Wall clock time and date at job start Tue Mar 31 2020 18:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.54530 * 2 1 4 4 C 1.53100 * 109.51013 * 239.89566 * 2 1 3 5 5 N 1.47012 * 109.26106 * 183.21489 * 4 2 1 6 6 C 1.39194 * 111.00027 * 182.38873 * 5 4 2 7 7 C 1.39429 * 120.83042 * 0.28860 * 6 5 4 8 8 C 1.38231 * 119.26081 * 180.29726 * 7 6 5 9 9 N 1.31651 * 120.99278 * 359.68639 * 8 7 6 10 10 C 1.32831 * 121.83048 * 0.02562 * 9 8 7 11 11 C 1.48181 * 119.68979 * 179.97438 * 10 9 8 12 12 O 1.21510 * 119.99834 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99895 * 0.02562 * 11 10 9 14 14 C 1.46503 * 119.99717 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46723 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.46902 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00491 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00344 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99781 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47091 * 89.99750 * 20 18 16 22 22 H 1.48501 * 109.47138 * 209.99911 * 20 18 16 23 23 H 1.48497 * 109.47358 * 330.00057 * 20 18 16 24 24 C 1.39037 * 120.61925 * 0.02562 * 10 9 8 25 25 C 1.47012 * 110.75186 * 58.61851 * 5 4 2 26 26 C 1.53099 * 109.25369 * 301.38045 * 25 5 4 27 27 H 1.09004 * 109.54247 * 176.80985 * 26 25 5 28 28 C 1.52997 * 109.50782 * 296.91325 * 26 25 5 29 29 O 1.43009 * 109.50957 * 120.10994 * 2 1 3 30 30 H 1.08996 * 109.47237 * 180.10708 * 1 2 3 31 31 H 1.08994 * 109.46974 * 300.11066 * 1 2 3 32 32 H 1.09001 * 109.46705 * 60.10518 * 1 2 3 33 33 H 1.09004 * 109.50431 * 63.27819 * 4 2 1 34 34 H 1.09003 * 109.53769 * 303.17776 * 4 2 1 35 35 H 1.07995 * 120.37201 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.49897 * 179.70128 * 8 7 6 37 37 H 0.96996 * 119.99585 * 359.97438 * 13 11 10 38 38 H 1.08999 * 109.46935 * 299.99588 * 14 13 11 39 39 H 1.08998 * 109.46979 * 60.00186 * 14 13 11 40 40 H 1.08997 * 109.47610 * 300.00217 * 15 14 13 41 41 H 1.09004 * 109.47385 * 60.00057 * 15 14 13 42 42 H 0.97004 * 120.00606 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.51657 * 179.97438 * 24 10 9 44 44 H 1.09001 * 109.51052 * 61.31135 * 25 5 4 45 45 H 1.08997 * 109.50788 * 181.44934 * 25 5 4 46 46 H 1.09004 * 109.47281 * 179.78171 * 28 26 25 47 47 H 1.09000 * 109.47341 * 299.78355 * 28 26 25 48 48 H 1.09003 * 109.47300 * 59.78881 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2484 5 7 3.5093 -0.7883 -1.2045 6 6 4.0166 -1.3932 -2.3509 7 6 3.1642 -1.8419 -3.3590 8 6 3.7026 -2.4436 -4.4810 9 7 5.0041 -2.5922 -4.6119 10 6 5.8541 -2.1751 -3.6802 11 6 7.3103 -2.3671 -3.8764 12 8 8.0928 -1.9882 -3.0275 13 7 7.7667 -2.9621 -4.9964 14 6 9.2065 -3.1513 -5.1905 15 6 9.4532 -3.8454 -6.5315 16 6 10.9342 -4.0396 -6.7315 17 1 11.6298 -3.7021 -5.9775 18 6 11.4012 -4.6490 -7.8768 19 7 12.6935 -4.8189 -8.0512 20 14 10.1980 -5.2334 -9.1808 21 1 9.9579 -4.1411 -10.1578 22 1 10.7648 -6.4116 -9.8849 23 1 8.9148 -5.6119 -8.5364 24 6 5.3902 -1.5611 -2.5223 25 6 3.9640 -1.4884 0.0056 26 6 3.4335 -0.7568 1.2415 27 1 3.7202 -1.3035 2.1399 28 6 4.0230 0.6541 1.2922 29 8 2.0076 -0.6762 1.1661 30 1 -0.3633 -1.0276 0.0019 31 1 -0.3633 0.5155 0.8889 32 1 -0.3633 0.5122 -0.8910 33 1 1.7273 -0.1793 -2.1390 34 1 1.6331 -1.7342 -1.2769 35 1 2.0950 -1.7246 -3.2623 36 1 3.0456 -2.7969 -5.2619 37 1 7.1420 -3.2648 -5.6737 38 1 9.7043 -2.1817 -5.1858 39 1 9.6038 -3.7678 -4.3842 40 1 8.9554 -4.8150 -6.5359 41 1 9.0557 -3.2293 -7.3381 42 1 13.0221 -5.2473 -8.8570 43 1 6.0828 -1.2231 -1.7656 44 1 3.5866 -2.5109 -0.0019 45 1 5.0536 -1.5020 0.0306 46 1 3.6419 1.1758 2.1702 47 1 5.1097 0.5920 1.3497 48 1 3.7372 1.1999 0.3930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331316250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:58 Heat of formation + Delta-G solvation = -63.549327 kcal Electronic energy + Delta-G solvation = -28155.089534 eV Core-core repulsion = 24209.024667 eV Total energy + Delta-G solvation = -3946.064867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19792 -41.04511 -39.91561 -37.35318 -36.73856 -34.82729 -34.54586 -32.82213 -32.54261 -31.76655 -30.66750 -28.31629 -27.25293 -26.55801 -24.92244 -24.09374 -23.09858 -22.63823 -21.60701 -20.59828 -19.31436 -18.99459 -18.18050 -17.61221 -17.27469 -16.86532 -16.72354 -16.66771 -16.32774 -16.19422 -15.84501 -15.59344 -15.53444 -15.26767 -14.97532 -14.87134 -14.56777 -14.34825 -13.99243 -13.48242 -13.37377 -13.33704 -13.08283 -13.06325 -12.85268 -12.71518 -12.34390 -12.26392 -12.19185 -12.13925 -11.77665 -11.68450 -11.55128 -11.41694 -11.33175 -10.79287 -10.64744 -10.56809 -10.39386 -10.06089 -9.39858 -8.30473 -6.37606 -0.44133 0.12747 1.39080 1.41183 1.52966 1.62583 1.99564 2.36602 2.38703 2.71134 2.80821 3.04266 3.11931 3.53508 3.65883 3.67694 3.82025 3.92942 3.94498 4.04124 4.09930 4.22827 4.31674 4.33330 4.35402 4.38837 4.42890 4.54598 4.58754 4.60714 4.71291 4.72231 4.73969 4.81160 4.92431 5.01468 5.08259 5.08524 5.25898 5.32521 5.35061 5.37373 5.39734 5.60755 5.62079 5.88030 6.17538 6.20874 6.40329 6.68760 6.81663 7.10201 7.26827 8.85969 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.002048 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.253414 B =13665.561064 C =14497.807883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.070 0.930 4 C 0.016 3.984 5 N -0.485 5.485 6 C 0.147 3.853 7 C -0.191 4.191 8 C 0.125 3.875 9 N -0.496 5.496 10 C 0.088 3.912 11 C 0.559 3.441 12 O -0.575 6.575 13 N -0.697 5.697 14 C 0.142 3.858 15 C -0.013 4.013 16 C -0.538 4.538 17 H 0.032 0.968 18 C 0.006 3.994 19 N -0.948 5.948 20 Si 0.957 3.043 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.240 1.240 24 C -0.140 4.140 25 C 0.025 3.975 26 C 0.091 3.909 27 H 0.124 0.876 28 C -0.175 4.175 29 O -0.388 6.388 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.178 0.822 36 H 0.200 0.800 37 H 0.417 0.583 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.268 0.732 43 H 0.137 0.863 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.667 9.466 15.910 38.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.088 0.912 4 C -0.110 4.110 5 N -0.200 5.200 6 C 0.040 3.960 7 C -0.213 4.213 8 C -0.035 4.035 9 N -0.209 5.209 10 C -0.049 4.049 11 C 0.345 3.655 12 O -0.455 6.455 13 N -0.347 5.347 14 C 0.019 3.981 15 C -0.050 4.050 16 C -0.577 4.577 17 H 0.050 0.950 18 C -0.192 4.192 19 N -0.588 5.588 20 Si 0.779 3.221 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.163 1.163 24 C -0.164 4.164 25 C -0.101 4.101 26 C 0.033 3.967 27 H 0.141 0.859 28 C -0.232 4.232 29 O -0.308 6.308 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.195 0.805 36 H 0.216 0.784 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.155 0.845 44 H 0.074 0.926 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -32.549 9.694 15.893 37.497 hybrid contribution 0.166 -0.542 -0.336 0.659 sum -32.383 9.153 15.558 37.073 Atomic orbital electron populations 1.21759 0.90811 1.03439 1.03844 1.22339 0.96241 0.95749 0.83291 0.91245 1.23222 0.84224 1.02196 1.01336 1.58963 1.11605 1.48654 1.00781 1.19204 0.92297 0.91351 0.93148 1.22794 1.02530 1.00422 0.95600 1.23275 0.89964 0.93161 0.97079 1.67584 1.05608 1.18616 1.29131 1.20635 0.92526 0.99130 0.92572 1.18389 0.87592 0.77726 0.81810 1.90738 1.57856 1.52409 1.44532 1.45971 1.09052 1.58606 1.21032 1.21170 0.78954 0.99604 0.98418 1.19648 0.95508 0.96704 0.93182 1.21216 0.91900 1.39484 1.05068 0.94977 1.26044 0.97169 0.95214 1.00744 1.70063 1.15210 1.44761 1.28755 0.85569 0.79802 0.78257 0.78474 1.18960 1.21007 1.16318 1.21649 0.95375 1.00783 0.98621 1.23025 1.02123 0.96244 0.88688 1.22365 0.80465 0.96817 0.97015 0.85861 1.22276 1.01779 0.96476 1.02672 1.88065 1.20964 1.78254 1.43515 0.91699 0.91496 0.88851 0.86961 0.91561 0.80518 0.78379 0.74540 0.93138 0.93105 0.94625 0.94784 0.92284 0.84493 0.92642 0.88992 0.91472 0.91243 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.57 71.98 0.69 -0.16 16 2 C 0.08 0.82 3.03 30.63 0.09 0.91 16 3 H 0.07 0.75 6.49 -2.38 -0.02 0.73 16 4 C 0.02 0.16 3.63 86.32 0.31 0.47 16 5 N -0.49 -7.12 4.14 -693.74 -2.87 -9.99 16 6 C 0.15 2.63 5.65 38.55 0.22 2.85 16 7 C -0.19 -2.52 8.89 22.56 0.20 -2.32 16 8 C 0.12 1.98 11.17 84.72 0.95 2.93 16 9 N -0.50 -12.17 9.54 -185.21 -1.77 -13.94 16 10 C 0.09 2.54 6.75 41.83 0.28 2.82 16 11 C 0.56 20.41 7.81 86.88 0.68 21.09 16 12 O -0.58 -24.62 16.32 -3.75 -0.06 -24.68 16 13 N -0.70 -25.37 5.55 -465.64 -2.58 -27.95 16 14 C 0.14 6.14 5.61 86.38 0.48 6.63 16 15 C -0.01 -0.59 4.16 29.85 0.12 -0.47 16 16 C -0.54 -31.38 9.66 25.60 0.25 -31.14 16 17 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 18 C 0.01 0.33 5.47 84.66 0.46 0.79 16 19 N -0.95 -59.66 13.96 21.45 0.30 -59.37 16 20 Si 0.96 43.36 27.47 68.60 1.88 45.25 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 24 C -0.14 -3.48 8.81 22.75 0.20 -3.28 16 25 C 0.02 0.36 4.83 86.31 0.42 0.77 16 26 C 0.09 1.15 3.92 30.63 0.12 1.27 16 27 H 0.12 1.24 8.14 -2.39 -0.02 1.23 16 28 C -0.17 -2.15 8.88 71.98 0.64 -1.51 16 29 O -0.39 -5.49 10.28 -148.98 -1.53 -7.02 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.11 0.69 7.25 -2.38 -0.02 0.67 16 34 H 0.07 0.58 7.58 -2.39 -0.02 0.56 16 35 H 0.18 1.03 5.95 -2.91 -0.02 1.01 16 36 H 0.20 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.42 13.42 7.80 -92.71 -0.72 12.69 16 38 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 41 H 0.03 1.49 7.57 -2.38 -0.02 1.48 16 42 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 43 H 0.14 3.64 6.86 -2.91 -0.02 3.62 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 1.45 6.93 -2.39 -0.02 1.44 16 46 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 0.87 6.13 -2.39 -0.01 0.86 16 Total: -1.00 -75.35 383.23 -0.32 -75.66 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.19 Total: 20.39 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.12 Total: 1.65 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -6.92 Total: -111.24 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.59 Total: -31.71 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -75.35 -0.32 -75.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331316250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.115 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds