Wall clock time and date at job start Tue Mar 31 2020 17:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.87214 * 2 1 4 4 C 1.54910 * 111.02403 * 123.86226 * 2 1 3 5 5 N 1.47849 * 104.79252 * 155.18154 * 4 2 1 6 6 C 1.46906 * 110.99749 * 213.63835 * 5 4 2 7 7 C 1.47446 * 108.56830 * 335.90237 * 5 4 2 8 8 C 1.54319 * 107.23045 * 0.99535 * 7 5 4 9 9 H 1.09006 * 110.70223 * 263.89720 * 8 7 5 10 10 C 1.50699 * 110.70373 * 140.84201 * 8 7 5 11 11 O 1.21283 * 119.99866 * 241.45425 * 10 8 7 12 12 N 1.34780 * 120.00255 * 61.44938 * 10 8 7 13 13 C 1.39581 * 119.99977 * 180.02562 * 12 10 8 14 14 N 1.32274 * 119.72531 * 359.97438 * 13 12 10 15 15 C 1.31954 * 121.68663 * 179.97438 * 14 13 12 16 16 C 1.38084 * 120.95933 * 0.02562 * 15 14 13 17 17 C 1.38776 * 119.35193 * 0.02562 * 16 15 14 18 18 C 1.38806 * 118.44840 * 359.74309 * 17 16 15 19 19 O 1.35969 * 120.49918 * 180.24484 * 18 17 16 20 20 C 1.42907 * 117.00091 * 0.25438 * 19 18 17 21 21 C 1.52994 * 109.47044 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.47019 * 180.02562 * 21 20 19 23 23 H 1.08002 * 120.00241 * 359.97438 * 22 21 20 24 24 C 1.37874 * 120.00049 * 179.97438 * 22 21 20 25 25 N 1.31525 * 120.00273 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00172 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47071 * 90.00047 * 26 24 22 28 28 H 1.48501 * 109.47367 * 209.99809 * 26 24 22 29 29 H 1.48494 * 109.47319 * 330.00060 * 26 24 22 30 30 H 1.09007 * 109.46521 * 183.84844 * 1 2 3 31 31 H 1.08995 * 109.46986 * 303.84698 * 1 2 3 32 32 H 1.09000 * 109.46812 * 63.84876 * 1 2 3 33 33 H 1.08997 * 110.37234 * 36.35246 * 4 2 1 34 34 H 1.09004 * 110.37316 * 274.00804 * 4 2 1 35 35 H 1.08992 * 109.47459 * 180.71454 * 6 5 4 36 36 H 1.09004 * 109.47040 * 300.71605 * 6 5 4 37 37 H 1.09000 * 109.47033 * 60.71557 * 6 5 4 38 38 H 1.08995 * 109.88635 * 120.39666 * 7 5 4 39 39 H 1.09003 * 109.88855 * 241.42416 * 7 5 4 40 40 H 0.97002 * 119.99633 * 359.97438 * 12 10 8 41 41 H 1.08002 * 119.51820 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.32328 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.77439 * 179.97438 * 17 16 15 44 44 H 1.08993 * 109.47190 * 300.00051 * 20 19 18 45 45 H 1.08997 * 109.46782 * 60.00008 * 20 19 18 46 46 H 1.09000 * 109.47768 * 299.99714 * 21 20 19 47 47 H 1.09001 * 109.47670 * 60.00253 * 21 20 19 48 48 H 0.96994 * 120.00117 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0186 0.0000 4 6 2.0858 -0.8057 1.2007 5 7 3.4323 -1.2409 0.7724 6 6 3.7631 -2.5577 1.3335 7 6 3.4697 -1.2699 -0.7013 8 6 2.0858 -0.8067 -1.2029 9 1 1.4480 -1.6636 -1.4200 10 6 2.2267 0.0720 -2.4191 11 8 1.8365 1.2199 -2.3863 12 7 2.7864 -0.4177 -3.5431 13 6 2.9174 0.3964 -4.6694 14 7 2.4898 1.6474 -4.6277 15 6 2.5948 2.4509 -5.6692 16 6 3.1587 2.0121 -6.8508 17 6 3.6202 0.7064 -6.9407 18 6 3.5014 -0.1149 -5.8280 19 8 3.9443 -1.3998 -5.8684 20 6 4.5314 -1.8456 -7.0927 21 6 4.9668 -3.3051 -6.9477 22 6 5.5866 -3.7749 -8.2386 23 1 5.6620 -3.1001 -9.0785 24 6 6.0574 -5.0662 -8.3473 25 7 6.5978 -5.4764 -9.4741 26 14 5.9277 -6.2331 -6.8945 27 1 4.6360 -6.9629 -6.9595 28 1 7.0487 -7.2061 -6.9395 29 1 5.9953 -5.4583 -5.6296 30 1 -0.3632 -1.0254 0.0690 31 1 -0.3633 0.5724 0.8535 32 1 -0.3633 0.4529 -0.9225 33 1 1.4537 -1.6705 1.4025 34 1 2.1552 -0.1709 2.0841 35 1 4.7635 -2.8482 1.0131 36 1 3.7303 -2.5076 2.4219 37 1 3.0408 -3.2944 0.9817 38 1 4.2420 -0.5928 -1.0659 39 1 3.6720 -2.2836 -1.0472 40 1 3.0989 -1.3356 -3.5691 41 1 2.2336 3.4661 -5.5966 42 1 3.2398 2.6786 -7.6967 43 1 4.0648 0.3391 -7.8538 44 1 3.8011 -1.7621 -7.8974 45 1 5.3998 -1.2290 -7.3247 46 1 5.6974 -3.3882 -6.1431 47 1 4.0987 -3.9220 -6.7155 48 1 6.9294 -6.3848 -9.5504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362748238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:24 Heat of formation + Delta-G solvation = -47.259183 kcal Electronic energy + Delta-G solvation = -28654.153989 eV Core-core repulsion = 24708.795516 eV Total energy + Delta-G solvation = -3945.358473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.17646 -41.06862 -39.48387 -38.91582 -36.05118 -35.40422 -34.25067 -33.08773 -32.64734 -31.50136 -30.08184 -27.97793 -27.32506 -26.23141 -24.86386 -24.01815 -22.90976 -22.29935 -21.62391 -20.90819 -19.70989 -19.18428 -18.43783 -18.20955 -17.36715 -17.19263 -16.78276 -16.37281 -16.21060 -15.95622 -15.81472 -15.28493 -15.27719 -14.90874 -14.85791 -14.72462 -14.59811 -14.14086 -13.95042 -13.76287 -13.37420 -13.35914 -13.18413 -12.87315 -12.80186 -12.71268 -12.47083 -12.20240 -12.07903 -11.89993 -11.83197 -11.73576 -11.68337 -11.64949 -11.47679 -11.28051 -10.80692 -10.43922 -10.19216 -9.35258 -8.89129 -8.33716 -6.40723 0.06140 0.25881 1.37501 1.39388 1.50860 1.58911 1.77957 2.07763 2.34077 2.84788 2.94263 3.01971 3.25359 3.35606 3.58110 3.70493 3.82579 3.93559 4.08408 4.12370 4.21347 4.23191 4.28238 4.29647 4.41822 4.44067 4.48281 4.55590 4.66169 4.66448 4.77359 4.81158 4.91399 4.93054 5.03175 5.05160 5.07837 5.12695 5.23156 5.25518 5.32103 5.34495 5.47919 5.57806 5.87554 6.05586 6.16011 6.17072 6.26124 6.66072 6.90438 7.23312 7.24666 8.81960 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.003323 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.782804 B = 8424.167116 C =11041.150052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 H 0.072 0.928 4 C 0.050 3.950 5 N -0.549 5.549 6 C 0.017 3.983 7 C 0.053 3.947 8 C -0.122 4.122 9 H 0.125 0.875 10 C 0.516 3.484 11 O -0.510 6.510 12 N -0.650 5.650 13 C 0.313 3.687 14 N -0.473 5.473 15 C 0.075 3.925 16 C -0.146 4.146 17 C -0.150 4.150 18 C 0.043 3.957 19 O -0.324 6.324 20 C 0.086 3.914 21 C -0.005 4.005 22 C -0.536 4.536 23 H 0.042 0.958 24 C 0.012 3.988 25 N -0.945 5.945 26 Si 0.948 3.052 27 H -0.265 1.265 28 H -0.284 1.284 29 H -0.244 1.244 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.428 0.572 41 H 0.185 0.815 42 H 0.173 0.827 43 H 0.153 0.847 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.031 0.969 47 H 0.030 0.970 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 10.126 19.619 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.090 0.910 4 C -0.077 4.077 5 N -0.273 5.273 6 C -0.131 4.131 7 C -0.075 4.075 8 C -0.144 4.144 9 H 0.143 0.857 10 C 0.303 3.697 11 O -0.381 6.381 12 N -0.298 5.298 13 C 0.081 3.919 14 N -0.189 5.189 15 C -0.082 4.082 16 C -0.167 4.167 17 C -0.176 4.176 18 C -0.008 4.008 19 O -0.237 6.237 20 C 0.012 3.988 21 C -0.042 4.042 22 C -0.574 4.574 23 H 0.060 0.940 24 C -0.186 4.186 25 N -0.584 5.584 26 Si 0.771 3.229 27 H -0.190 1.190 28 H -0.210 1.210 29 H -0.167 1.167 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.267 0.733 41 H 0.202 0.798 42 H 0.190 0.810 43 H 0.171 0.829 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.105 11.257 20.761 26.097 hybrid contribution 0.386 -1.882 -1.555 2.472 sum -10.719 9.375 19.205 23.909 Atomic orbital electron populations 1.21663 0.92877 1.02631 1.02129 1.22124 0.96900 0.98951 0.91746 0.90961 1.23187 0.87869 0.98988 0.97672 1.63544 1.28438 1.28431 1.06918 1.22629 1.01299 0.88069 1.01080 1.22769 0.94449 1.01787 0.88524 1.22724 1.00119 0.99254 0.92299 0.85701 1.21039 0.76552 0.88314 0.83802 1.90759 1.45784 1.18882 1.82682 1.43596 1.60187 1.15862 1.10197 1.18009 0.98398 0.89598 0.85898 1.67682 1.18117 1.01663 1.31411 1.23035 0.97380 0.99998 0.87776 1.22268 0.98633 0.95441 1.00351 1.21901 1.02336 0.95241 0.98153 1.19672 0.99966 0.86275 0.94850 1.85965 1.74403 1.23995 1.39329 1.22757 0.96388 0.96450 0.83236 1.19429 0.96852 0.91421 0.96515 1.21124 1.39885 0.98033 0.98349 0.93994 1.25898 0.93885 1.00000 0.98828 1.70034 1.41584 1.18915 1.27905 0.85690 0.78310 0.78557 0.80354 1.19028 1.20994 1.16729 0.91191 0.90977 0.93791 0.91440 0.89271 0.91172 0.90217 0.94355 0.91788 0.90020 0.73334 0.79767 0.80955 0.82895 0.92008 0.92073 0.95088 0.95184 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.31 71.98 0.67 -1.44 16 2 C -0.08 -1.42 2.69 -9.41 -0.03 -1.44 16 3 H 0.07 1.71 7.50 -2.38 -0.02 1.69 16 4 C 0.05 0.73 6.20 86.77 0.54 1.27 16 5 N -0.55 -9.55 5.44 -911.66 -4.96 -14.51 16 6 C 0.02 0.23 9.12 127.69 1.16 1.39 16 7 C 0.05 0.97 6.43 86.65 0.56 1.53 16 8 C -0.12 -2.32 2.79 -10.36 -0.03 -2.35 16 9 H 0.13 1.88 8.04 -2.38 -0.02 1.86 16 10 C 0.52 13.88 6.99 87.66 0.61 14.49 16 11 O -0.51 -17.23 14.03 -3.04 -0.04 -17.28 16 12 N -0.65 -17.75 5.33 -308.02 -1.64 -19.39 16 13 C 0.31 9.81 7.45 132.98 0.99 10.80 16 14 N -0.47 -15.02 7.88 -192.59 -1.52 -16.54 16 15 C 0.07 1.83 11.17 84.64 0.95 2.77 16 16 C -0.15 -3.17 10.10 22.36 0.23 -2.94 16 17 C -0.15 -3.98 9.14 22.53 0.21 -3.78 16 18 C 0.04 1.33 6.72 22.70 0.15 1.48 16 19 O -0.32 -10.81 9.38 -93.20 -0.87 -11.68 16 20 C 0.09 3.14 4.70 71.98 0.34 3.48 16 21 C 0.00 -0.20 4.41 29.85 0.13 -0.07 16 22 C -0.54 -28.99 9.66 25.60 0.25 -28.74 16 23 H 0.04 2.47 7.99 -2.91 -0.02 2.44 16 24 C 0.01 0.66 5.47 84.65 0.46 1.12 16 25 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 26 Si 0.95 41.71 27.47 68.60 1.88 43.60 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.24 -9.88 6.54 99.48 0.65 -9.22 16 30 H 0.07 0.85 8.08 -2.38 -0.02 0.83 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.78 7.63 -2.39 -0.02 0.76 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.04 0.44 8.10 -2.39 -0.02 0.42 16 38 H 0.06 1.42 7.82 -2.39 -0.02 1.40 16 39 H 0.08 1.25 7.58 -2.39 -0.02 1.23 16 40 H 0.43 10.09 8.03 -92.71 -0.74 9.35 16 41 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 42 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.15 3.79 6.44 -2.91 -0.02 3.77 16 44 H 0.06 2.19 7.69 -2.39 -0.02 2.17 16 45 H 0.06 2.18 7.71 -2.39 -0.02 2.16 16 46 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 47 H 0.03 1.27 7.57 -2.39 -0.02 1.26 16 48 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -71.17 389.10 0.49 -70.67 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.16 Total: 23.97 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 7.19 Total: -2.42 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -7.82 Total: -106.86 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.92 Total: -28.96 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.60 kcal Total: -71.17 0.49 -70.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362748238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.415 kcal (2) G-P(sol) polarization free energy of solvation -71.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds