Wall clock time and date at job start Tue Mar 31 2020 17:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.11730 * 2 1 4 4 O 1.43633 * 110.13134 * 238.35775 * 2 1 3 5 5 C 1.43709 * 108.23517 * 242.50248 * 4 2 1 6 6 C 1.52997 * 110.18686 * 94.24351 * 5 4 2 7 7 C 1.53007 * 110.18310 * 216.00039 * 5 4 2 8 8 N 1.48556 * 105.85854 * 335.11828 * 5 4 2 9 9 C 1.49164 * 102.18958 * 38.10144 * 8 5 4 10 10 H 1.09004 * 110.76307 * 82.70661 * 9 8 5 11 11 C 1.53001 * 110.91921 * 206.02659 * 9 8 5 12 12 N 1.46502 * 109.47510 * 298.36396 * 11 9 8 13 13 C 1.34772 * 120.00126 * 180.02562 * 12 11 9 14 14 O 1.21586 * 120.00332 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99732 * 180.02562 * 13 12 11 16 16 C 1.39962 * 119.99847 * 174.81779 * 15 13 12 17 17 C 1.39283 * 119.94682 * 146.37793 * 16 15 13 18 18 C 1.38487 * 120.42954 * 179.97438 * 17 16 15 19 19 C 1.37679 * 120.32205 * 0.05054 * 18 17 16 20 20 C 1.40749 * 119.88041 * 359.97318 * 19 18 17 21 21 C 1.41407 * 120.20370 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99522 * 151.77598 * 21 20 19 23 23 C 1.39932 * 120.00645 * 331.76916 * 21 20 19 24 24 N 1.30827 * 119.99529 * 348.99738 * 23 21 20 25 25 Si 1.86800 * 120.00203 * 168.98972 * 23 21 20 26 26 H 1.48498 * 109.47052 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46778 * 119.99914 * 25 23 21 28 28 H 1.48493 * 109.47344 * 240.00186 * 25 23 21 29 29 C 1.38230 * 119.94404 * 326.10206 * 16 15 13 30 30 H 1.08990 * 109.47492 * 180.18597 * 1 2 3 31 31 H 1.09003 * 109.46817 * 300.19198 * 1 2 3 32 32 H 1.09001 * 109.46810 * 60.17972 * 1 2 3 33 33 H 1.08994 * 109.47302 * 182.48134 * 6 5 4 34 34 H 1.09009 * 109.46767 * 302.47604 * 6 5 4 35 35 H 1.09003 * 109.47421 * 62.47162 * 6 5 4 36 36 H 1.09000 * 109.47120 * 297.52298 * 7 5 4 37 37 H 1.08997 * 109.46939 * 57.52662 * 7 5 4 38 38 H 1.08997 * 109.46653 * 177.51850 * 7 5 4 39 39 H 1.00902 * 111.00232 * 156.59362 * 8 5 4 40 40 H 1.08999 * 109.47369 * 58.37040 * 11 9 8 41 41 H 1.09006 * 109.46979 * 178.36185 * 11 9 8 42 42 H 0.97002 * 119.99442 * 359.97438 * 12 11 9 43 43 H 0.96997 * 120.00302 * 354.81231 * 15 13 12 44 44 H 1.08006 * 119.78512 * 359.97438 * 17 16 15 45 45 H 1.08006 * 119.84208 * 180.02562 * 18 17 16 46 46 H 1.08005 * 120.06094 * 179.97438 * 19 18 17 47 47 H 0.97000 * 119.99461 * 180.02562 * 24 23 21 48 48 H 1.08004 * 120.16452 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9048 1.0235 0.0000 4 8 2.0243 -0.7075 -1.1481 5 6 2.7708 -1.8459 -0.6877 6 6 1.8727 -3.0838 -0.6446 7 6 3.9702 -2.0964 -1.6041 8 7 3.2345 -1.5009 0.6808 9 6 2.0628 -0.7612 1.2332 10 1 1.3125 -1.4545 1.6135 11 6 2.4997 0.2156 2.3268 12 7 3.1089 -0.5288 3.4317 13 6 3.5705 0.1288 4.5137 14 8 3.4817 1.3400 4.5728 15 7 4.1315 -0.5560 5.5300 16 6 4.7081 0.1323 6.6036 17 6 4.6517 -0.4074 7.8864 18 6 5.2194 0.2648 8.9558 19 6 5.8455 1.4756 8.7624 20 6 5.9099 2.0335 7.4717 21 6 6.5518 3.2765 7.2652 22 1 7.0056 3.4977 6.3105 23 6 6.5988 4.2198 8.2976 24 7 5.8729 4.0497 9.3726 25 14 7.6982 5.7219 8.1410 26 1 8.4105 5.6803 6.8387 27 1 6.8690 6.9517 8.2121 28 1 8.6886 5.7280 9.2474 29 6 5.3378 1.3438 6.3881 30 1 -0.3634 -1.0275 0.0033 31 1 -0.3633 0.5168 0.8883 32 1 -0.3633 0.5111 -0.8916 33 1 2.4379 -3.9293 -0.2526 34 1 1.0161 -2.8889 0.0009 35 1 1.5239 -3.3150 -1.6511 36 1 3.6174 -2.3296 -2.6088 37 1 4.5953 -1.2041 -1.6364 38 1 4.5523 -2.9340 -1.2198 39 1 3.4247 -2.3332 1.2187 40 1 3.2259 0.9179 1.9177 41 1 1.6311 0.7632 2.6928 42 1 3.1794 -1.4951 3.3848 43 1 4.1355 -1.5259 5.5174 44 1 4.1619 -1.3564 8.0481 45 1 5.1704 -0.1626 9.9464 46 1 6.2865 1.9965 9.5995 47 1 5.9052 4.7038 10.0882 48 1 5.3864 1.7608 5.3930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415813601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:30 Heat of formation + Delta-G solvation = -44.384543 kcal Electronic energy + Delta-G solvation = -28379.564848 eV Core-core repulsion = 24434.331029 eV Total energy + Delta-G solvation = -3945.233819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.82229 -39.76456 -37.35475 -35.38841 -34.35825 -34.29151 -33.10018 -32.57749 -30.18773 -29.74233 -28.52587 -27.74632 -27.01837 -25.22212 -23.55424 -21.75102 -21.30655 -21.04050 -20.76222 -19.87249 -17.96901 -17.64847 -16.92977 -16.68202 -15.77226 -15.47098 -15.28937 -15.17533 -14.75294 -14.52254 -14.34522 -13.95013 -13.79503 -13.54501 -13.34624 -13.18790 -12.91968 -12.80041 -12.72240 -12.65126 -12.31610 -12.15449 -12.09411 -11.85303 -11.63424 -11.56166 -11.26114 -11.23697 -11.06215 -10.57580 -10.43404 -10.16881 -10.11887 -9.68588 -9.53029 -9.19039 -9.15285 -8.88593 -8.84859 -7.34663 -6.79905 -6.59622 -4.27583 2.77126 2.88763 3.05938 3.15038 3.21491 3.25644 3.27387 3.53620 3.78591 4.03716 4.16048 4.34946 4.42540 4.54880 4.67026 4.71120 4.75443 4.81315 4.97746 5.07112 5.15905 5.27561 5.29483 5.42482 5.46488 5.56885 5.63461 5.72351 5.76803 5.79171 5.88596 6.02019 6.27921 6.44212 6.55929 6.58315 6.80100 6.83375 6.85525 7.10829 7.16928 7.32118 7.40815 7.75475 7.87945 8.05932 8.17852 8.32562 8.49022 8.74473 8.97453 9.04566 9.11128 10.33584 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.002306 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.459303 B =12139.367363 C =12828.672436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 H 0.095 0.905 4 O -0.361 6.361 5 C 0.250 3.750 6 C -0.195 4.195 7 C -0.132 4.132 8 N -0.656 5.656 9 C 0.024 3.976 10 H 0.070 0.930 11 C 0.160 3.840 12 N -0.747 5.747 13 C 0.698 3.302 14 O -0.562 6.562 15 N -0.682 5.682 16 C 0.167 3.833 17 C -0.261 4.261 18 C -0.094 4.094 19 C -0.169 4.169 20 C 0.118 3.882 21 C -0.456 4.456 22 H 0.076 0.924 23 C 0.072 3.928 24 N -0.802 5.802 25 Si 0.911 3.089 26 H -0.261 1.261 27 H -0.275 1.275 28 H -0.273 1.273 29 C -0.206 4.206 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.349 0.651 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.388 0.612 43 H 0.393 0.607 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.277 0.723 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 -14.058 -16.932 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 H 0.113 0.887 4 O -0.278 6.278 5 C 0.121 3.879 6 C -0.254 4.254 7 C -0.190 4.190 8 N -0.291 5.291 9 C -0.086 4.086 10 H 0.088 0.912 11 C 0.035 3.965 12 N -0.404 5.404 13 C 0.398 3.602 14 O -0.437 6.437 15 N -0.328 5.328 16 C 0.075 3.925 17 C -0.283 4.283 18 C -0.113 4.113 19 C -0.189 4.189 20 C 0.115 3.885 21 C -0.486 4.486 22 H 0.094 0.906 23 C -0.144 4.144 24 N -0.428 5.428 25 Si 0.735 3.265 26 H -0.185 1.185 27 H -0.201 1.201 28 H -0.199 1.199 29 C -0.228 4.228 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.166 0.834 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.221 0.779 43 H 0.226 0.774 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.088 0.912 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.940 -12.130 -17.101 22.420 hybrid contribution -0.409 -1.151 0.401 1.286 sum -8.349 -13.282 -16.700 22.913 Atomic orbital electron populations 1.22186 0.94146 1.02626 1.03196 1.22815 0.94225 0.97007 0.83325 0.88729 1.88754 1.70162 1.39728 1.29198 1.23032 0.90291 0.85893 0.88674 1.22813 1.00651 0.98170 1.03765 1.21695 0.96005 1.02930 0.98390 1.64620 1.35464 1.26095 1.02895 1.23600 0.92454 0.96746 0.95775 0.91173 1.21007 0.98350 0.92986 0.84146 1.44927 1.67039 1.09559 1.18866 1.15942 0.78586 0.85735 0.79925 1.91007 1.61103 1.11593 1.79974 1.42570 1.60562 1.08787 1.20877 1.17217 0.96331 0.94046 0.84882 1.20015 1.14216 1.02604 0.91424 1.20460 0.99129 0.95786 0.95960 1.21398 1.04288 0.94668 0.98563 1.17521 0.88438 0.91766 0.90743 1.19575 1.31475 0.98802 0.98795 0.90556 1.25880 0.94325 0.99740 0.94406 1.69818 1.31913 1.34664 1.06448 0.86223 0.80230 0.80609 0.79397 1.18487 1.20055 1.19871 1.21006 1.05003 0.97092 0.99672 0.92328 0.90799 0.91296 0.91209 0.92194 0.90863 0.91579 0.90875 0.91231 0.83354 0.90473 0.90979 0.77900 0.77421 0.89434 0.89085 0.86113 0.91164 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.08 0.76 3.89 -26.00 -0.10 0.66 16 3 H 0.09 0.90 7.81 -51.93 -0.41 0.50 16 4 O -0.36 -3.69 10.53 -35.23 -0.37 -4.06 16 5 C 0.25 2.04 1.47 -66.79 -0.10 1.94 16 6 C -0.19 -1.20 8.84 37.16 0.33 -0.87 16 7 C -0.13 -0.99 9.29 37.16 0.35 -0.65 16 8 N -0.66 -5.45 6.87 -93.92 -0.64 -6.10 16 9 C 0.02 0.21 2.44 -65.71 -0.16 0.05 16 10 H 0.07 0.50 7.26 -51.93 -0.38 0.12 16 11 C 0.16 1.84 5.31 -4.04 -0.02 1.82 16 12 N -0.75 -9.35 5.48 -65.22 -0.36 -9.71 16 13 C 0.70 12.84 8.29 -86.92 -0.72 12.12 16 14 O -0.56 -13.32 14.05 5.29 0.07 -13.25 16 15 N -0.68 -12.27 5.35 -14.27 -0.08 -12.35 16 16 C 0.17 3.86 6.26 -83.76 -0.52 3.34 16 17 C -0.26 -5.81 9.97 -39.10 -0.39 -6.20 16 18 C -0.09 -2.23 10.02 -39.69 -0.40 -2.63 16 19 C -0.17 -4.53 8.66 -38.84 -0.34 -4.86 16 20 C 0.12 3.32 5.55 -106.85 -0.59 2.73 16 21 C -0.46 -12.81 9.06 -37.74 -0.34 -13.16 16 22 H 0.08 2.10 7.87 -52.49 -0.41 1.68 16 23 C 0.07 1.91 5.25 -17.35 -0.09 1.82 16 24 N -0.80 -21.64 10.81 55.55 0.60 -21.04 16 25 Si 0.91 19.65 29.57 -169.99 -5.03 14.62 16 26 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 28 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 29 C -0.21 -5.47 8.39 -38.69 -0.32 -5.80 16 30 H 0.06 0.39 7.83 -51.93 -0.41 -0.01 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.37 6.90 -51.92 -0.36 0.02 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.35 2.26 8.38 -39.29 -0.33 1.93 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.39 3.52 8.20 -40.82 -0.33 3.18 16 43 H 0.39 5.33 8.83 -40.82 -0.36 4.97 16 44 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 46 H 0.12 3.31 6.18 -52.48 -0.32 2.99 16 47 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 48 H 0.11 2.98 6.44 -52.48 -0.34 2.64 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -33.48 389.52 -10.44 -43.91 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -7.43 Total: 12.62 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.08 Total: -10.53 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.48 Total: -49.19 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.30 Total: -17.31 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.48 -10.44 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415813601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.472 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds