Wall clock time and date at job start Tue Mar 31 2020 17:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.20497 * 2 1 4 4 O 1.44074 * 110.16938 * 238.21771 * 2 1 3 5 5 C 1.44374 * 105.53875 * 216.11090 * 4 2 1 6 6 C 1.53005 * 110.47785 * 158.33648 * 5 4 2 7 7 C 1.52995 * 110.48473 * 280.96393 * 5 4 2 8 8 N 1.48589 * 104.21583 * 39.65309 * 5 4 2 9 9 C 1.48446 * 103.56497 * 321.59744 * 8 5 4 10 10 H 1.08999 * 110.39631 * 263.70351 * 9 8 5 11 11 C 1.53001 * 110.39774 * 141.30099 * 9 8 5 12 12 N 1.46503 * 109.46830 * 59.74293 * 11 9 8 13 13 C 1.34781 * 120.00200 * 180.02562 * 12 11 9 14 14 O 1.21585 * 119.99571 * 359.97438 * 13 12 11 15 15 N 1.34766 * 119.99939 * 179.97438 * 13 12 11 16 16 C 1.39247 * 119.99939 * 175.70747 * 15 13 12 17 17 C 1.39473 * 119.83674 * 215.01761 * 16 15 13 18 18 C 1.36382 * 120.17078 * 179.76103 * 17 16 15 19 19 C 1.40864 * 119.82564 * 0.49750 * 18 17 16 20 20 C 1.41157 * 120.16352 * 179.78517 * 19 18 17 21 21 H 1.07999 * 119.99967 * 214.75980 * 20 19 18 22 22 C 1.39897 * 120.00072 * 34.76329 * 20 19 18 23 23 N 1.30882 * 119.99816 * 355.55702 * 22 20 19 24 24 Si 1.86793 * 120.00163 * 175.55853 * 22 20 19 25 25 H 1.48501 * 109.47016 * 89.99546 * 24 22 20 26 26 H 1.48500 * 109.47347 * 209.99773 * 24 22 20 27 27 H 1.48497 * 109.47141 * 329.99814 * 24 22 20 28 28 C 1.40873 * 119.67404 * 359.75535 * 19 18 17 29 29 C 1.36371 * 119.82599 * 0.02562 * 28 19 18 30 30 H 1.08998 * 109.47067 * 180.33302 * 1 2 3 31 31 H 1.09004 * 109.46840 * 300.32675 * 1 2 3 32 32 H 1.08999 * 109.47151 * 60.32214 * 1 2 3 33 33 H 1.08994 * 109.47256 * 61.45024 * 6 5 4 34 34 H 1.09005 * 109.46486 * 181.45350 * 6 5 4 35 35 H 1.09003 * 109.46831 * 301.44637 * 6 5 4 36 36 H 1.09000 * 109.46790 * 58.55024 * 7 5 4 37 37 H 1.08997 * 109.47232 * 178.54887 * 7 5 4 38 38 H 1.09001 * 109.47492 * 298.55487 * 7 5 4 39 39 H 1.00899 * 110.99810 * 80.77246 * 8 5 4 40 40 H 1.09001 * 109.47519 * 179.74152 * 11 9 8 41 41 H 1.09003 * 109.47113 * 299.74488 * 11 9 8 42 42 H 0.97000 * 119.99995 * 0.02562 * 12 11 9 43 43 H 0.97003 * 120.00814 * 355.71158 * 15 13 12 44 44 H 1.08007 * 119.91690 * 0.02562 * 17 16 15 45 45 H 1.07997 * 120.08673 * 180.23384 * 18 17 16 46 46 H 0.97000 * 119.99918 * 180.02562 * 23 22 20 47 47 H 1.07997 * 120.08662 * 179.97438 * 28 19 18 48 48 H 1.08001 * 119.91607 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 8 2.0268 -0.7123 -1.1496 5 6 3.2150 -1.3963 -0.6971 6 6 3.5347 -2.5780 -1.6149 7 6 4.3989 -0.4291 -0.6354 8 7 2.8637 -1.8758 0.6647 9 6 2.0615 -0.7619 1.2299 10 1 2.6904 -0.1110 1.8374 11 6 0.8995 -1.3097 2.0608 12 7 1.4256 -2.1289 3.1556 13 6 0.5791 -2.7186 4.0229 14 8 -0.6211 -2.5704 3.8970 15 7 1.0631 -3.4726 5.0296 16 6 0.1952 -4.0083 5.9777 17 6 0.6051 -4.1261 7.3056 18 6 -0.2411 -4.6453 8.2407 19 6 -1.5283 -5.0729 7.8602 20 6 -2.4083 -5.6155 8.8213 21 1 -3.0871 -6.4088 8.5449 22 6 -2.4012 -5.1258 10.1317 23 7 -1.5203 -4.2262 10.4894 24 14 -3.6487 -5.7558 11.3711 25 1 -3.0931 -6.9397 12.0746 26 1 -3.9477 -4.6881 12.3589 27 1 -4.8971 -6.1405 10.6649 28 6 -1.9332 -4.9557 6.5160 29 6 -1.0775 -4.4303 5.5933 30 1 -0.3633 -1.0276 0.0060 31 1 -0.3633 0.5189 0.8871 32 1 -0.3633 0.5088 -0.8928 33 1 3.7246 -2.2131 -2.6243 34 1 4.4184 -3.0973 -1.2440 35 1 2.6889 -3.2654 -1.6301 36 1 4.1606 0.3943 0.0379 37 1 5.2795 -0.9558 -0.2679 38 1 4.5998 -0.0367 -1.6323 39 1 2.3215 -2.7255 0.6202 40 1 0.3239 -0.4803 2.4719 41 1 0.2558 -1.9199 1.4273 42 1 2.3831 -2.2468 3.2562 43 1 2.0160 -3.6421 5.0940 44 1 1.5937 -3.8013 7.5950 45 1 0.0763 -4.7324 9.2692 46 1 -1.5151 -3.8870 11.3981 47 1 -2.9183 -5.2818 6.2170 48 1 -1.3863 -4.3401 4.5623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414758714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:23 Heat of formation + Delta-G solvation = -64.938556 kcal Electronic energy + Delta-G solvation = -28301.028999 eV Core-core repulsion = 24354.903891 eV Total energy + Delta-G solvation = -3946.125108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78462 -41.14774 -39.22320 -36.71144 -35.98176 -34.83943 -34.67366 -33.59856 -31.44877 -30.81733 -30.66111 -28.55476 -28.05437 -26.49138 -25.09686 -23.38691 -22.66236 -21.79863 -21.52071 -21.09208 -19.37479 -19.05461 -18.31996 -17.53036 -17.43383 -17.07134 -16.76243 -16.38045 -16.04755 -15.85273 -15.63379 -15.25220 -14.89424 -14.53269 -14.46695 -14.11208 -13.93925 -13.87057 -13.59358 -13.53556 -13.41544 -13.19793 -13.04411 -12.90087 -12.85952 -12.78761 -12.61829 -12.46335 -12.31735 -12.20219 -11.94913 -11.80764 -11.37965 -11.22147 -11.01544 -10.82176 -10.63653 -10.16349 -10.05342 -9.43364 -8.66057 -8.47434 -6.29638 0.87228 1.17354 1.40501 1.47980 1.55073 1.73362 2.21908 2.26575 2.65842 2.83819 3.07505 3.37042 3.44191 3.68450 3.72292 3.79899 3.96180 4.04187 4.24972 4.38722 4.42074 4.46675 4.55324 4.58470 4.69278 4.71421 4.74682 4.82361 4.88385 4.96020 5.03150 5.05389 5.16207 5.17649 5.18915 5.22950 5.30266 5.35638 5.45395 5.48274 5.72095 5.84820 5.94005 6.06204 6.13313 6.14356 6.28425 6.43026 6.71424 6.99773 7.04142 7.17428 7.67444 8.45141 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.001965 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.375332 B =14243.619002 C =14494.968981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.058 3.942 3 H 0.092 0.908 4 O -0.405 6.405 5 C 0.232 3.768 6 C -0.142 4.142 7 C -0.147 4.147 8 N -0.655 5.655 9 C 0.044 3.956 10 H 0.119 0.881 11 C 0.140 3.860 12 N -0.724 5.724 13 C 0.693 3.307 14 O -0.625 6.625 15 N -0.658 5.658 16 C 0.043 3.957 17 C -0.120 4.120 18 C -0.158 4.158 19 C 0.064 3.936 20 C -0.498 4.498 21 H 0.071 0.929 22 C 0.026 3.974 23 N -0.842 5.842 24 Si 0.988 3.012 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.264 1.264 28 C -0.219 4.219 29 C -0.098 4.098 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.345 0.655 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.414 0.586 43 H 0.414 0.586 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.284 0.716 47 H 0.094 0.906 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.086 8.267 -19.194 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.002 4.002 3 H 0.110 0.890 4 O -0.322 6.322 5 C 0.105 3.895 6 C -0.200 4.200 7 C -0.205 4.205 8 N -0.292 5.292 9 C -0.067 4.067 10 H 0.137 0.863 11 C 0.015 3.985 12 N -0.382 5.382 13 C 0.394 3.606 14 O -0.505 6.505 15 N -0.306 5.306 16 C -0.051 4.051 17 C -0.141 4.141 18 C -0.178 4.178 19 C 0.062 3.938 20 C -0.529 4.529 21 H 0.089 0.911 22 C -0.185 4.185 23 N -0.470 5.470 24 Si 0.809 3.191 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.188 1.188 28 C -0.240 4.240 29 C -0.118 4.118 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.251 0.749 43 H 0.251 0.749 44 H 0.143 0.857 45 H 0.137 0.863 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.672 8.715 -19.069 25.029 hybrid contribution -0.791 -0.355 0.366 0.941 sum 12.881 8.360 -18.703 24.199 Atomic orbital electron populations 1.22060 0.93333 1.02721 1.03445 1.23315 0.95646 0.96647 0.84557 0.88992 1.89192 1.42932 1.66223 1.33896 1.23740 0.87058 0.92329 0.86361 1.21847 1.02888 0.95680 0.99537 1.22001 0.96964 0.98726 1.02767 1.63974 1.41690 1.05257 1.18328 1.23410 0.93447 0.93856 0.95940 0.86297 1.21603 0.95392 0.94470 0.87020 1.44815 1.09590 1.53653 1.30100 1.16168 0.85206 0.78942 0.80304 1.90893 1.15600 1.67827 1.76182 1.41868 1.10351 1.52037 1.26344 1.17079 0.92610 1.07235 0.88163 1.20534 1.00161 1.02565 0.90825 1.21164 0.93331 1.04163 0.99125 1.18030 0.92373 0.91419 0.91994 1.19693 1.19084 1.19195 0.94931 0.91071 1.26726 0.97787 0.93699 1.00304 1.69831 1.32627 1.24450 1.20142 0.85112 0.78262 0.78713 0.77011 1.18410 1.19439 1.18787 1.20925 0.99246 1.09130 0.94656 1.20513 0.94215 0.98505 0.98566 0.92681 0.89809 0.91485 0.90609 0.89097 0.92453 0.92144 0.89957 0.91084 0.83700 0.90953 0.92159 0.74907 0.74877 0.85724 0.86298 0.90554 0.88770 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.43 71.98 0.61 -1.87 16 2 C 0.06 0.85 3.54 30.98 0.11 0.96 16 3 H 0.09 1.12 8.04 -2.39 -0.02 1.10 16 4 O -0.41 -7.27 10.83 -148.98 -1.61 -8.88 16 5 C 0.23 3.21 1.50 44.59 0.07 3.28 16 6 C -0.14 -1.66 9.13 71.98 0.66 -1.00 16 7 C -0.15 -1.60 9.00 71.98 0.65 -0.95 16 8 N -0.65 -9.01 6.92 -550.38 -3.81 -12.82 16 9 C 0.04 0.61 3.07 45.00 0.14 0.75 16 10 H 0.12 1.39 8.12 -2.39 -0.02 1.37 16 11 C 0.14 2.73 3.83 86.38 0.33 3.06 16 12 N -0.72 -15.91 5.45 -478.53 -2.61 -18.52 16 13 C 0.69 23.24 8.39 179.06 1.50 24.74 16 14 O -0.62 -27.20 13.76 -3.99 -0.05 -27.26 16 15 N -0.66 -21.82 5.31 -316.79 -1.68 -23.50 16 16 C 0.04 1.90 6.31 38.56 0.24 2.15 16 17 C -0.12 -5.42 9.90 22.13 0.22 -5.20 16 18 C -0.16 -8.31 8.61 22.48 0.19 -8.12 16 19 C 0.06 3.60 5.55 -21.27 -0.12 3.48 16 20 C -0.50 -27.82 9.02 23.39 0.21 -27.61 16 21 H 0.07 3.85 7.85 -2.91 -0.02 3.83 16 22 C 0.03 1.37 5.42 85.24 0.46 1.83 16 23 N -0.84 -44.99 10.59 21.82 0.23 -44.76 16 24 Si 0.99 39.75 29.56 68.60 2.03 41.78 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 28 C -0.22 -11.68 9.74 22.48 0.22 -11.46 16 29 C -0.10 -4.81 8.61 22.13 0.19 -4.62 16 30 H 0.05 1.01 6.50 -2.39 -0.02 1.00 16 31 H 0.08 1.19 7.08 -2.39 -0.02 1.18 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 36 H 0.06 0.66 7.15 -2.39 -0.02 0.64 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.34 5.32 8.11 -89.69 -0.73 4.59 16 40 H 0.07 1.54 7.13 -2.39 -0.02 1.52 16 41 H 0.06 1.37 6.45 -2.39 -0.02 1.35 16 42 H 0.41 6.70 8.35 -92.71 -0.77 5.92 16 43 H 0.41 10.10 8.83 -92.71 -0.82 9.28 16 44 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 45 H 0.12 6.51 6.13 -2.91 -0.02 6.50 16 46 H 0.28 13.76 8.30 -92.71 -0.77 13.00 16 47 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 48 H 0.11 5.26 6.22 -2.91 -0.02 5.24 16 Total: -1.00 -69.28 382.98 -3.14 -72.42 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -1.31 Total: 42.12 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 5.68 Total: -20.57 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -7.87 Total: -99.60 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.67 Total: -36.14 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -69.28 -3.14 -72.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414758714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.478 kcal (2) G-P(sol) polarization free energy of solvation -69.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds