Wall clock time and date at job start Tue Mar 31 2020 17:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.29534 * 2 1 4 4 C 1.54387 * 110.32381 * 237.76180 * 2 1 3 5 5 N 1.48561 * 104.59516 * 217.25465 * 4 2 1 6 6 C 1.46893 * 110.99713 * 159.04276 * 5 4 2 7 7 C 1.48717 * 104.28661 * 39.42631 * 5 4 2 8 8 C 1.54261 * 110.32489 * 122.12880 * 2 1 3 9 9 H 1.08994 * 110.32550 * 237.89463 * 8 2 1 10 10 C 1.50704 * 110.31952 * 359.97438 * 8 2 1 11 11 O 1.21282 * 120.00172 * 87.33718 * 10 8 2 12 12 N 1.34777 * 119.99766 * 267.33320 * 10 8 2 13 13 C 1.39585 * 119.99603 * 180.02562 * 12 10 8 14 14 N 1.32269 * 119.72955 * 0.02562 * 13 12 10 15 15 C 1.31951 * 121.69265 * 179.97438 * 14 13 12 16 16 C 1.38085 * 120.95587 * 0.02562 * 15 14 13 17 17 C 1.38777 * 119.35355 * 359.97144 * 16 15 14 18 18 C 1.38800 * 118.44873 * 359.97438 * 17 16 15 19 19 O 1.35981 * 120.50009 * 180.02562 * 18 17 16 20 20 C 1.42895 * 116.99940 * 0.03793 * 19 18 17 21 21 C 1.52992 * 109.47090 * 180.02562 * 20 19 18 22 22 C 1.50700 * 109.47405 * 180.02562 * 21 20 19 23 23 H 1.08008 * 120.00014 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00720 * 180.02562 * 22 21 20 25 25 N 1.31513 * 119.99411 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00374 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47110 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47116 * 119.99842 * 26 24 22 29 29 H 1.48496 * 109.46812 * 239.99618 * 26 24 22 30 30 H 1.09003 * 109.47204 * 296.99127 * 1 2 3 31 31 H 1.09005 * 109.46789 * 56.98010 * 1 2 3 32 32 H 1.08998 * 109.47386 * 176.98268 * 1 2 3 33 33 H 1.09001 * 110.40949 * 336.03525 * 4 2 1 34 34 H 1.09001 * 110.40823 * 98.47331 * 4 2 1 35 35 H 1.09001 * 109.47381 * 59.99881 * 6 5 4 36 36 H 1.09004 * 109.47081 * 179.97438 * 6 5 4 37 37 H 1.09005 * 109.47330 * 299.99840 * 6 5 4 38 38 H 1.09000 * 110.50606 * 201.84855 * 7 5 4 39 39 H 1.09005 * 110.39110 * 79.35989 * 7 5 4 40 40 H 0.97000 * 120.00104 * 0.02562 * 12 10 8 41 41 H 1.08002 * 119.52503 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.32459 * 179.70472 * 16 15 14 43 43 H 1.08007 * 120.77888 * 179.97438 * 17 16 15 44 44 H 1.09007 * 109.47423 * 300.00549 * 20 19 18 45 45 H 1.09004 * 109.46826 * 60.00350 * 20 19 18 46 46 H 1.08997 * 109.47683 * 300.00195 * 21 20 19 47 47 H 1.09004 * 109.47166 * 60.00354 * 21 20 19 48 48 H 0.97003 * 119.99849 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0662 -0.7723 -1.2246 5 7 3.2693 -1.4837 -0.7211 6 6 3.6067 -2.6233 -1.5843 7 6 2.8821 -1.9416 0.6398 8 6 2.0658 -0.7693 1.2250 9 1 2.7067 -0.1246 1.8263 10 6 0.9223 -1.2908 2.0567 11 8 0.4299 -2.3696 1.8021 12 7 0.4469 -0.5584 3.0833 13 6 -0.6119 -1.0418 3.8539 14 7 -1.1442 -2.2194 3.5721 15 6 -2.1455 -2.7136 4.2751 16 6 -2.6796 -2.0142 5.3392 17 6 -2.1527 -0.7742 5.6715 18 6 -1.0990 -0.2794 4.9155 19 8 -0.5506 0.9308 5.2047 20 6 -1.1077 1.6486 6.3075 21 6 -0.3675 2.9767 6.4778 22 6 -0.9546 3.7334 7.6413 23 1 -1.7741 3.3097 8.2030 24 6 -0.4464 4.9673 7.9883 25 7 0.5511 5.4835 7.3042 26 14 -1.1737 5.9049 9.4310 27 1 -2.2775 5.1127 10.0303 28 1 -0.1204 6.1380 10.4514 29 1 -1.7018 7.2096 8.9577 30 1 -0.3634 0.4664 0.9157 31 1 -0.3633 0.5600 -0.8617 32 1 -0.3634 -1.0262 -0.0541 33 1 1.3228 -1.4864 -1.5790 34 1 2.3394 -0.0799 -2.0208 35 1 3.8086 -2.2667 -2.5944 36 1 4.4913 -3.1260 -1.1932 37 1 2.7708 -3.3226 -1.6062 38 1 3.7683 -2.1280 1.2465 39 1 2.2672 -2.8395 0.5778 40 1 0.8404 0.3045 3.2867 41 1 -2.5539 -3.6788 4.0140 42 1 -3.5023 -2.4263 5.9047 43 1 -2.5530 -0.2072 6.4990 44 1 -2.1635 1.8430 6.1185 45 1 -1.0045 1.0556 7.2163 46 1 0.6883 2.7827 6.6667 47 1 -0.4711 3.5695 5.5690 48 1 0.9089 6.3514 7.5485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362748236.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:19 Heat of formation + Delta-G solvation = -26.433086 kcal Electronic energy + Delta-G solvation = -28735.426159 eV Core-core repulsion = 24790.970773 eV Total energy + Delta-G solvation = -3944.455386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14138 -40.10275 -38.24699 -37.66497 -34.82332 -33.67239 -33.48513 -31.66220 -30.72254 -30.19491 -29.04749 -27.26851 -25.49703 -25.20968 -23.72934 -22.87516 -21.82363 -21.33048 -20.77463 -19.57130 -18.23866 -17.46656 -17.30650 -16.50323 -16.18627 -15.86259 -15.76537 -15.22772 -14.95642 -14.83391 -14.72450 -14.58224 -14.05585 -13.97413 -13.67600 -13.56236 -12.89446 -12.76312 -12.63726 -12.42632 -12.42078 -12.04779 -11.94317 -11.81131 -11.70891 -11.34683 -11.07384 -11.06182 -11.02514 -10.91788 -10.68943 -10.63364 -10.16474 -10.06981 -9.78639 -9.40900 -9.23315 -9.03237 -8.77470 -8.53814 -7.68162 -6.19231 -4.24138 1.18236 1.42754 2.66289 2.83576 3.20878 3.28062 3.31016 3.51173 3.77461 3.98211 4.22808 4.32700 4.35280 4.41310 4.68605 4.85962 4.93172 5.01471 5.05357 5.10443 5.17815 5.17965 5.21363 5.27204 5.30911 5.42056 5.44448 5.52518 5.59940 5.61021 5.72903 5.79587 5.83913 5.88063 5.91820 6.04086 6.10851 6.16716 6.33823 6.48718 6.52435 6.60992 6.70097 7.24833 7.33104 7.51138 7.62405 7.83740 8.04515 8.13043 8.33352 8.81258 9.40966 10.92227 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.002695 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.349938 B =10387.460483 C =12097.277811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.079 4.079 3 H 0.093 0.907 4 C 0.037 3.963 5 N -0.515 5.515 6 C 0.013 3.987 7 C 0.045 3.955 8 C -0.113 4.113 9 H 0.104 0.896 10 C 0.520 3.480 11 O -0.482 6.482 12 N -0.651 5.651 13 C 0.328 3.672 14 N -0.443 5.443 15 C 0.074 3.926 16 C -0.160 4.160 17 C -0.148 4.148 18 C 0.067 3.933 19 O -0.315 6.315 20 C 0.066 3.934 21 C 0.026 3.974 22 C -0.528 4.528 23 H 0.059 0.941 24 C 0.061 3.939 25 N -0.888 5.888 26 Si 0.899 3.101 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.424 0.576 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.145 0.855 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -14.643 -13.805 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.099 4.099 3 H 0.111 0.889 4 C -0.091 4.091 5 N -0.239 5.239 6 C -0.135 4.135 7 C -0.083 4.083 8 C -0.135 4.135 9 H 0.122 0.878 10 C 0.305 3.695 11 O -0.352 6.352 12 N -0.299 5.299 13 C 0.095 3.905 14 N -0.158 5.158 15 C -0.083 4.083 16 C -0.181 4.181 17 C -0.175 4.175 18 C 0.016 3.984 19 O -0.228 6.228 20 C -0.008 4.008 21 C -0.011 4.011 22 C -0.566 4.566 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.526 5.526 26 Si 0.726 3.274 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.262 0.738 41 H 0.173 0.827 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.598 -15.292 -14.852 21.377 hybrid contribution -1.404 1.012 1.879 2.555 sum 0.194 -14.281 -12.972 19.294 Atomic orbital electron populations 1.22065 0.94083 1.02988 1.02577 1.21815 0.96038 0.99730 0.92299 0.88897 1.23232 0.91231 0.97464 0.97188 1.65413 1.33144 1.23073 1.02255 1.22504 1.00757 0.92545 0.97727 1.23105 0.98686 0.96176 0.90382 1.22166 0.95458 0.98918 0.96967 0.87812 1.20481 0.84318 0.84868 0.79799 1.90765 1.57502 1.20125 1.66781 1.43580 1.32686 1.23249 1.30349 1.17828 0.91631 0.90633 0.90392 1.67613 1.10572 1.09397 1.28257 1.22400 0.93139 1.00007 0.92730 1.21889 1.01749 0.95211 0.99257 1.21615 0.96997 0.97586 1.01313 1.19616 0.95163 0.88225 0.95411 1.86102 1.58114 1.26747 1.51841 1.23396 0.98108 0.94478 0.84787 1.19129 0.96277 0.87737 0.97929 1.20980 1.18269 1.03078 1.14276 0.92306 1.24981 0.94885 0.97365 0.96889 1.69972 1.24841 1.18007 1.39799 0.86432 0.79101 0.79787 0.82089 1.19639 1.20786 1.20795 0.91938 0.91905 0.91628 0.93249 0.89759 0.91235 0.91149 0.95086 0.89591 0.91392 0.73775 0.82696 0.84823 0.83756 0.92964 0.92950 0.95332 0.95339 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 7.95 37.16 0.30 -1.43 16 2 C -0.08 -0.78 3.65 -89.24 -0.33 -1.11 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.04 0.34 6.04 -2.18 -0.01 0.33 16 5 N -0.52 -5.12 5.66 -238.09 -1.35 -6.46 16 6 C 0.01 0.11 9.53 60.06 0.57 0.68 16 7 C 0.04 0.48 6.01 -2.10 -0.01 0.46 16 8 C -0.11 -1.22 3.44 -90.39 -0.31 -1.53 16 9 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 10 C 0.52 7.15 4.75 -10.98 -0.05 7.10 16 11 O -0.48 -8.04 13.24 5.56 0.07 -7.97 16 12 N -0.65 -9.28 4.92 -11.29 -0.06 -9.33 16 13 C 0.33 5.31 7.45 -154.43 -1.15 4.16 16 14 N -0.44 -7.24 7.87 -12.22 -0.10 -7.33 16 15 C 0.07 0.99 11.17 -17.56 -0.20 0.79 16 16 C -0.16 -1.97 10.10 -39.44 -0.40 -2.37 16 17 C -0.15 -2.14 9.14 -39.17 -0.36 -2.49 16 18 C 0.07 1.10 6.72 -38.91 -0.26 0.84 16 19 O -0.32 -5.72 9.38 -19.68 -0.18 -5.91 16 20 C 0.07 1.29 4.70 37.15 0.17 1.47 16 21 C 0.03 0.64 5.34 -27.89 -0.15 0.50 16 22 C -0.53 -14.01 9.11 -34.44 -0.31 -14.32 16 23 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 26 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.06 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.83 7.02 -51.93 -0.36 0.47 16 33 H 0.05 0.48 7.64 -51.93 -0.40 0.09 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.03 0.26 7.98 -51.93 -0.41 -0.15 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.84 6.64 -51.93 -0.34 0.49 16 40 H 0.42 5.48 8.05 -40.82 -0.33 5.15 16 41 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.14 1.93 6.44 -52.48 -0.34 1.59 16 44 H 0.05 0.97 7.70 -51.92 -0.40 0.57 16 45 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -31.52 387.53 -10.20 -41.72 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.55 Total: 3.90 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.60 Total: -5.34 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.76 Total: -47.80 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.11 Total: -13.87 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.52 -10.20 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362748236.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.287 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds