14 -0.34 -13.07 16 14 C 0.13 2.68 5.61 -4.04 -0.02 2.66 16 15 C -0.02 -0.53 4.16 -27.89 -0.12 -0.65 16 16 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 17 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 20 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 24 C -0.13 -1.68 8.81 -38.84 -0.34 -2.02 16 25 C 0.02 0.18 4.83 -3.71 -0.02 0.16 16 26 C 0.09 0.62 3.92 -26.68 -0.10 0.51 16 27 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 28 C -0.18 -1.17 8.88 37.16 0.33 -0.84 16 29 O -0.37 -2.97 10.28 -35.23 -0.36 -3.33 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.50 7.25 -51.93 -0.38 0.13 16 34 H 0.06 0.38 7.58 -51.93 -0.39 -0.02 16 35 H 0.14 0.81 5.95 -52.49 -0.31 0.49 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.41 6.77 7.80 -40.82 -0.32 6.45 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 41 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.15 1.88 6.86 -52.49 -0.36 1.52 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.77 6.93 -51.93 -0.36 0.41 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.52 6.13 -51.93 -0.32 0.21 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -33.39 383.23 -9.01 -42.39 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.36 Total: 2.64 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.11 Total: -2.32 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.37 Total: -50.94 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.27 Total: -14.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.39 -9.01 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331316250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.118 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds