Wall clock time and date at job start Tue Mar 31 2020 18:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.50689 * 2 1 4 4 C 1.53101 * 109.50632 * 239.91789 * 2 1 3 5 5 N 1.47010 * 109.25996 * 183.17455 * 4 2 1 6 6 C 1.38998 * 111.00292 * 182.38890 * 5 4 2 7 7 C 1.39141 * 119.70976 * 180.27159 * 6 5 4 8 8 C 1.38293 * 119.09781 * 180.23071 * 7 6 5 9 9 C 1.38881 * 118.50529 * 359.50605 * 8 7 6 10 10 C 1.50701 * 120.33462 * 180.27554 * 9 8 7 11 11 N 1.46505 * 109.47447 * 90.00115 * 10 9 8 12 12 C 1.34771 * 120.00503 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99554 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00360 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.47111 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.46794 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00662 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99969 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99886 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47062 * 90.00640 * 20 18 16 22 22 H 1.48507 * 109.46709 * 209.99879 * 20 18 16 23 23 H 1.48493 * 109.47190 * 329.99883 * 20 18 16 24 24 C 1.38023 * 119.33177 * 0.25125 * 9 8 7 25 25 N 1.31974 * 120.85239 * 0.02562 * 24 9 8 26 26 C 1.47020 * 110.75508 * 58.61186 * 5 4 2 27 27 C 1.53102 * 109.25655 * 301.38890 * 26 5 4 28 28 O 1.43010 * 109.26072 * 56.84405 * 27 26 5 29 29 H 1.08999 * 109.47534 * 180.08635 * 1 2 3 30 30 H 1.09003 * 109.46648 * 300.08423 * 1 2 3 31 31 H 1.09003 * 109.47236 * 60.08237 * 1 2 3 32 32 H 1.08998 * 109.50642 * 63.23906 * 4 2 1 33 33 H 1.09003 * 109.53709 * 303.12446 * 4 2 1 34 34 H 1.08004 * 120.44802 * 0.02562 * 7 6 5 35 35 H 1.08002 * 120.75002 * 179.78535 * 8 7 6 36 36 H 1.08999 * 109.47028 * 209.99817 * 10 9 8 37 37 H 1.08991 * 109.47386 * 329.99760 * 10 9 8 38 38 H 0.97004 * 119.99126 * 0.02562 * 11 10 9 39 39 H 1.08999 * 109.46969 * 300.00184 * 14 12 11 40 40 H 1.09000 * 109.46805 * 59.99918 * 14 12 11 41 41 H 1.08999 * 109.47289 * 299.99908 * 15 14 12 42 42 H 1.09000 * 109.46910 * 60.00350 * 15 14 12 43 43 H 0.96998 * 120.00445 * 179.97438 * 19 18 16 44 44 H 1.08002 * 119.57270 * 180.02562 * 24 9 8 45 45 H 1.09001 * 109.50259 * 61.31947 * 26 5 4 46 46 H 1.09001 * 109.50517 * 181.45067 * 26 5 4 47 47 H 1.09000 * 109.49989 * 296.90731 * 27 26 5 48 48 H 1.09004 * 109.54033 * 176.80438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2488 5 7 3.5093 -0.7871 -1.2054 6 6 4.0158 -1.3907 -2.3504 7 6 5.3904 -1.5498 -2.4955 8 6 5.8809 -2.1477 -3.6421 9 6 4.9764 -2.5775 -4.6043 10 6 5.4654 -3.2399 -5.8665 11 7 5.5513 -4.6874 -5.6568 12 6 5.9677 -5.4896 -6.6564 13 8 6.2719 -5.0133 -7.7295 14 6 6.0566 -6.9784 -6.4405 15 6 6.5529 -7.6509 -7.7220 16 6 6.6424 -9.1396 -7.5058 17 1 6.3719 -9.5638 -6.5501 18 6 7.0686 -9.9604 -8.5284 19 7 7.3975 -9.4440 -9.6924 20 14 7.1788 -11.8058 -8.2606 21 1 5.8856 -12.4372 -8.6267 22 1 8.2608 -12.3654 -9.1101 23 1 7.4778 -12.0818 -6.8325 24 6 3.6251 -2.3923 -4.3927 25 7 3.1857 -1.8134 -3.2912 26 6 3.9649 -1.4869 0.0046 27 6 3.4343 -0.7559 1.2408 28 8 2.0084 -0.6761 1.1659 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3633 0.5152 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.7267 -0.1789 -2.1391 33 1 1.6338 -1.7340 -1.2770 34 1 6.0654 -1.2081 -1.7247 35 1 6.9432 -2.2815 -3.7839 36 1 4.7697 -3.0313 -6.6793 37 1 6.4507 -2.8509 -6.1228 38 1 5.3076 -5.0683 -4.7986 39 1 6.7529 -7.1868 -5.6281 40 1 5.0715 -7.3677 -6.1835 41 1 5.8570 -7.4426 -8.5346 42 1 7.5382 -7.2616 -7.9785 43 1 7.6977 -10.0213 -10.4117 44 1 2.9183 -2.7255 -5.1383 45 1 3.5881 -2.5097 -0.0030 46 1 5.0545 -1.4999 0.0290 47 1 3.8538 0.2495 1.2768 48 1 3.7217 -1.3026 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360007588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:13 Heat of formation + Delta-G solvation = -69.284308 kcal Electronic energy + Delta-G solvation = -27405.896515 eV Core-core repulsion = 23459.582961 eV Total energy + Delta-G solvation = -3946.313554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98095 -40.74145 -40.13103 -37.28574 -35.80975 -35.49291 -34.02650 -33.44598 -32.98819 -31.85480 -29.70047 -28.24609 -27.25899 -26.14668 -24.53105 -23.90888 -23.43058 -22.41026 -21.47844 -21.21464 -18.86555 -18.65690 -17.99417 -17.60900 -17.28595 -17.13330 -16.64014 -16.52275 -16.41481 -16.16709 -15.81809 -15.65839 -15.56938 -14.93202 -14.73366 -14.57483 -14.28034 -14.11432 -14.08731 -13.67682 -13.57670 -13.22854 -13.20472 -12.99673 -12.81632 -12.73620 -12.52432 -12.45731 -12.19771 -11.90706 -11.63972 -11.63021 -11.31587 -11.25730 -10.96324 -10.72656 -10.57954 -10.56054 -10.48049 -10.08010 -9.20742 -8.17407 -6.31274 -0.05808 0.24925 1.42439 1.44986 1.55872 1.72619 2.14461 2.37472 2.46613 2.75938 2.82455 3.15539 3.31587 3.63324 3.72727 3.83433 3.91438 3.94028 4.02693 4.06487 4.10561 4.10843 4.18738 4.37375 4.48757 4.51380 4.55172 4.57850 4.68873 4.71648 4.75793 4.76393 4.78739 4.89745 4.92515 5.03127 5.09798 5.21375 5.24471 5.38631 5.43604 5.52061 5.52784 5.64981 5.86635 5.99317 6.15820 6.18639 6.58954 6.87334 6.89492 7.33982 7.39023 8.95094 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.001731 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.702401 B =16171.082811 C =16632.828699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.043 3.957 5 N -0.480 5.480 6 C 0.299 3.701 7 C -0.181 4.181 8 C -0.031 4.031 9 C -0.178 4.178 10 C 0.171 3.829 11 N -0.715 5.715 12 C 0.514 3.486 13 O -0.587 6.587 14 C -0.120 4.120 15 C 0.041 3.959 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.973 3.027 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.256 1.256 24 C 0.139 3.861 25 N -0.538 5.538 26 C 0.021 3.979 27 C 0.063 3.937 28 O -0.399 6.399 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.104 0.896 40 H 0.103 0.897 41 H -0.017 1.017 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.165 0.835 45 H 0.044 0.956 46 H 0.116 0.884 47 H 0.071 0.929 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 22.026 26.411 35.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.089 0.911 4 C -0.084 4.084 5 N -0.198 5.198 6 C 0.067 3.933 7 C -0.203 4.203 8 C -0.058 4.058 9 C -0.182 4.182 10 C 0.048 3.952 11 N -0.369 5.369 12 C 0.302 3.698 13 O -0.467 6.467 14 C -0.159 4.159 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.797 3.203 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.180 1.180 24 C -0.019 4.019 25 N -0.252 5.252 26 C -0.105 4.105 27 C -0.014 4.014 28 O -0.319 6.319 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.182 0.818 45 H 0.062 0.938 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.333 22.890 25.849 36.041 hybrid contribution 0.835 -1.645 -0.792 2.008 sum -9.499 21.245 25.057 34.197 Atomic orbital electron populations 1.21746 0.91426 1.03063 1.03704 1.22322 0.96135 0.95381 0.83258 0.91057 1.22631 0.85100 1.00867 0.99825 1.59458 1.11545 1.47728 1.01030 1.20162 0.90932 0.90605 0.91554 1.21757 0.94131 1.03828 1.00612 1.21665 1.01167 0.91929 0.90993 1.20596 0.94950 1.04828 0.97813 1.19973 1.01586 0.79490 0.94166 1.45998 1.68328 1.06722 1.15805 1.21285 0.75045 0.90213 0.83254 1.90666 1.50491 1.77701 1.27813 1.21635 1.04165 0.89032 1.01108 1.18700 0.94390 0.94368 0.92223 1.21723 1.44486 0.92778 0.99139 0.90674 1.26132 0.94853 1.04702 0.94776 1.70174 1.45869 1.37406 1.04229 0.85328 0.77818 0.78340 0.78790 1.19798 1.21172 1.17953 1.22655 0.93894 0.92090 0.93220 1.67643 1.39793 1.13808 1.03958 1.23098 1.03114 0.96002 0.88268 1.22861 0.80157 1.01215 0.97170 1.88001 1.22153 1.78574 1.43161 0.92369 0.90832 0.89538 0.89360 0.93832 0.82141 0.82488 0.91265 0.90980 0.75043 0.87779 0.87929 0.99887 0.99770 0.92879 0.81798 0.93775 0.86570 0.91101 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.57 71.98 0.69 -0.82 16 2 C 0.09 1.17 3.42 30.63 0.10 1.27 16 3 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.04 0.70 4.10 86.32 0.35 1.05 16 5 N -0.48 -7.47 4.75 -700.88 -3.33 -10.80 16 6 C 0.30 5.35 6.41 133.07 0.85 6.20 16 7 C -0.18 -2.55 9.22 22.50 0.21 -2.34 16 8 C -0.03 -0.46 9.85 22.44 0.22 -0.24 16 9 C -0.18 -3.17 5.27 -19.76 -0.10 -3.27 16 10 C 0.17 3.85 5.82 85.63 0.50 4.34 16 11 N -0.72 -18.22 5.55 -466.79 -2.59 -20.81 16 12 C 0.51 19.22 7.83 87.66 0.69 19.90 16 13 O -0.59 -28.15 15.98 -3.04 -0.05 -28.20 16 14 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 15 C 0.04 2.27 4.26 29.85 0.13 2.39 16 16 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 17 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 18 C -0.01 -0.42 5.46 84.66 0.46 0.05 16 19 N -0.94 -59.41 13.29 21.45 0.28 -59.13 16 20 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 C 0.14 2.64 10.85 84.62 0.92 3.55 16 25 N -0.54 -11.04 8.71 -193.26 -1.68 -12.73 16 26 C 0.02 0.24 5.39 86.31 0.47 0.70 16 27 C 0.06 0.61 7.01 72.02 0.50 1.11 16 28 O -0.40 -6.08 10.47 -148.98 -1.56 -7.64 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.09 1.53 7.86 -2.39 -0.02 1.51 16 33 H 0.04 0.85 8.03 -2.39 -0.02 0.83 16 34 H 0.16 1.43 7.17 -2.91 -0.02 1.41 16 35 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 37 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 38 H 0.41 8.10 8.46 -92.71 -0.78 7.32 16 39 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 40 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 41 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 42 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.12 0.80 6.81 -2.39 -0.02 0.78 16 47 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -79.42 394.98 -0.34 -79.76 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.17 Total: 14.54 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 6.39 Total: -1.28 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -7.32 Total: -103.47 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.61 Total: -35.84 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -79.42 -0.34 -79.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360007588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.478 kcal (2) G-P(sol) polarization free energy of solvation -79.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds