Wall clock time and date at job start Tue Mar 31 2020 17:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.20497 * 2 1 4 4 O 1.44074 * 110.16938 * 238.21771 * 2 1 3 5 5 C 1.44374 * 105.53875 * 216.11090 * 4 2 1 6 6 C 1.53005 * 110.47785 * 158.33648 * 5 4 2 7 7 C 1.52995 * 110.48473 * 280.96393 * 5 4 2 8 8 N 1.48589 * 104.21583 * 39.65309 * 5 4 2 9 9 C 1.48446 * 103.56497 * 321.59744 * 8 5 4 10 10 H 1.08999 * 110.39631 * 263.70351 * 9 8 5 11 11 C 1.53001 * 110.39774 * 141.30099 * 9 8 5 12 12 N 1.46503 * 109.46830 * 59.74293 * 11 9 8 13 13 C 1.34781 * 120.00200 * 180.02562 * 12 11 9 14 14 O 1.21585 * 119.99571 * 359.97438 * 13 12 11 15 15 N 1.34766 * 119.99939 * 179.97438 * 13 12 11 16 16 C 1.39247 * 119.99939 * 175.70747 * 15 13 12 17 17 C 1.39473 * 119.83674 * 215.01761 * 16 15 13 18 18 C 1.36382 * 120.17078 * 179.76103 * 17 16 15 19 19 C 1.40864 * 119.82564 * 0.49750 * 18 17 16 20 20 C 1.41157 * 120.16352 * 179.78517 * 19 18 17 21 21 H 1.07999 * 119.99967 * 214.75980 * 20 19 18 22 22 C 1.39897 * 120.00072 * 34.76329 * 20 19 18 23 23 N 1.30882 * 119.99816 * 355.55702 * 22 20 19 24 24 Si 1.86793 * 120.00163 * 175.55853 * 22 20 19 25 25 H 1.48501 * 109.47016 * 89.99546 * 24 22 20 26 26 H 1.48500 * 109.47347 * 209.99773 * 24 22 20 27 27 H 1.48497 * 109.47141 * 329.99814 * 24 22 20 28 28 C 1.40873 * 119.67404 * 359.75535 * 19 18 17 29 29 C 1.36371 * 119.82599 * 0.02562 * 28 19 18 30 30 H 1.08998 * 109.47067 * 180.33302 * 1 2 3 31 31 H 1.09004 * 109.46840 * 300.32675 * 1 2 3 32 32 H 1.08999 * 109.47151 * 60.32214 * 1 2 3 33 33 H 1.08994 * 109.47256 * 61.45024 * 6 5 4 34 34 H 1.09005 * 109.46486 * 181.45350 * 6 5 4 35 35 H 1.09003 * 109.46831 * 301.44637 * 6 5 4 36 36 H 1.09000 * 109.46790 * 58.55024 * 7 5 4 37 37 H 1.08997 * 109.47232 * 178.54887 * 7 5 4 38 38 H 1.09001 * 109.47492 * 298.55487 * 7 5 4 39 39 H 1.00899 * 110.99810 * 80.77246 * 8 5 4 40 40 H 1.09001 * 109.47519 * 179.74152 * 11 9 8 41 41 H 1.09003 * 109.47113 * 299.74488 * 11 9 8 42 42 H 0.97000 * 119.99995 * 0.02562 * 12 11 9 43 43 H 0.97003 * 120.00814 * 355.71158 * 15 13 12 44 44 H 1.08007 * 119.91690 * 0.02562 * 17 16 15 45 45 H 1.07997 * 120.08673 * 180.23384 * 18 17 16 46 46 H 0.97000 * 119.99918 * 180.02562 * 23 22 20 47 47 H 1.07997 * 120.08662 * 179.97438 * 28 19 18 48 48 H 1.08001 * 119.91607 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 8 2.0268 -0.7123 -1.1496 5 6 3.2150 -1.3963 -0.6971 6 6 3.5347 -2.5780 -1.6149 7 6 4.3989 -0.4291 -0.6354 8 7 2.8637 -1.8758 0.6647 9 6 2.0615 -0.7619 1.2299 10 1 2.6904 -0.1110 1.8374 11 6 0.8995 -1.3097 2.0608 12 7 1.4256 -2.1289 3.1556 13 6 0.5791 -2.7186 4.0229 14 8 -0.6211 -2.5704 3.8970 15 7 1.0631 -3.4726 5.0296 16 6 0.1952 -4.0083 5.9777 17 6 0.6051 -4.1261 7.3056 18 6 -0.2411 -4.6453 8.2407 19 6 -1.5283 -5.0729 7.8602 20 6 -2.4083 -5.6155 8.8213 21 1 -3.0871 -6.4088 8.5449 22 6 -2.4012 -5.1258 10.1317 23 7 -1.5203 -4.2262 10.4894 24 14 -3.6487 -5.7558 11.3711 25 1 -3.0931 -6.9397 12.0746 26 1 -3.9477 -4.6881 12.3589 27 1 -4.8971 -6.1405 10.6649 28 6 -1.9332 -4.9557 6.5160 29 6 -1.0775 -4.4303 5.5933 30 1 -0.3633 -1.0276 0.0060 31 1 -0.3633 0.5189 0.8871 32 1 -0.3633 0.5088 -0.8928 33 1 3.7246 -2.2131 -2.6243 34 1 4.4184 -3.0973 -1.2440 35 1 2.6889 -3.2654 -1.6301 36 1 4.1606 0.3943 0.0379 37 1 5.2795 -0.9558 -0.2679 38 1 4.5998 -0.0367 -1.6323 39 1 2.3215 -2.7255 0.6202 40 1 0.3239 -0.4803 2.4719 41 1 0.2558 -1.9199 1.4273 42 1 2.3831 -2.2468 3.2562 43 1 2.0160 -3.6421 5.0940 44 1 1.5937 -3.8013 7.5950 45 1 0.0763 -4.7324 9.2692 46 1 -1.5151 -3.8870 11.3981 47 1 -2.9183 -5.2818 6.2170 48 1 -1.3863 -4.3401 4.5623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414758714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:24 Heat of formation + Delta-G solvation = -41.506059 kcal Electronic energy + Delta-G solvation = -28300.012890 eV Core-core repulsion = 24354.903891 eV Total energy + Delta-G solvation = -3945.108999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99437 -39.76703 -37.46324 -35.59539 -34.30929 -34.13576 -33.10830 -32.43790 -30.20349 -29.53762 -28.84499 -28.03396 -26.98244 -24.92093 -24.16503 -21.67465 -21.06949 -20.76061 -20.55953 -19.88823 -17.89405 -17.22550 -17.12189 -16.80320 -16.44852 -15.89730 -15.47728 -15.16963 -14.82842 -14.77663 -14.05684 -13.90220 -13.72934 -13.42701 -13.19301 -12.92765 -12.90476 -12.77148 -12.63072 -12.53881 -12.31010 -12.08894 -11.99723 -11.71491 -11.65339 -11.51803 -11.32266 -11.25377 -11.11762 -10.95430 -10.68489 -10.18744 -10.06420 -9.52066 -9.48450 -9.42305 -9.20086 -8.93255 -8.81628 -7.49278 -6.78771 -6.56861 -4.28997 2.69406 2.94847 3.11831 3.12245 3.16357 3.21011 3.31428 3.67730 3.77909 4.01803 4.17332 4.29023 4.39037 4.52494 4.70050 4.73063 4.75565 4.89602 5.08398 5.13510 5.19641 5.20340 5.33405 5.40564 5.43822 5.56496 5.61002 5.69307 5.70997 5.73871 5.84526 5.91238 6.23718 6.45801 6.54506 6.63286 6.78763 6.81282 6.86321 7.09426 7.20172 7.31582 7.45493 7.70019 7.90938 8.01916 8.14353 8.35827 8.50922 8.68826 8.97111 8.98110 9.13153 10.34354 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.001965 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.375332 B =14243.619002 C =14494.968981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.058 3.942 3 H 0.078 0.922 4 O -0.386 6.386 5 C 0.239 3.761 6 C -0.143 4.143 7 C -0.150 4.150 8 N -0.658 5.658 9 C 0.032 3.968 10 H 0.104 0.896 11 C 0.138 3.862 12 N -0.750 5.750 13 C 0.695 3.305 14 O -0.579 6.579 15 N -0.666 5.666 16 C 0.025 3.975 17 C -0.124 4.124 18 C -0.140 4.140 19 C 0.097 3.903 20 C -0.461 4.461 21 H 0.075 0.925 22 C 0.069 3.931 23 N -0.814 5.814 24 Si 0.915 3.085 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.264 1.264 28 C -0.204 4.204 29 C -0.087 4.087 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.349 0.651 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.397 0.603 43 H 0.392 0.608 44 H 0.090 0.910 45 H 0.132 0.868 46 H 0.277 0.723 47 H 0.095 0.905 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.303 7.412 -18.786 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.002 4.002 3 H 0.096 0.904 4 O -0.303 6.303 5 C 0.112 3.888 6 C -0.201 4.201 7 C -0.208 4.208 8 N -0.296 5.296 9 C -0.079 4.079 10 H 0.122 0.878 11 C 0.013 3.987 12 N -0.408 5.408 13 C 0.395 3.605 14 O -0.456 6.456 15 N -0.312 5.312 16 C -0.068 4.068 17 C -0.144 4.144 18 C -0.161 4.161 19 C 0.095 3.905 20 C -0.493 4.493 21 H 0.093 0.907 22 C -0.146 4.146 23 N -0.441 5.441 24 Si 0.740 3.260 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.188 1.188 28 C -0.224 4.224 29 C -0.107 4.107 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.232 0.768 43 H 0.225 0.775 44 H 0.108 0.892 45 H 0.149 0.851 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.798 7.843 -18.613 23.391 hybrid contribution -0.339 -0.161 0.428 0.569 sum 11.459 7.682 -18.185 22.826 Atomic orbital electron populations 1.22072 0.92959 1.03567 1.03052 1.23248 0.95892 0.96082 0.84935 0.90407 1.89199 1.42081 1.65852 1.33166 1.23503 0.87139 0.91763 0.86423 1.21833 1.02740 0.96115 0.99400 1.22017 0.97367 0.99005 1.02404 1.63909 1.42130 1.05538 1.18065 1.23484 0.94331 0.93787 0.96261 0.87758 1.21523 0.94398 0.95129 0.87631 1.45055 1.09355 1.55119 1.31304 1.16010 0.85389 0.78998 0.80076 1.90911 1.13285 1.66378 1.75073 1.42101 1.09783 1.52173 1.27152 1.17073 0.92896 1.09439 0.87411 1.20296 0.99143 1.03741 0.91237 1.21175 0.93053 1.02859 0.98963 1.17717 0.91424 0.90070 0.91337 1.19471 1.18102 1.18123 0.93560 0.90701 1.25866 0.95962 0.93824 0.98921 1.69769 1.31341 1.23717 1.19319 0.86208 0.81132 0.78942 0.79734 1.19592 1.20369 1.18776 1.20808 0.98728 1.08363 0.94506 1.20417 0.93221 0.98158 0.98896 0.91255 0.90347 0.91687 0.91008 0.90228 0.91695 0.92168 0.90703 0.91499 0.83245 0.90517 0.91076 0.76846 0.77500 0.89171 0.85054 0.91247 0.88671 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.43 37.16 0.31 -1.00 16 2 C 0.06 0.48 3.54 -26.14 -0.09 0.39 16 3 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 4 O -0.39 -3.76 10.83 -35.23 -0.38 -4.14 16 5 C 0.24 1.89 1.50 -66.78 -0.10 1.79 16 6 C -0.14 -0.96 9.13 37.16 0.34 -0.62 16 7 C -0.15 -1.01 9.00 37.16 0.33 -0.67 16 8 N -0.66 -5.26 6.92 -94.28 -0.65 -5.92 16 9 C 0.03 0.26 3.07 -66.27 -0.20 0.06 16 10 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 11 C 0.14 1.46 3.83 -4.04 -0.02 1.44 16 12 N -0.75 -9.08 5.45 -65.22 -0.36 -9.44 16 13 C 0.69 12.18 8.39 -86.92 -0.73 11.45 16 14 O -0.58 -12.72 13.76 5.29 0.07 -12.65 16 15 N -0.67 -11.75 5.31 -14.10 -0.07 -11.82 16 16 C 0.02 0.55 6.31 -83.57 -0.53 0.02 16 17 C -0.12 -2.84 9.90 -39.79 -0.39 -3.24 16 18 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 19 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 20 C -0.46 -12.47 9.02 -37.85 -0.34 -12.81 16 21 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 22 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 23 N -0.81 -21.43 10.59 55.55 0.59 -20.84 16 24 Si 0.91 19.27 29.56 -169.99 -5.03 14.24 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.20 -5.25 9.74 -39.26 -0.38 -5.63 16 29 C -0.09 -2.11 8.61 -39.79 -0.34 -2.46 16 30 H 0.07 0.64 6.50 -51.93 -0.34 0.30 16 31 H 0.08 0.60 7.08 -51.93 -0.37 0.23 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 36 H 0.06 0.41 7.15 -51.93 -0.37 0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.35 3.00 8.11 -39.29 -0.32 2.68 16 40 H 0.08 0.87 7.13 -51.93 -0.37 0.50 16 41 H 0.07 0.83 6.45 -51.93 -0.33 0.49 16 42 H 0.40 3.87 8.35 -40.82 -0.34 3.53 16 43 H 0.39 5.42 8.83 -40.82 -0.36 5.06 16 44 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 46 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 47 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 48 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -31.34 382.98 -10.44 -41.78 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -7.22 Total: 14.57 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.17 Total: -11.55 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.49 Total: -48.02 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.31 Total: -16.79 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.34 -10.44 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414758714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.277 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds