Wall clock time and date at job start Tue Mar 31 2020 18:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47235 * 2 1 4 4 C 1.50709 * 109.46789 * 240.00241 * 2 1 3 5 5 C 1.38232 * 119.99678 * 294.92959 * 4 2 1 6 6 C 1.38240 * 119.99886 * 179.97438 * 5 4 2 7 7 C 1.38231 * 119.99587 * 0.02562 * 6 5 4 8 8 C 1.38237 * 120.00515 * 359.97161 * 7 6 5 9 9 C 1.38231 * 119.99589 * 359.97438 * 8 7 6 10 10 N 1.46499 * 109.47291 * 120.00300 * 2 1 3 11 11 C 1.46504 * 119.99585 * 53.96081 * 10 2 1 12 12 C 1.34773 * 120.00129 * 233.96622 * 10 2 1 13 13 O 1.21283 * 119.99979 * 359.97438 * 12 10 2 14 14 C 1.50697 * 119.99985 * 180.02562 * 12 10 2 15 15 N 1.46897 * 109.47299 * 179.97438 * 14 12 10 16 16 C 1.46902 * 111.00120 * 66.04282 * 15 14 12 17 17 C 1.46901 * 111.00139 * 190.00109 * 15 14 12 18 18 C 1.50701 * 109.46886 * 169.99838 * 17 15 14 19 19 O 1.21294 * 120.00460 * 359.97438 * 18 17 15 20 20 N 1.34781 * 119.99627 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99865 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99561 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00106 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99920 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46908 * 90.00433 * 25 23 21 27 27 H 1.48508 * 109.46972 * 209.99985 * 25 23 21 28 28 H 1.48498 * 109.47309 * 330.00282 * 25 23 21 29 29 H 1.08997 * 109.46901 * 300.00064 * 1 2 3 30 30 H 1.08994 * 109.46724 * 59.99459 * 1 2 3 31 31 H 1.08998 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00462 * 0.25595 * 5 4 2 33 33 H 1.07995 * 120.00426 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.99845 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.00326 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.99736 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47135 * 87.73124 * 11 10 2 38 38 H 1.09003 * 109.46902 * 207.71977 * 11 10 2 39 39 H 1.08993 * 109.47704 * 327.72900 * 11 10 2 40 40 H 1.09008 * 109.47010 * 299.99678 * 14 12 10 41 41 H 1.08997 * 109.47403 * 59.99841 * 14 12 10 42 42 H 1.08993 * 109.47185 * 60.00373 * 16 15 14 43 43 H 1.09002 * 109.47071 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.46734 * 299.99828 * 16 15 14 45 45 H 1.09004 * 109.46562 * 289.99102 * 17 15 14 46 46 H 1.08994 * 109.47138 * 49.99732 * 17 15 14 47 47 H 0.96993 * 119.99915 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00266 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 1.7869 -2.0605 -1.3978 6 6 2.2471 -2.7120 -2.5268 7 6 2.9532 -2.0135 -3.4882 8 6 3.1986 -0.6634 -3.3211 9 6 2.7374 -0.0117 -2.1926 10 7 2.0184 -0.6907 1.1961 11 6 1.5588 -2.0489 1.4966 12 6 2.8904 -0.0765 2.0201 13 8 3.2711 1.0477 1.7711 14 6 3.3932 -0.7872 3.2501 15 7 4.3249 0.0874 3.9746 16 6 3.6315 1.2662 4.5109 17 6 5.0154 -0.6483 5.0422 18 6 6.1294 0.2010 5.5981 19 8 6.3288 1.3098 5.1487 20 7 6.9041 -0.2717 6.5946 21 6 7.9178 0.5007 7.1000 22 1 8.0958 1.4877 6.6992 23 6 8.7162 0.0137 8.1277 24 7 8.4992 -1.1870 8.6156 25 14 10.0978 1.0658 8.8157 26 1 9.5817 1.8869 9.9404 27 1 11.1917 0.1884 9.3046 28 1 10.6184 1.9585 7.7492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2317 -2.6053 -0.6486 33 1 2.0558 -3.7668 -2.6573 34 1 3.3132 -2.5226 -4.3701 35 1 3.7506 -0.1178 -4.0720 36 1 2.9295 1.0430 -2.0618 37 1 2.2046 -2.7701 0.9957 38 1 1.5953 -2.2149 2.5733 39 1 0.5348 -2.1723 1.1444 40 1 2.5509 -1.0357 3.8960 41 1 3.9080 -1.7020 2.9564 42 1 2.8478 0.9456 5.1972 43 1 4.3445 1.8968 5.0420 44 1 3.1878 1.8309 3.6909 45 1 4.3077 -0.8847 5.8368 46 1 5.4297 -1.5718 4.6379 47 1 6.7444 -1.1582 6.9542 48 1 9.0567 -1.5272 9.3328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337421284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:17 Heat of formation + Delta-G solvation = -44.205661 kcal Electronic energy + Delta-G solvation = -28372.998640 eV Core-core repulsion = 24427.772577 eV Total energy + Delta-G solvation = -3945.226062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.48093 -40.38957 -39.82182 -37.62898 -36.82641 -35.82264 -33.56800 -33.26494 -31.83158 -30.42237 -29.75021 -28.84629 -27.95990 -26.75494 -24.87132 -23.77630 -23.38689 -21.77591 -20.98685 -20.08352 -19.85825 -18.26197 -17.93061 -17.76666 -17.06588 -16.90818 -16.50655 -16.42328 -16.00149 -15.89149 -15.61311 -15.34096 -15.05163 -14.99644 -14.62838 -14.32810 -14.28448 -14.17425 -13.68946 -13.47084 -13.43597 -13.18672 -13.13797 -13.05774 -12.95952 -12.79660 -12.53235 -12.46306 -12.40032 -12.36439 -12.12005 -11.88432 -11.75894 -11.45640 -10.84437 -10.23578 -9.98236 -9.82047 -9.67633 -9.65159 -9.17056 -8.45480 -5.93466 0.38679 0.50281 1.37879 1.41366 1.54135 1.64266 1.90019 2.07630 2.30489 2.81482 2.94083 3.21340 3.41816 3.54609 3.74244 3.94135 4.12777 4.16348 4.21052 4.22780 4.27983 4.29778 4.31575 4.37520 4.42161 4.54506 4.59651 4.62820 4.65539 4.68277 4.72851 4.77364 4.91926 4.97575 5.08341 5.15301 5.22402 5.24265 5.42376 5.52506 5.56722 5.62822 5.70883 5.86955 6.02516 6.09802 6.11566 6.42180 6.63525 7.15319 7.24564 7.58673 8.16307 8.71952 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.002114 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.550064 B =13240.386918 C =13568.036584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.074 0.926 4 C -0.104 4.104 5 C -0.116 4.116 6 C -0.125 4.125 7 C -0.128 4.128 8 C -0.131 4.131 9 C -0.131 4.131 10 N -0.605 5.605 11 C 0.057 3.943 12 C 0.510 3.490 13 O -0.568 6.568 14 C 0.042 3.958 15 N -0.534 5.534 16 C 0.032 3.968 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.074 0.926 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.276 1.276 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.118 0.882 47 H 0.398 0.602 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.765 -10.601 -19.374 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.071 3.929 3 H 0.092 0.908 4 C -0.106 4.106 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.149 4.149 10 N -0.339 5.339 11 C -0.084 4.084 12 C 0.299 3.701 13 O -0.446 6.446 14 C -0.088 4.088 15 N -0.259 5.259 16 C -0.116 4.116 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.092 0.908 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.202 1.202 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.144 0.856 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.136 0.864 47 H 0.232 0.768 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.995 -9.224 -19.968 29.725 hybrid contribution 0.448 0.263 1.051 1.172 sum -19.547 -8.961 -18.917 28.640 Atomic orbital electron populations 1.22071 0.91668 1.03908 1.02865 1.19887 0.95623 0.95822 0.81603 0.90764 1.20182 0.99333 0.95387 0.95651 1.21466 1.00065 0.93346 0.98465 1.21515 0.97818 1.01114 0.93815 1.21501 0.98664 0.94214 1.00174 1.21372 1.00105 0.95704 0.97749 1.21233 0.98449 1.00157 0.95088 1.47958 1.44661 1.17653 1.23603 1.22334 1.01710 0.80948 1.03420 1.20975 0.77967 0.86098 0.85057 1.90679 1.58000 1.21164 1.74721 1.22141 0.96890 0.96335 0.93466 1.61066 1.30144 1.07736 1.26946 1.22404 0.96761 0.93448 0.99005 1.21768 0.94820 0.96318 0.94079 1.20851 0.86007 0.88420 0.82122 1.90497 1.73572 1.23522 1.62750 1.41893 1.29103 1.17846 1.32272 1.19612 1.09513 1.00105 1.16894 0.90752 1.25985 1.00886 0.97661 0.96643 1.69659 1.41272 1.17284 1.27792 0.84966 0.77508 0.77838 0.78240 1.19608 1.19324 1.20152 0.92062 0.90754 0.89815 0.83362 0.83506 0.84177 0.85053 0.87080 0.91169 0.88978 0.88372 0.88651 0.85569 0.94767 0.92940 0.91293 0.90341 0.86384 0.76831 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.89 71.98 0.64 -1.24 16 2 C 0.17 3.36 2.95 44.25 0.13 3.49 16 3 H 0.07 1.95 6.67 -2.39 -0.02 1.93 16 4 C -0.10 -1.95 4.96 -19.86 -0.10 -2.05 16 5 C -0.12 -1.60 8.12 22.27 0.18 -1.42 16 6 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 7 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 8 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 9 C -0.13 -2.72 9.67 22.27 0.22 -2.50 16 10 N -0.61 -11.47 2.75 -826.77 -2.28 -13.75 16 11 C 0.06 0.52 8.17 127.77 1.04 1.56 16 12 C 0.51 14.10 7.40 87.66 0.65 14.75 16 13 O -0.57 -21.90 13.65 -3.04 -0.04 -21.94 16 14 C 0.04 1.00 3.97 85.56 0.34 1.34 16 15 N -0.53 -19.00 4.24 -931.65 -3.95 -22.94 16 16 C 0.03 1.19 8.85 127.69 1.13 2.32 16 17 C 0.06 2.12 5.45 85.56 0.47 2.59 16 18 C 0.44 21.69 7.47 87.66 0.66 22.35 16 19 O -0.62 -36.38 13.91 -3.07 -0.04 -36.42 16 20 N -0.57 -29.96 5.29 -306.97 -1.62 -31.58 16 21 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 22 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 25 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.68 6.08 -2.39 -0.01 0.67 16 32 H 0.15 1.24 4.97 -2.91 -0.01 1.22 16 33 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.11 2.43 7.95 -2.91 -0.02 2.41 16 37 H 0.07 0.56 6.97 -2.39 -0.02 0.54 16 38 H 0.09 0.57 6.36 -2.39 -0.02 0.56 16 39 H 0.10 0.44 5.54 -2.39 -0.01 0.43 16 40 H 0.10 1.62 7.39 -2.38 -0.02 1.60 16 41 H 0.13 2.37 7.90 -2.39 -0.02 2.35 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 2.42 5.83 -2.39 -0.01 2.40 16 44 H 0.07 2.70 5.88 -2.39 -0.01 2.69 16 45 H 0.08 2.29 8.12 -2.39 -0.02 2.27 16 46 H 0.12 3.42 7.93 -2.39 -0.02 3.40 16 47 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 48 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -81.87 384.53 1.94 -79.93 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.25 Total: 32.90 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 7.30 Total: 17.43 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -7.56 Total: -117.82 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -0.08 Total: -58.37 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -81.87 1.94 -79.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337421284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.726 kcal (2) G-P(sol) polarization free energy of solvation -81.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds