Wall clock time and date at job start Tue Mar 31 2020 18:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47235 * 2 1 4 4 C 1.50709 * 109.46789 * 240.00241 * 2 1 3 5 5 C 1.38232 * 119.99678 * 294.92959 * 4 2 1 6 6 C 1.38240 * 119.99886 * 179.97438 * 5 4 2 7 7 C 1.38231 * 119.99587 * 0.02562 * 6 5 4 8 8 C 1.38237 * 120.00515 * 359.97161 * 7 6 5 9 9 C 1.38231 * 119.99589 * 359.97438 * 8 7 6 10 10 N 1.46499 * 109.47291 * 120.00300 * 2 1 3 11 11 C 1.46504 * 119.99585 * 53.96081 * 10 2 1 12 12 C 1.34773 * 120.00129 * 233.96622 * 10 2 1 13 13 O 1.21283 * 119.99979 * 359.97438 * 12 10 2 14 14 C 1.50697 * 119.99985 * 180.02562 * 12 10 2 15 15 N 1.46897 * 109.47299 * 179.97438 * 14 12 10 16 16 C 1.46902 * 111.00120 * 66.04282 * 15 14 12 17 17 C 1.46901 * 111.00139 * 190.00109 * 15 14 12 18 18 C 1.50701 * 109.46886 * 169.99838 * 17 15 14 19 19 O 1.21294 * 120.00460 * 359.97438 * 18 17 15 20 20 N 1.34781 * 119.99627 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99865 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99561 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00106 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99920 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46908 * 90.00433 * 25 23 21 27 27 H 1.48508 * 109.46972 * 209.99985 * 25 23 21 28 28 H 1.48498 * 109.47309 * 330.00282 * 25 23 21 29 29 H 1.08997 * 109.46901 * 300.00064 * 1 2 3 30 30 H 1.08994 * 109.46724 * 59.99459 * 1 2 3 31 31 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00462 * 0.25595 * 5 4 2 33 33 H 1.07995 * 120.00426 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.99845 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.00326 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.99736 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47135 * 87.73124 * 11 10 2 38 38 H 1.09003 * 109.46902 * 207.71977 * 11 10 2 39 39 H 1.08993 * 109.47704 * 327.72900 * 11 10 2 40 40 H 1.09008 * 109.47010 * 299.99678 * 14 12 10 41 41 H 1.08997 * 109.47403 * 59.99841 * 14 12 10 42 42 H 1.08993 * 109.47185 * 60.00373 * 16 15 14 43 43 H 1.09002 * 109.47071 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.46734 * 299.99828 * 16 15 14 45 45 H 1.09004 * 109.46562 * 289.99102 * 17 15 14 46 46 H 1.08994 * 109.47138 * 49.99732 * 17 15 14 47 47 H 0.96993 * 119.99915 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00266 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 1.7869 -2.0605 -1.3978 6 6 2.2471 -2.7120 -2.5268 7 6 2.9532 -2.0135 -3.4882 8 6 3.1986 -0.6634 -3.3211 9 6 2.7374 -0.0117 -2.1926 10 7 2.0184 -0.6907 1.1961 11 6 1.5588 -2.0489 1.4966 12 6 2.8904 -0.0765 2.0201 13 8 3.2711 1.0477 1.7711 14 6 3.3932 -0.7872 3.2501 15 7 4.3249 0.0874 3.9746 16 6 3.6315 1.2662 4.5109 17 6 5.0154 -0.6483 5.0422 18 6 6.1294 0.2010 5.5981 19 8 6.3288 1.3098 5.1487 20 7 6.9041 -0.2717 6.5946 21 6 7.9178 0.5007 7.1000 22 1 8.0958 1.4877 6.6992 23 6 8.7162 0.0137 8.1277 24 7 8.4992 -1.1870 8.6156 25 14 10.0978 1.0658 8.8157 26 1 9.5817 1.8869 9.9404 27 1 11.1917 0.1884 9.3046 28 1 10.6184 1.9585 7.7492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2317 -2.6053 -0.6486 33 1 2.0558 -3.7668 -2.6573 34 1 3.3132 -2.5226 -4.3701 35 1 3.7506 -0.1178 -4.0720 36 1 2.9295 1.0430 -2.0618 37 1 2.2046 -2.7701 0.9957 38 1 1.5953 -2.2149 2.5733 39 1 0.5348 -2.1723 1.1444 40 1 2.5509 -1.0357 3.8960 41 1 3.9080 -1.7020 2.9564 42 1 2.8478 0.9456 5.1972 43 1 4.3445 1.8968 5.0420 44 1 3.1878 1.8309 3.6909 45 1 4.3077 -0.8847 5.8368 46 1 5.4297 -1.5718 4.6379 47 1 6.7444 -1.1582 6.9542 48 1 9.0567 -1.5272 9.3328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337421284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:18 Heat of formation + Delta-G solvation = -19.371384 kcal Electronic energy + Delta-G solvation = -28371.921745 eV Core-core repulsion = 24427.772577 eV Total energy + Delta-G solvation = -3944.149167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.59194 -39.26216 -38.32144 -36.50137 -35.59374 -33.78895 -32.80505 -31.19630 -31.18911 -29.69921 -28.45832 -27.54561 -27.29223 -24.86288 -23.92872 -22.82968 -22.49053 -20.92232 -19.22427 -19.11307 -17.84904 -17.27951 -17.09409 -16.51098 -15.91296 -15.85886 -15.41631 -14.86987 -14.85608 -14.53964 -14.46988 -14.04853 -13.89020 -13.76666 -13.61644 -13.45354 -13.16093 -12.92911 -12.74798 -12.60736 -12.43238 -12.38444 -12.02109 -11.77283 -11.64461 -11.46740 -11.25510 -11.21638 -11.14568 -11.05361 -10.88676 -10.35130 -10.17557 -9.69187 -9.42719 -9.16718 -9.01704 -8.83708 -8.35938 -7.92367 -7.78781 -6.37386 -3.77654 1.04764 1.15136 2.66042 2.75718 3.21250 3.29502 3.36230 3.56514 3.95781 4.05744 4.27832 4.33162 4.53343 4.62344 4.73081 4.77322 4.84407 4.87786 4.96387 5.04511 5.13494 5.20927 5.24163 5.26835 5.29864 5.33308 5.37832 5.44322 5.60136 5.68506 5.72478 5.77090 5.79143 5.82890 6.02909 6.07371 6.19652 6.24189 6.27350 6.34755 6.43064 6.73540 6.74519 7.14432 7.34114 7.42752 7.59939 8.11537 8.23053 8.67417 9.23371 9.59460 10.12226 10.80586 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.002114 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.550064 B =13240.386918 C =13568.036584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.176 3.824 3 H 0.109 0.891 4 C -0.093 4.093 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.119 4.119 9 C -0.104 4.104 10 N -0.615 5.615 11 C 0.069 3.931 12 C 0.518 3.482 13 O -0.509 6.509 14 C 0.039 3.961 15 N -0.502 5.502 16 C 0.019 3.981 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.571 6.571 20 N -0.566 5.566 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.008 0.992 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.260 -7.281 -19.319 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.073 3.927 3 H 0.127 0.873 4 C -0.094 4.094 5 C -0.133 4.133 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.137 4.137 9 C -0.123 4.123 10 N -0.351 5.351 11 C -0.074 4.074 12 C 0.306 3.694 13 O -0.382 6.382 14 C -0.093 4.093 15 N -0.226 5.226 16 C -0.129 4.129 17 C -0.085 4.085 18 C 0.231 3.769 19 O -0.455 6.455 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.026 0.974 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.440 -5.828 -19.904 27.752 hybrid contribution 0.034 -0.734 1.136 1.353 sum -18.406 -6.563 -18.768 27.094 Atomic orbital electron populations 1.22131 0.93974 1.02499 1.02816 1.19897 0.93980 0.97422 0.81437 0.87328 1.20147 0.98803 0.94489 0.95940 1.21207 1.00219 0.94138 0.97714 1.21138 0.98737 0.99821 0.94367 1.21173 0.98931 0.94584 0.99240 1.21163 0.99874 0.94860 0.97829 1.21119 0.97073 1.00251 0.93836 1.47915 1.46211 1.16457 1.24525 1.21978 1.00197 0.83302 1.01915 1.20679 0.77744 0.86616 0.84365 1.90693 1.55595 1.18630 1.73287 1.22032 0.96367 0.96902 0.93976 1.61258 1.27951 1.06747 1.26650 1.22682 0.97474 0.93367 0.99338 1.21897 0.96426 0.97115 0.93063 1.19683 0.85485 0.88453 0.83329 1.90515 1.72205 1.21139 1.61619 1.41849 1.29087 1.17793 1.31610 1.19702 1.07327 1.00278 1.15247 0.87925 1.25244 0.99243 0.96473 0.97073 1.69612 1.40634 1.16599 1.27711 0.85864 0.80083 0.79245 0.79140 1.20471 1.20972 1.19407 0.91692 0.91156 0.92047 0.85719 0.86138 0.86212 0.85999 0.85835 0.92196 0.90665 0.90816 0.92301 0.88084 0.97401 0.88607 0.90388 0.93360 0.89370 0.77542 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.89 37.16 0.33 -0.78 16 2 C 0.18 1.72 2.95 -69.08 -0.20 1.52 16 3 H 0.11 1.30 6.67 -51.93 -0.35 0.95 16 4 C -0.09 -0.89 4.96 -104.62 -0.52 -1.41 16 5 C -0.11 -0.94 8.12 -39.58 -0.32 -1.27 16 6 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 7 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 8 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 9 C -0.10 -1.04 9.67 -39.59 -0.38 -1.42 16 10 N -0.62 -6.35 2.75 -175.26 -0.48 -6.84 16 11 C 0.07 0.46 8.17 59.85 0.49 0.94 16 12 C 0.52 7.34 7.40 -10.99 -0.08 7.26 16 13 O -0.51 -9.37 13.65 5.55 0.08 -9.30 16 14 C 0.04 0.51 3.97 -4.98 -0.02 0.49 16 15 N -0.50 -9.16 4.24 -245.82 -1.04 -10.20 16 16 C 0.02 0.35 8.85 60.07 0.53 0.88 16 17 C 0.05 0.85 5.45 -4.97 -0.03 0.82 16 18 C 0.45 10.85 7.47 -10.98 -0.08 10.77 16 19 O -0.57 -16.10 13.91 5.55 0.08 -16.03 16 20 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 25 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.36 6.08 -51.93 -0.32 0.04 16 32 H 0.13 0.79 4.97 -52.48 -0.26 0.52 16 33 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 1.17 7.95 -52.48 -0.42 0.75 16 37 H 0.06 0.37 6.97 -51.93 -0.36 0.01 16 38 H 0.07 0.42 6.36 -51.93 -0.33 0.09 16 39 H 0.07 0.35 5.54 -51.93 -0.29 0.06 16 40 H 0.06 0.64 7.39 -51.92 -0.38 0.26 16 41 H 0.10 1.15 7.90 -51.93 -0.41 0.74 16 42 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.10 2.10 5.83 -51.93 -0.30 1.80 16 44 H 0.08 1.46 5.88 -51.93 -0.31 1.16 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 47 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -35.38 384.53 -8.58 -43.96 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.92 Total: 9.44 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -1.72 Total: 5.54 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.86 Total: -55.80 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.15 Total: -25.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.38 -8.58 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337421284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.584 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds