Wall clock time and date at job start Tue Mar 31 2020 17:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00389 * 2 1 4 4 H 1.09000 * 112.84659 * 18.79714 * 3 2 1 5 5 C 1.53784 * 113.60834 * 247.49601 * 3 2 1 6 6 H 1.08998 * 113.61674 * 25.42822 * 5 3 2 7 7 C 1.52998 * 113.61250 * 156.33376 * 5 3 2 8 8 C 1.53786 * 87.07891 * 270.87966 * 5 3 2 9 9 H 1.09004 * 113.69065 * 220.01378 * 8 5 3 10 10 N 1.46496 * 113.61511 * 89.11801 * 8 5 3 11 11 S 1.65596 * 119.99857 * 117.50012 * 10 8 5 12 12 O 1.42096 * 104.28303 * 308.92992 * 11 10 8 13 13 O 1.42104 * 104.27778 * 181.07433 * 11 10 8 14 14 C 1.81404 * 104.44960 * 65.00485 * 11 10 8 15 15 C 1.53001 * 109.47043 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.47289 * 59.99875 * 15 14 11 17 17 C 1.52999 * 109.46991 * 299.99360 * 15 14 11 18 18 C 1.50702 * 109.46657 * 179.97438 * 15 14 11 19 19 H 1.07995 * 120.00500 * 359.97438 * 18 15 14 20 20 C 1.37884 * 119.99823 * 180.27301 * 18 15 14 21 21 N 1.31510 * 119.99798 * 359.72753 * 20 18 15 22 22 Si 1.86795 * 120.00156 * 179.72658 * 20 18 15 23 23 H 1.48501 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47343 * 120.00110 * 22 20 18 25 25 H 1.48500 * 109.47046 * 240.00071 * 22 20 18 26 26 C 1.53772 * 113.61587 * 149.99759 * 3 2 1 27 27 C 1.53003 * 113.61820 * 334.56061 * 26 3 2 28 28 C 1.53007 * 113.61482 * 203.66275 * 26 3 2 29 29 H 1.08996 * 109.47116 * 300.01176 * 1 2 3 30 30 H 1.09000 * 109.46612 * 60.00537 * 1 2 3 31 31 H 1.08992 * 109.47086 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47247 * 132.58853 * 7 5 3 33 33 H 1.08998 * 109.46918 * 252.58971 * 7 5 3 34 34 H 1.09006 * 109.47166 * 12.59152 * 7 5 3 35 35 H 0.97000 * 119.99953 * 297.50603 * 10 8 5 36 36 H 1.08997 * 109.47047 * 59.99308 * 14 11 10 37 37 H 1.08994 * 109.46744 * 299.99736 * 14 11 10 38 38 H 1.08997 * 109.46891 * 179.97438 * 16 15 14 39 39 H 1.08999 * 109.46571 * 300.00008 * 16 15 14 40 40 H 1.09000 * 109.46916 * 59.99619 * 16 15 14 41 41 H 1.08994 * 109.47570 * 300.00074 * 17 15 14 42 42 H 1.09002 * 109.46858 * 60.00640 * 17 15 14 43 43 H 1.09004 * 109.47249 * 180.02562 * 17 15 14 44 44 H 0.97002 * 120.00436 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.46826 * 157.49564 * 27 26 3 46 46 H 1.08996 * 109.47157 * 277.49965 * 27 26 3 47 47 H 1.09005 * 109.46678 * 37.50051 * 27 26 3 48 48 H 1.09006 * 109.46505 * 305.91944 * 28 26 3 49 49 H 1.08994 * 109.47105 * 65.91510 * 28 26 3 50 50 H 1.08995 * 109.47052 * 185.92308 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3237 5 6 2.7536 1.6487 -1.3018 6 1 2.3928 1.0961 -2.1693 7 6 2.8737 3.1517 -1.5609 8 6 4.0063 1.0328 -0.6564 9 1 4.9224 1.5861 -0.8631 10 7 4.1437 -0.4056 -0.8975 11 16 5.4466 -0.9830 -1.7410 12 8 5.4739 -0.1973 -2.9247 13 8 5.2329 -2.3867 -1.7983 14 6 6.8734 -0.5987 -0.6888 15 6 8.1541 -1.0894 -1.3671 16 6 8.3147 -0.3914 -2.7192 17 6 8.0707 -2.6021 -1.5807 18 6 9.3395 -0.7696 -0.4932 19 1 9.1941 -0.2663 0.4512 20 6 10.6104 -1.1139 -0.9023 21 7 10.7876 -1.7263 -2.0526 22 14 12.0805 -0.7107 0.1773 23 1 11.6161 -0.0251 1.4099 24 1 12.7846 -1.9658 0.5437 25 1 13.0095 0.1798 -0.5638 26 6 3.3756 1.3718 0.7045 27 6 3.5741 0.2825 1.7604 28 6 3.7344 2.7688 1.2154 29 1 -0.3633 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.9006 3.3922 -1.8359 33 1 2.2042 3.4350 -2.3732 34 1 2.6017 3.6989 -0.6583 35 1 3.4716 -1.0198 -0.5630 36 1 6.7592 -1.0963 0.2742 37 1 6.9326 0.4789 -0.5363 38 1 9.2273 -0.7407 -3.2021 39 1 7.4573 -0.6224 -3.3513 40 1 8.3741 0.6863 -2.5669 41 1 7.9563 -3.0993 -0.6175 42 1 7.2133 -2.8330 -2.2130 43 1 8.9833 -2.9518 -2.0635 44 1 11.6816 -1.9689 -2.3403 45 1 4.6402 0.1267 1.9256 46 1 3.1030 0.5910 2.6937 47 1 3.1205 -0.6462 1.4140 48 1 3.6640 3.4843 0.3961 49 1 3.0427 3.0546 2.0078 50 1 4.7519 2.7625 1.6060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332071593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:44 Heat of formation + Delta-G solvation = -117.571897 kcal Electronic energy + Delta-G solvation = -29604.241067 eV Core-core repulsion = 25758.984806 eV Total energy + Delta-G solvation = -3845.256261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76605 -38.13229 -38.09540 -37.49875 -36.88115 -34.22308 -33.62454 -32.59032 -28.93917 -28.29134 -27.69956 -27.59819 -27.26107 -27.07414 -25.21299 -21.83693 -21.39058 -20.23357 -19.87670 -18.74898 -17.88159 -17.33089 -17.21984 -16.90732 -16.68897 -16.50287 -16.23122 -15.91463 -15.09895 -14.80966 -14.73540 -14.53833 -14.43229 -14.02051 -13.82726 -13.69340 -13.43786 -13.27445 -13.17630 -13.03329 -12.97138 -12.95523 -12.90122 -12.75969 -12.65904 -12.51204 -12.39272 -12.18717 -12.13620 -12.10945 -11.92042 -11.77221 -11.57418 -11.44531 -11.23092 -10.90046 -10.60225 -10.41808 -10.20745 -10.05740 -8.02332 -6.20918 -0.59726 1.43732 1.46570 1.56364 1.88822 2.44940 2.73460 2.85620 3.19952 3.31742 3.48421 3.57254 3.71416 3.98610 4.02292 4.12982 4.28494 4.32140 4.38760 4.48291 4.55758 4.59123 4.59454 4.66774 4.80578 4.85875 4.86237 4.89466 4.90749 4.93834 4.98217 5.02459 5.07937 5.14391 5.18014 5.18999 5.29713 5.38289 5.50003 5.50064 5.54710 5.61915 5.65214 5.96351 6.11134 6.20256 6.34291 6.38578 6.83879 7.47321 8.97931 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.003759 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.567512 B = 7446.023006 C = 7918.033077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.388 6.388 3 C 0.081 3.919 4 H 0.099 0.901 5 C -0.146 4.146 6 H 0.067 0.933 7 C -0.138 4.138 8 C 0.123 3.877 9 H 0.098 0.902 10 N -1.090 6.090 11 S 2.611 3.389 12 O -0.990 6.990 13 O -0.997 6.997 14 C -0.582 4.582 15 C 0.069 3.931 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.514 4.514 19 H 0.064 0.936 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.955 3.045 23 H -0.264 1.264 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.085 4.085 27 C -0.136 4.136 28 C -0.145 4.145 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.422 0.578 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.261 0.739 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 10.719 8.005 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.306 6.306 3 C 0.023 3.977 4 H 0.117 0.883 5 C -0.167 4.167 6 H 0.085 0.915 7 C -0.195 4.195 8 C 0.015 3.985 9 H 0.116 0.884 10 N -0.848 5.848 11 S 2.709 3.291 12 O -0.980 6.980 13 O -0.987 6.987 14 C -0.715 4.715 15 C 0.067 3.933 16 C -0.216 4.216 17 C -0.218 4.218 18 C -0.553 4.553 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.548 5.548 22 Si 0.782 3.218 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.209 1.209 26 C -0.087 4.087 27 C -0.193 4.193 28 C -0.202 4.202 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.259 0.741 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.098 0.902 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.765 10.136 6.958 23.277 hybrid contribution 0.867 -0.230 0.710 1.144 sum -18.898 9.907 7.668 22.673 Atomic orbital electron populations 1.22956 0.79636 1.03528 1.00813 1.87781 1.21123 1.27311 1.94433 1.23363 0.94237 0.85262 0.94864 0.88317 1.23422 0.96780 0.98238 0.98299 0.91490 1.21836 1.02887 0.91541 1.03231 1.22150 0.99027 0.79674 0.97628 0.88438 1.55153 1.39983 1.14447 1.75256 1.04791 0.75603 0.73055 0.75683 1.93501 1.86767 1.71789 1.45907 1.93497 1.85242 1.32678 1.87301 1.30442 1.14621 1.11702 1.14695 1.17928 0.90448 0.91942 0.92939 1.22192 1.01796 0.99562 0.98082 1.22207 1.01236 0.98239 1.00082 1.21305 0.90875 1.38369 1.04783 0.91779 1.25691 1.01398 0.94886 0.96266 1.69954 1.22412 1.40970 1.21425 0.85543 0.79417 0.77705 0.79182 1.18839 1.21056 1.20907 1.22506 0.94481 0.98068 0.93624 1.21570 1.01558 0.98310 0.97905 1.21976 1.02656 0.92858 1.02661 0.92488 0.93615 0.89114 0.91832 0.91596 0.88866 0.74062 0.84682 0.84534 0.91024 0.95109 0.93956 0.94182 0.95198 0.90980 0.92954 0.92866 0.91364 0.92370 0.89407 0.90213 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 113.37 1.23 1.59 16 2 O -0.39 -7.74 7.77 -148.98 -1.16 -8.89 16 3 C 0.08 1.40 3.36 31.12 0.10 1.51 16 4 H 0.10 1.22 7.68 -2.39 -0.02 1.20 16 5 C -0.15 -3.04 4.18 -10.27 -0.04 -3.08 16 6 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 7 C -0.14 -2.09 8.53 71.98 0.61 -1.47 16 8 C 0.12 2.99 3.39 45.52 0.15 3.14 16 9 H 0.10 2.35 7.49 -2.38 -0.02 2.33 16 10 N -1.09 -31.96 4.92 -167.19 -0.82 -32.78 16 11 S 2.61 100.65 4.44 -56.49 -0.25 100.40 16 12 O -0.99 -43.02 15.44 -127.65 -1.97 -44.99 16 13 O -1.00 -44.25 15.70 -127.65 -2.00 -46.26 16 14 C -0.58 -22.67 5.01 71.98 0.36 -22.30 16 15 C 0.07 3.41 0.52 -52.93 -0.03 3.39 16 16 C -0.16 -8.00 7.77 71.98 0.56 -7.44 16 17 C -0.16 -8.18 7.78 71.98 0.56 -7.62 16 18 C -0.51 -26.89 8.01 25.60 0.21 -26.69 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 20 C 0.02 0.89 5.15 84.66 0.44 1.33 16 21 N -0.91 -50.75 9.35 21.45 0.20 -50.54 16 22 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C -0.08 -1.53 1.34 -51.65 -0.07 -1.60 16 27 C -0.14 -2.65 8.45 71.98 0.61 -2.04 16 28 C -0.14 -1.88 8.82 71.98 0.63 -1.25 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.05 7.90 -2.39 -0.02 1.03 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.93 5.45 -2.38 -0.01 0.92 16 35 H 0.42 11.80 6.36 -96.75 -0.62 11.19 16 36 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 37 H 0.14 4.67 7.83 -2.39 -0.02 4.65 16 38 H 0.07 3.94 6.06 -2.39 -0.01 3.92 16 39 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 40 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 43 H 0.07 4.00 6.08 -2.38 -0.01 3.98 16 44 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 1.26 5.88 -2.38 -0.01 1.24 16 48 H 0.09 0.96 4.32 -2.38 -0.01 0.95 16 49 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.08 381.36 1.66 -67.42 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.31 Total: 33.95 kcal Atomic # 6 Polarization: -67.87 SS G_CDS: 5.33 Total: -62.54 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -0.62 Total: -83.33 kcal Atomic # 8 Polarization: -95.01 SS G_CDS: -5.13 Total: -100.14 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 100.65 SS G_CDS: -0.25 Total: 100.40 kcal Total: -69.08 1.66 -67.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332071593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.155 kcal (2) G-P(sol) polarization free energy of solvation -69.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds