Wall clock time and date at job start Tue Mar 31 2020 17:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.72723 * 2 1 4 4 O 1.44627 * 110.98511 * 236.48907 * 2 1 3 5 5 C 1.43731 * 105.66509 * 203.99925 * 4 2 1 6 6 C 1.53001 * 109.72057 * 265.52588 * 5 4 2 7 7 C 1.53000 * 109.72478 * 144.93990 * 5 4 2 8 8 N 1.47613 * 108.22433 * 25.22660 * 5 4 2 9 9 C 1.48394 * 106.00319 * 358.74957 * 8 5 4 10 10 H 1.08997 * 110.76156 * 97.08937 * 9 8 5 11 11 C 1.52996 * 110.76346 * 220.48022 * 9 8 5 12 12 N 1.46499 * 109.47089 * 298.29445 * 11 9 8 13 13 C 1.34773 * 120.00015 * 179.97438 * 12 11 9 14 14 O 1.21580 * 120.00236 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00168 * 179.97438 * 13 12 11 16 16 C 1.39237 * 120.00028 * 175.31705 * 15 13 12 17 17 C 1.39475 * 119.83729 * 215.23188 * 16 15 13 18 18 C 1.36382 * 120.17386 * 179.76622 * 17 16 15 19 19 C 1.40865 * 119.82230 * 0.49388 * 18 17 16 20 20 C 1.41155 * 120.16243 * 179.78877 * 19 18 17 21 21 H 1.07998 * 119.99911 * 328.74024 * 20 19 18 22 22 C 1.39898 * 120.00397 * 148.73975 * 20 19 18 23 23 N 1.30873 * 120.00023 * 167.75723 * 22 20 19 24 24 Si 1.86803 * 119.99610 * 347.76250 * 22 20 19 25 25 H 1.48500 * 109.47331 * 92.59446 * 24 22 20 26 26 H 1.48500 * 109.46586 * 212.59496 * 24 22 20 27 27 H 1.48502 * 109.47295 * 332.58850 * 24 22 20 28 28 C 1.40871 * 119.67786 * 359.75751 * 19 18 17 29 29 C 1.36383 * 119.82299 * 0.02562 * 28 19 18 30 30 H 1.08998 * 109.46784 * 299.29959 * 1 2 3 31 31 H 1.08998 * 109.47246 * 59.29351 * 1 2 3 32 32 H 1.08995 * 109.47208 * 179.29962 * 1 2 3 33 33 H 1.09001 * 109.46944 * 178.78553 * 6 5 4 34 34 H 1.09004 * 109.47116 * 298.78170 * 6 5 4 35 35 H 1.08997 * 109.47846 * 58.78472 * 6 5 4 36 36 H 1.08995 * 109.46660 * 301.20731 * 7 5 4 37 37 H 1.08993 * 109.47155 * 61.21397 * 7 5 4 38 38 H 1.08996 * 109.46804 * 181.21313 * 7 5 4 39 39 H 1.00907 * 110.99443 * 119.37472 * 8 5 4 40 40 H 1.09004 * 109.46966 * 58.29171 * 11 9 8 41 41 H 1.08992 * 109.47427 * 178.29155 * 11 9 8 42 42 H 0.97007 * 120.00222 * 359.97438 * 12 11 9 43 43 H 0.96998 * 119.99666 * 355.32732 * 15 13 12 44 44 H 1.08011 * 119.91624 * 0.02562 * 17 16 15 45 45 H 1.07991 * 120.08745 * 180.27445 * 18 17 16 46 46 H 0.97001 * 119.99816 * 179.97438 * 23 22 20 47 47 H 1.07995 * 120.09083 * 180.02562 * 28 19 18 48 48 H 1.07996 * 119.91264 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 8 2.0480 -0.7455 -1.1259 5 6 3.3674 -1.1649 -0.7397 6 6 4.3994 -0.1573 -1.2502 7 6 3.6622 -2.5470 -1.3262 8 7 3.4190 -1.2276 0.7342 9 6 2.0806 -0.7971 1.2091 10 1 1.4502 -1.6603 1.4222 11 6 2.2055 0.1025 2.4403 12 7 2.8382 -0.6455 3.5295 13 6 3.0525 -0.0508 4.7197 14 8 2.7204 1.1064 4.8898 15 7 3.6341 -0.7391 5.7220 16 6 3.9444 -0.0980 6.9185 17 6 5.0939 -0.4587 7.6212 18 6 5.4069 0.1680 8.7914 19 6 4.5602 1.1748 9.2951 20 6 4.8749 1.8250 10.5078 21 1 5.4025 1.2922 11.2851 22 6 4.5033 3.1595 10.7030 23 7 4.5749 3.6909 11.8969 24 14 3.9049 4.1830 9.2594 25 1 2.4247 4.1004 9.1738 26 1 4.3114 5.5980 9.4537 27 1 4.5031 3.6643 8.0031 28 6 3.3981 1.5300 8.5825 29 6 3.1007 0.8973 7.4114 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 0.5248 -0.8836 32 1 -0.3633 -1.0275 -0.0126 33 1 5.3962 -0.4678 -0.9367 34 1 4.3578 -0.1143 -2.3386 35 1 4.1798 0.8279 -0.8390 36 1 2.9187 -3.2593 -0.9688 37 1 3.6231 -2.4958 -2.4142 38 1 4.6550 -2.8702 -1.0131 39 1 3.6310 -2.1625 1.0491 40 1 2.8152 0.9721 2.1946 41 1 1.2142 0.4305 2.7527 42 1 3.1029 -1.5689 3.3940 43 1 3.8367 -1.6810 5.6097 44 1 5.7402 -1.2335 7.2356 45 1 6.2996 -0.1093 9.3321 46 1 4.3177 4.6163 12.0320 47 1 2.7444 2.3011 8.9623 48 1 2.2100 1.1682 6.8640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414758708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:18 Heat of formation + Delta-G solvation = -42.597990 kcal Electronic energy + Delta-G solvation = -28361.944407 eV Core-core repulsion = 24416.788059 eV Total energy + Delta-G solvation = -3945.156348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.82164 -39.87904 -37.71263 -35.52254 -34.38355 -34.37430 -33.18606 -32.67471 -30.23605 -29.89001 -29.52634 -27.90634 -27.47622 -24.77296 -23.40546 -21.77234 -21.37555 -21.35165 -20.90948 -19.97169 -18.09352 -17.43201 -17.28431 -17.00196 -16.54705 -15.53357 -15.38645 -15.32590 -14.88324 -14.41922 -14.29768 -13.93813 -13.77758 -13.72664 -13.56534 -13.23130 -13.08417 -12.63483 -12.53426 -12.48396 -12.47623 -12.34295 -12.23400 -12.12666 -11.90936 -11.88360 -11.74087 -11.34906 -10.85058 -10.73290 -10.52782 -10.26936 -10.15098 -9.72062 -9.58886 -9.23385 -9.07210 -8.97534 -8.92259 -7.72849 -7.09499 -6.85803 -4.37925 2.52134 2.75632 2.91349 3.16187 3.21484 3.31294 3.44393 3.56414 3.63480 4.08696 4.11132 4.33507 4.44433 4.53220 4.58627 4.64054 4.64699 4.79460 4.97192 5.02160 5.13203 5.28142 5.33106 5.40646 5.46303 5.47051 5.55088 5.56129 5.61099 5.71444 5.84165 5.90352 5.95799 6.20171 6.47849 6.50966 6.66734 6.70227 6.70872 6.80715 6.94620 7.05133 7.23594 7.49418 7.66858 7.71340 7.93624 8.14560 8.37579 8.40951 8.68207 8.86141 9.01286 10.16310 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.002272 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.048273 B =12320.927614 C =12833.265327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 H 0.084 0.916 4 O -0.376 6.376 5 C 0.250 3.750 6 C -0.146 4.146 7 C -0.165 4.165 8 N -0.670 5.670 9 C 0.033 3.967 10 H 0.074 0.926 11 C 0.162 3.838 12 N -0.744 5.744 13 C 0.696 3.304 14 O -0.579 6.579 15 N -0.668 5.668 16 C 0.014 3.986 17 C -0.097 4.097 18 C -0.196 4.196 19 C 0.086 3.914 20 C -0.444 4.444 21 H 0.090 0.910 22 C 0.082 3.918 23 N -0.816 5.816 24 Si 0.913 3.087 25 H -0.271 1.271 26 H -0.294 1.294 27 H -0.241 1.241 28 C -0.228 4.228 29 C -0.063 4.063 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.347 0.653 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.391 0.609 43 H 0.392 0.608 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.284 0.716 47 H 0.102 0.898 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -11.702 -25.077 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.102 0.898 4 O -0.293 6.293 5 C 0.123 3.877 6 C -0.204 4.204 7 C -0.224 4.224 8 N -0.307 5.307 9 C -0.077 4.077 10 H 0.092 0.908 11 C 0.037 3.963 12 N -0.401 5.401 13 C 0.397 3.603 14 O -0.455 6.455 15 N -0.314 5.314 16 C -0.079 4.079 17 C -0.118 4.118 18 C -0.216 4.216 19 C 0.082 3.918 20 C -0.472 4.472 21 H 0.108 0.892 22 C -0.136 4.136 23 N -0.441 5.441 24 Si 0.740 3.260 25 H -0.197 1.197 26 H -0.222 1.222 27 H -0.165 1.165 28 C -0.248 4.248 29 C -0.083 4.083 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.165 0.835 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.223 0.777 43 H 0.225 0.775 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.095 0.905 47 H 0.120 0.880 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.692 -9.824 -24.856 27.136 hybrid contribution -0.404 -1.140 -0.671 1.383 sum -5.096 -10.963 -25.527 28.246 Atomic orbital electron populations 1.21816 0.92191 1.03173 1.03321 1.23273 0.95543 0.95912 0.83340 0.89799 1.89123 1.29689 1.72088 1.38431 1.22816 0.84031 0.94617 0.86279 1.22014 0.98489 0.99232 1.00645 1.22300 1.02312 0.94941 1.02802 1.63154 1.28423 1.31563 1.07513 1.23490 0.90003 0.98553 0.95674 0.90805 1.20976 0.98116 0.93913 0.83327 1.44873 1.67597 1.15954 1.11633 1.15979 0.79548 0.84850 0.79936 1.90918 1.56749 1.16077 1.81802 1.42026 1.64138 1.12024 1.13205 1.16912 0.98621 1.03884 0.88447 1.20170 0.94388 1.00368 0.96840 1.20593 1.00525 1.02990 0.97461 1.17804 0.90087 0.91786 0.92076 1.19444 1.31828 0.96345 0.99632 0.89178 1.26150 0.91876 0.98786 0.96790 1.69677 1.36475 1.15346 1.22593 0.86311 0.79577 0.76985 0.83106 1.19741 1.22212 1.16453 1.20742 0.99605 1.05549 0.98871 1.20487 0.97918 0.95544 0.94395 0.90311 0.91281 0.91751 0.91119 0.91882 0.91902 0.92041 0.90931 0.90515 0.83513 0.90936 0.91179 0.77668 0.77503 0.88623 0.87792 0.90542 0.88035 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.68 37.16 0.36 -0.61 16 2 C 0.08 0.63 3.51 -25.71 -0.09 0.54 16 3 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 4 O -0.38 -3.49 10.67 -35.23 -0.38 -3.87 16 5 C 0.25 1.95 1.46 -67.32 -0.10 1.85 16 6 C -0.15 -1.14 9.16 37.16 0.34 -0.80 16 7 C -0.17 -0.97 8.72 37.16 0.32 -0.65 16 8 N -0.67 -5.06 6.70 -94.83 -0.64 -5.69 16 9 C 0.03 0.26 3.05 -65.87 -0.20 0.05 16 10 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 11 C 0.16 1.70 5.42 -4.04 -0.02 1.68 16 12 N -0.74 -8.59 5.48 -65.23 -0.36 -8.94 16 13 C 0.70 11.78 8.40 -86.92 -0.73 11.05 16 14 O -0.58 -12.53 13.76 5.30 0.07 -12.46 16 15 N -0.67 -11.00 5.31 -14.10 -0.07 -11.08 16 16 C 0.01 0.30 6.30 -83.57 -0.53 -0.23 16 17 C -0.10 -2.00 9.90 -39.79 -0.39 -2.39 16 18 C -0.20 -4.53 9.74 -39.26 -0.38 -4.91 16 19 C 0.09 2.22 5.13 -106.80 -0.55 1.68 16 20 C -0.44 -12.23 9.59 -37.85 -0.36 -12.59 16 21 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 22 C 0.08 2.22 5.47 -17.34 -0.09 2.12 16 23 N -0.82 -22.37 13.93 55.55 0.77 -21.59 16 24 Si 0.91 22.26 24.39 -169.99 -4.15 18.12 16 25 H -0.27 -6.48 6.67 56.52 0.38 -6.11 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.24 -6.19 6.67 56.52 0.38 -5.81 16 28 C -0.23 -5.81 6.93 -39.25 -0.27 -6.09 16 29 C -0.06 -1.51 8.61 -39.79 -0.34 -1.85 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.35 2.05 8.22 -39.29 -0.32 1.73 16 40 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.39 3.29 8.42 -40.82 -0.34 2.94 16 43 H 0.39 4.83 8.83 -40.82 -0.36 4.47 16 44 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 47 H 0.10 2.61 4.40 -52.49 -0.23 2.38 16 48 H 0.11 2.70 6.22 -52.49 -0.33 2.38 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -32.55 385.93 -9.49 -42.04 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.52 Total: 8.81 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.04 Total: -11.15 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.29 Total: -47.30 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.30 Total: -16.33 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.15 Total: 18.12 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.55 -9.49 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414758708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.558 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds