Wall clock time and date at job start Tue Mar 31 2020 17:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00389 * 2 1 4 4 H 1.09000 * 112.84659 * 18.79714 * 3 2 1 5 5 C 1.53784 * 113.60834 * 247.49601 * 3 2 1 6 6 H 1.08998 * 113.61674 * 25.42822 * 5 3 2 7 7 C 1.52998 * 113.61250 * 156.33376 * 5 3 2 8 8 C 1.53786 * 87.07891 * 270.87966 * 5 3 2 9 9 H 1.09004 * 113.69065 * 220.01378 * 8 5 3 10 10 N 1.46496 * 113.61511 * 89.11801 * 8 5 3 11 11 S 1.65596 * 119.99857 * 117.50012 * 10 8 5 12 12 O 1.42096 * 104.28303 * 308.92992 * 11 10 8 13 13 O 1.42104 * 104.27778 * 181.07433 * 11 10 8 14 14 C 1.81404 * 104.44960 * 65.00485 * 11 10 8 15 15 C 1.53001 * 109.47043 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.47289 * 59.99875 * 15 14 11 17 17 C 1.52999 * 109.46991 * 299.99360 * 15 14 11 18 18 C 1.50702 * 109.46657 * 179.97438 * 15 14 11 19 19 H 1.07995 * 120.00500 * 359.97438 * 18 15 14 20 20 C 1.37884 * 119.99823 * 180.27301 * 18 15 14 21 21 N 1.31510 * 119.99798 * 359.72753 * 20 18 15 22 22 Si 1.86795 * 120.00156 * 179.72658 * 20 18 15 23 23 H 1.48501 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47343 * 120.00110 * 22 20 18 25 25 H 1.48500 * 109.47046 * 240.00071 * 22 20 18 26 26 C 1.53772 * 113.61587 * 149.99759 * 3 2 1 27 27 C 1.53003 * 113.61820 * 334.56061 * 26 3 2 28 28 C 1.53007 * 113.61482 * 203.66275 * 26 3 2 29 29 H 1.08996 * 109.47116 * 300.01176 * 1 2 3 30 30 H 1.09000 * 109.46612 * 60.00537 * 1 2 3 31 31 H 1.08992 * 109.47086 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47247 * 132.58853 * 7 5 3 33 33 H 1.08998 * 109.46918 * 252.58971 * 7 5 3 34 34 H 1.09006 * 109.47166 * 12.59152 * 7 5 3 35 35 H 0.97000 * 119.99953 * 297.50603 * 10 8 5 36 36 H 1.08997 * 109.47047 * 59.99308 * 14 11 10 37 37 H 1.08994 * 109.46744 * 299.99736 * 14 11 10 38 38 H 1.08997 * 109.46891 * 179.97438 * 16 15 14 39 39 H 1.08999 * 109.46571 * 300.00008 * 16 15 14 40 40 H 1.09000 * 109.46916 * 59.99619 * 16 15 14 41 41 H 1.08994 * 109.47570 * 300.00074 * 17 15 14 42 42 H 1.09002 * 109.46858 * 60.00640 * 17 15 14 43 43 H 1.09004 * 109.47249 * 180.02562 * 17 15 14 44 44 H 0.97002 * 120.00436 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.46826 * 157.49564 * 27 26 3 46 46 H 1.08996 * 109.47157 * 277.49965 * 27 26 3 47 47 H 1.09005 * 109.46678 * 37.50051 * 27 26 3 48 48 H 1.09006 * 109.46505 * 305.91944 * 28 26 3 49 49 H 1.08994 * 109.47105 * 65.91510 * 28 26 3 50 50 H 1.08995 * 109.47052 * 185.92308 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3237 5 6 2.7536 1.6487 -1.3018 6 1 2.3928 1.0961 -2.1693 7 6 2.8737 3.1517 -1.5609 8 6 4.0063 1.0328 -0.6564 9 1 4.9224 1.5861 -0.8631 10 7 4.1437 -0.4056 -0.8975 11 16 5.4466 -0.9830 -1.7410 12 8 5.4739 -0.1973 -2.9247 13 8 5.2329 -2.3867 -1.7983 14 6 6.8734 -0.5987 -0.6888 15 6 8.1541 -1.0894 -1.3671 16 6 8.3147 -0.3914 -2.7192 17 6 8.0707 -2.6021 -1.5807 18 6 9.3395 -0.7696 -0.4932 19 1 9.1941 -0.2663 0.4512 20 6 10.6104 -1.1139 -0.9023 21 7 10.7876 -1.7263 -2.0526 22 14 12.0805 -0.7107 0.1773 23 1 11.6161 -0.0251 1.4099 24 1 12.7846 -1.9658 0.5437 25 1 13.0095 0.1798 -0.5638 26 6 3.3756 1.3718 0.7045 27 6 3.5741 0.2825 1.7604 28 6 3.7344 2.7688 1.2154 29 1 -0.3633 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.9006 3.3922 -1.8359 33 1 2.2042 3.4350 -2.3732 34 1 2.6017 3.6989 -0.6583 35 1 3.4716 -1.0198 -0.5630 36 1 6.7592 -1.0963 0.2742 37 1 6.9326 0.4789 -0.5363 38 1 9.2273 -0.7407 -3.2021 39 1 7.4573 -0.6224 -3.3513 40 1 8.3741 0.6863 -2.5669 41 1 7.9563 -3.0993 -0.6175 42 1 7.2133 -2.8330 -2.2130 43 1 8.9833 -2.9518 -2.0635 44 1 11.6816 -1.9689 -2.3403 45 1 4.6402 0.1267 1.9256 46 1 3.1030 0.5910 2.6937 47 1 3.1205 -0.6462 1.4140 48 1 3.6640 3.4843 0.3961 49 1 3.0427 3.0546 2.0078 50 1 4.7519 2.7625 1.6060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332071593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:45 Heat of formation + Delta-G solvation = -96.418132 kcal Electronic energy + Delta-G solvation = -29603.323771 eV Core-core repulsion = 25758.984806 eV Total energy + Delta-G solvation = -3844.338965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93798 -36.78608 -36.39263 -36.22915 -35.20606 -33.08226 -31.82845 -31.63001 -28.24471 -26.86382 -26.59403 -26.35490 -25.67910 -25.20560 -24.32975 -21.04116 -19.58359 -18.94831 -18.67563 -17.28001 -16.53421 -16.23440 -15.84888 -15.74111 -15.45285 -15.17842 -14.70372 -14.58985 -14.15481 -13.77822 -13.29854 -13.02201 -12.98672 -12.89979 -12.60827 -12.47842 -12.45334 -12.26915 -12.13949 -12.00102 -11.76543 -11.54245 -11.43779 -11.33553 -11.07223 -11.04734 -10.98973 -10.86549 -10.67259 -10.57060 -10.32230 -10.23851 -10.05906 -10.03240 -9.61658 -9.54927 -9.42600 -9.02139 -8.61521 -8.38109 -6.01084 -4.12806 0.95847 3.20078 3.26164 3.34582 3.37131 3.50234 4.25735 4.34543 4.36600 4.42646 4.58120 4.77226 4.89845 5.03748 5.05176 5.14131 5.16281 5.23277 5.25324 5.26629 5.35118 5.44543 5.54963 5.57159 5.62454 5.74352 5.77291 5.80635 5.87820 5.94037 5.97925 6.10277 6.23244 6.34576 6.41958 6.44064 6.74264 6.83622 6.95186 7.05805 7.07790 7.34466 7.38319 7.54239 7.70416 8.01232 8.12865 8.36006 8.85918 9.52425 11.00253 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.003759 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.567512 B = 7446.023006 C = 7918.033077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.076 3.924 4 H 0.074 0.926 5 C -0.145 4.145 6 H 0.090 0.910 7 C -0.139 4.139 8 C 0.150 3.850 9 H 0.099 0.901 10 N -1.104 6.104 11 S 2.593 3.407 12 O -0.964 6.964 13 O -0.966 6.966 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.500 4.500 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.895 3.105 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.094 4.094 27 C -0.133 4.133 28 C -0.145 4.145 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.417 0.583 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.028 0.972 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.027 0.973 43 H 0.094 0.906 44 H 0.261 0.739 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.750 8.776 6.000 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.017 3.983 4 H 0.092 0.908 5 C -0.166 4.166 6 H 0.108 0.892 7 C -0.196 4.196 8 C 0.041 3.959 9 H 0.117 0.883 10 N -0.859 5.859 11 S 2.691 3.309 12 O -0.954 6.954 13 O -0.956 6.956 14 C -0.716 4.716 15 C 0.079 3.921 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.522 5.522 22 Si 0.723 3.277 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.096 4.096 27 C -0.191 4.191 28 C -0.202 4.202 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.437 8.191 4.949 20.773 hybrid contribution 0.529 0.384 1.352 1.502 sum -17.908 8.575 6.301 20.831 Atomic orbital electron populations 1.22793 0.81051 1.02768 0.99798 1.87811 1.19456 1.26574 1.94395 1.23346 0.93921 0.84881 0.96112 0.90844 1.23368 0.97624 0.97048 0.98537 0.89199 1.21803 1.02956 0.93154 1.01711 1.21698 0.98062 0.81338 0.94804 0.88278 1.55609 1.41602 1.13009 1.75691 1.05604 0.75264 0.74059 0.75945 1.93540 1.86197 1.71437 1.44230 1.93549 1.84684 1.30632 1.86770 1.30541 1.16474 1.10221 1.14335 1.17928 0.88526 0.92561 0.93039 1.22268 1.02921 0.99261 0.97641 1.22267 1.02379 0.97262 1.00196 1.20984 0.90057 1.38468 1.04408 0.92281 1.24941 0.98802 0.94889 0.95150 1.69814 1.22010 1.40256 1.20097 0.86492 0.82614 0.78089 0.80516 1.19854 1.20976 1.20985 1.22498 0.94774 0.97031 0.95283 1.21552 1.02008 0.98486 0.97021 1.21933 1.02287 0.94227 1.01766 0.94146 0.94072 0.89579 0.91236 0.92276 0.91331 0.74724 0.86311 0.86637 0.88681 0.95324 0.94552 0.94489 0.95385 0.88705 0.92840 0.92121 0.92953 0.91226 0.90411 0.92126 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.36 -3.95 7.77 -35.23 -0.27 -4.22 16 3 C 0.08 0.75 3.36 -25.92 -0.09 0.66 16 4 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 5 C -0.14 -1.62 4.18 -89.80 -0.38 -1.99 16 6 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.14 -1.22 8.53 37.16 0.32 -0.90 16 8 C 0.15 1.92 3.39 -67.12 -0.23 1.69 16 9 H 0.10 1.26 7.49 -51.93 -0.39 0.87 16 10 N -1.10 -16.50 4.92 -4.20 -0.02 -16.52 16 11 S 2.59 50.00 4.44 -107.50 -0.48 49.52 16 12 O -0.96 -20.81 15.44 -57.54 -0.89 -21.70 16 13 O -0.97 -21.22 15.70 -57.54 -0.90 -22.12 16 14 C -0.58 -11.56 5.01 37.16 0.19 -11.37 16 15 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 16 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 17 C -0.16 -4.11 7.78 37.16 0.29 -3.82 16 18 C -0.50 -13.18 8.01 -34.44 -0.28 -13.46 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 21 N -0.88 -24.29 9.35 55.43 0.52 -23.77 16 22 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.09 -0.96 1.34 -153.69 -0.21 -1.17 16 27 C -0.13 -1.43 8.45 37.16 0.31 -1.12 16 28 C -0.14 -1.19 8.82 37.16 0.33 -0.86 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.47 5.45 -51.93 -0.28 0.19 16 35 H 0.42 5.91 6.36 -34.47 -0.22 5.70 16 36 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 37 H 0.12 2.05 7.83 -51.93 -0.41 1.65 16 38 H 0.09 2.55 6.06 -51.93 -0.31 2.23 16 39 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 43 H 0.09 2.56 6.08 -51.93 -0.32 2.24 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.80 5.88 -51.93 -0.31 0.50 16 48 H 0.08 0.57 4.32 -51.93 -0.22 0.34 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -32.14 381.36 -8.29 -40.44 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.45 Total: 8.17 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 1.47 Total: -31.23 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.50 Total: -40.29 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -2.07 Total: -48.04 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 50.00 SS G_CDS: -0.48 Total: 49.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.14 -8.29 -40.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332071593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.983 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds