Wall clock time and date at job start Tue Mar 31 2020 17:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.11730 * 2 1 4 4 O 1.43633 * 110.13134 * 238.35775 * 2 1 3 5 5 C 1.43709 * 108.23517 * 242.50248 * 4 2 1 6 6 C 1.52997 * 110.18686 * 94.24351 * 5 4 2 7 7 C 1.53007 * 110.18310 * 216.00039 * 5 4 2 8 8 N 1.48556 * 105.85854 * 335.11828 * 5 4 2 9 9 C 1.49164 * 102.18958 * 38.10144 * 8 5 4 10 10 H 1.09004 * 110.76307 * 82.70661 * 9 8 5 11 11 C 1.53001 * 110.91921 * 206.02659 * 9 8 5 12 12 N 1.46502 * 109.47510 * 298.36396 * 11 9 8 13 13 C 1.34772 * 120.00126 * 180.02562 * 12 11 9 14 14 O 1.21586 * 120.00332 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99732 * 180.02562 * 13 12 11 16 16 C 1.39962 * 119.99847 * 174.81779 * 15 13 12 17 17 C 1.39283 * 119.94682 * 146.37793 * 16 15 13 18 18 C 1.38487 * 120.42954 * 179.97438 * 17 16 15 19 19 C 1.37679 * 120.32205 * 0.05054 * 18 17 16 20 20 C 1.40749 * 119.88041 * 359.97318 * 19 18 17 21 21 C 1.41407 * 120.20370 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99522 * 151.77598 * 21 20 19 23 23 C 1.39932 * 120.00645 * 331.76916 * 21 20 19 24 24 N 1.30827 * 119.99529 * 348.99738 * 23 21 20 25 25 Si 1.86800 * 120.00203 * 168.98972 * 23 21 20 26 26 H 1.48498 * 109.47052 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46778 * 119.99914 * 25 23 21 28 28 H 1.48493 * 109.47344 * 240.00186 * 25 23 21 29 29 C 1.38230 * 119.94404 * 326.10206 * 16 15 13 30 30 H 1.08990 * 109.47492 * 180.18597 * 1 2 3 31 31 H 1.09003 * 109.46817 * 300.19198 * 1 2 3 32 32 H 1.09001 * 109.46810 * 60.17972 * 1 2 3 33 33 H 1.08994 * 109.47302 * 182.48134 * 6 5 4 34 34 H 1.09009 * 109.46767 * 302.47604 * 6 5 4 35 35 H 1.09003 * 109.47421 * 62.47162 * 6 5 4 36 36 H 1.09000 * 109.47120 * 297.52298 * 7 5 4 37 37 H 1.08997 * 109.46939 * 57.52662 * 7 5 4 38 38 H 1.08997 * 109.46653 * 177.51850 * 7 5 4 39 39 H 1.00902 * 111.00232 * 156.59362 * 8 5 4 40 40 H 1.08999 * 109.47369 * 58.37040 * 11 9 8 41 41 H 1.09006 * 109.46979 * 178.36185 * 11 9 8 42 42 H 0.97002 * 119.99442 * 359.97438 * 12 11 9 43 43 H 0.96997 * 120.00302 * 354.81231 * 15 13 12 44 44 H 1.08006 * 119.78512 * 359.97438 * 17 16 15 45 45 H 1.08006 * 119.84208 * 180.02562 * 18 17 16 46 46 H 1.08005 * 120.06094 * 179.97438 * 19 18 17 47 47 H 0.97000 * 119.99461 * 180.02562 * 24 23 21 48 48 H 1.08004 * 120.16452 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9048 1.0235 0.0000 4 8 2.0243 -0.7075 -1.1481 5 6 2.7708 -1.8459 -0.6877 6 6 1.8727 -3.0838 -0.6446 7 6 3.9702 -2.0964 -1.6041 8 7 3.2345 -1.5009 0.6808 9 6 2.0628 -0.7612 1.2332 10 1 1.3125 -1.4545 1.6135 11 6 2.4997 0.2156 2.3268 12 7 3.1089 -0.5288 3.4317 13 6 3.5705 0.1288 4.5137 14 8 3.4817 1.3400 4.5728 15 7 4.1315 -0.5560 5.5300 16 6 4.7081 0.1323 6.6036 17 6 4.6517 -0.4074 7.8864 18 6 5.2194 0.2648 8.9558 19 6 5.8455 1.4756 8.7624 20 6 5.9099 2.0335 7.4717 21 6 6.5518 3.2765 7.2652 22 1 7.0056 3.4977 6.3105 23 6 6.5988 4.2198 8.2976 24 7 5.8729 4.0497 9.3726 25 14 7.6982 5.7219 8.1410 26 1 8.4105 5.6803 6.8387 27 1 6.8690 6.9517 8.2121 28 1 8.6886 5.7280 9.2474 29 6 5.3378 1.3438 6.3881 30 1 -0.3634 -1.0275 0.0033 31 1 -0.3633 0.5168 0.8883 32 1 -0.3633 0.5111 -0.8916 33 1 2.4379 -3.9293 -0.2526 34 1 1.0161 -2.8889 0.0009 35 1 1.5239 -3.3150 -1.6511 36 1 3.6174 -2.3296 -2.6088 37 1 4.5953 -1.2041 -1.6364 38 1 4.5523 -2.9340 -1.2198 39 1 3.4247 -2.3332 1.2187 40 1 3.2259 0.9179 1.9177 41 1 1.6311 0.7632 2.6928 42 1 3.1794 -1.4951 3.3848 43 1 4.1355 -1.5259 5.5174 44 1 4.1619 -1.3564 8.0481 45 1 5.1704 -0.1626 9.9464 46 1 6.2865 1.9965 9.5995 47 1 5.9052 4.7038 10.0882 48 1 5.3864 1.7608 5.3930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415813601.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:29 Heat of formation + Delta-G solvation = -70.474496 kcal Electronic energy + Delta-G solvation = -28380.696193 eV Core-core repulsion = 24434.331029 eV Total energy + Delta-G solvation = -3946.365164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67519 -41.14848 -39.14448 -36.59782 -36.04129 -34.98467 -34.83412 -33.66150 -31.71539 -30.80761 -30.05871 -28.35912 -28.11384 -27.21342 -24.48730 -23.16892 -22.68290 -22.17913 -21.94020 -21.27435 -19.56337 -19.25794 -17.82494 -17.58799 -17.27152 -16.90547 -16.55210 -16.37808 -16.03443 -15.93861 -15.64227 -15.33708 -14.87027 -14.65682 -14.40092 -14.22773 -14.05683 -13.96248 -13.83229 -13.53372 -13.33054 -13.18752 -13.10682 -13.00748 -12.83340 -12.80410 -12.55048 -12.50316 -12.22203 -12.18980 -12.00815 -11.90215 -11.56103 -11.30994 -11.04565 -10.85018 -10.70067 -10.14659 -9.79302 -9.33282 -8.65457 -8.54444 -6.36161 0.94890 1.04440 1.36516 1.49071 1.52171 1.65747 2.20187 2.23907 2.61295 2.78516 2.89896 3.21307 3.58416 3.71898 3.76763 3.82124 3.93665 4.03830 4.19267 4.37312 4.43922 4.49556 4.53446 4.65951 4.67113 4.73097 4.77840 4.82492 4.87952 4.98472 5.05852 5.08196 5.13401 5.15677 5.15930 5.20887 5.27275 5.35438 5.37570 5.43214 5.74194 5.85578 5.97963 6.08240 6.14801 6.19592 6.25824 6.40330 6.72469 6.97532 7.03483 7.12024 7.62202 8.39460 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.002306 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.459303 B =12139.367363 C =12828.672436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.080 3.920 3 H 0.078 0.922 4 O -0.382 6.382 5 C 0.244 3.756 6 C -0.188 4.188 7 C -0.132 4.132 8 N -0.669 5.669 9 C 0.040 3.960 10 H 0.096 0.904 11 C 0.161 3.839 12 N -0.717 5.717 13 C 0.694 3.306 14 O -0.619 6.619 15 N -0.668 5.668 16 C 0.176 3.824 17 C -0.246 4.246 18 C -0.093 4.093 19 C -0.195 4.195 20 C 0.086 3.914 21 C -0.501 4.501 22 H 0.062 0.938 23 C 0.031 3.969 24 N -0.832 5.832 25 Si 0.985 3.015 26 H -0.264 1.264 27 H -0.267 1.267 28 H -0.257 1.257 29 C -0.233 4.233 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.361 0.639 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.411 0.589 43 H 0.419 0.581 44 H 0.134 0.866 45 H 0.124 0.876 46 H 0.106 0.894 47 H 0.287 0.713 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 -16.765 -16.938 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.096 0.904 4 O -0.300 6.300 5 C 0.116 3.884 6 C -0.247 4.247 7 C -0.190 4.190 8 N -0.306 5.306 9 C -0.070 4.070 10 H 0.114 0.886 11 C 0.036 3.964 12 N -0.375 5.375 13 C 0.394 3.606 14 O -0.499 6.499 15 N -0.316 5.316 16 C 0.081 3.919 17 C -0.267 4.267 18 C -0.111 4.111 19 C -0.215 4.215 20 C 0.084 3.916 21 C -0.531 4.531 22 H 0.081 0.919 23 C -0.182 4.182 24 N -0.459 5.459 25 Si 0.806 3.194 26 H -0.187 1.187 27 H -0.192 1.192 28 H -0.181 1.181 29 C -0.255 4.255 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.180 0.820 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.248 0.752 43 H 0.256 0.744 44 H 0.152 0.848 45 H 0.142 0.858 46 H 0.124 0.876 47 H 0.097 0.903 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.990 -14.949 -17.144 24.458 hybrid contribution -0.160 -0.459 0.310 0.577 sum -9.150 -15.409 -16.834 24.587 Atomic orbital electron populations 1.22143 0.92595 1.03346 1.03483 1.22847 0.95407 0.96273 0.83316 0.90389 1.88736 1.70574 1.40694 1.29984 1.23229 0.90744 0.86142 0.88308 1.22746 1.00439 0.97477 1.04031 1.21718 0.95819 1.02553 0.98925 1.64550 1.35622 1.27014 1.03370 1.23417 0.92939 0.96306 0.94368 0.88649 1.21036 0.97332 0.93558 0.84432 1.44625 1.65189 1.10609 1.17042 1.16180 0.78438 0.85113 0.80829 1.90986 1.63253 1.14458 1.81157 1.42280 1.59786 1.09896 1.19681 1.17262 0.94811 0.93008 0.86773 1.20462 1.12397 1.03708 0.90178 1.20851 0.97598 0.94558 0.98132 1.21358 1.06254 0.96319 0.97526 1.17859 0.89367 0.92438 0.91975 1.19759 1.33726 1.00318 0.99294 0.91929 1.26723 0.95311 1.02525 0.93625 1.69863 1.32807 1.36085 1.07155 0.85126 0.78313 0.76451 0.79548 1.18741 1.19161 1.18095 1.20938 1.07090 0.99184 0.98268 0.91309 0.90120 0.91462 0.89398 0.91915 0.90861 0.90985 0.92954 0.89629 0.81973 0.93204 0.91228 0.75243 0.74352 0.84800 0.85768 0.87639 0.90275 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 71.98 0.68 -1.35 16 2 C 0.08 1.37 3.89 31.07 0.12 1.49 16 3 H 0.08 1.55 7.81 -2.39 -0.02 1.54 16 4 O -0.38 -7.49 10.53 -148.98 -1.57 -9.06 16 5 C 0.24 3.55 1.47 44.60 0.07 3.61 16 6 C -0.19 -1.76 8.84 71.98 0.64 -1.13 16 7 C -0.13 -1.83 9.29 71.98 0.67 -1.16 16 8 N -0.67 -9.87 6.87 -549.66 -3.77 -13.65 16 9 C 0.04 0.60 2.44 44.95 0.11 0.71 16 10 H 0.10 1.02 7.26 -2.38 -0.02 1.00 16 11 C 0.16 3.63 5.31 86.38 0.46 4.09 16 12 N -0.72 -16.79 5.48 -478.53 -2.62 -19.41 16 13 C 0.69 25.15 8.29 179.06 1.49 26.64 16 14 O -0.62 -30.33 14.05 -3.99 -0.06 -30.39 16 15 N -0.67 -22.80 5.35 -317.33 -1.70 -24.49 16 16 C 0.18 7.95 6.26 38.09 0.24 8.19 16 17 C -0.25 -10.27 9.97 22.58 0.23 -10.04 16 18 C -0.09 -4.25 10.02 22.20 0.22 -4.02 16 19 C -0.19 -10.64 8.66 22.75 0.20 -10.44 16 20 C 0.09 5.08 5.55 -21.31 -0.12 4.96 16 21 C -0.50 -29.81 9.06 23.46 0.21 -29.60 16 22 H 0.06 3.71 7.87 -2.91 -0.02 3.69 16 23 C 0.03 1.70 5.25 85.25 0.45 2.15 16 24 N -0.83 -46.25 10.81 21.82 0.24 -46.01 16 25 Si 0.99 41.48 29.57 68.60 2.03 43.51 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 28 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 29 C -0.23 -12.87 8.39 22.85 0.19 -12.68 16 30 H 0.07 0.75 7.83 -2.39 -0.02 0.73 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.57 6.90 -2.38 -0.02 0.55 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.36 3.57 8.38 -89.69 -0.75 2.82 16 40 H 0.05 1.42 8.10 -2.39 -0.02 1.41 16 41 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.41 6.08 8.20 -92.71 -0.76 5.32 16 43 H 0.42 9.80 8.83 -92.71 -0.82 8.98 16 44 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 45 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 46 H 0.11 6.00 6.18 -2.91 -0.02 5.98 16 47 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 48 H 0.08 4.87 6.44 -2.91 -0.02 4.85 16 Total: -1.00 -78.17 389.52 -2.94 -81.11 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -1.33 Total: 36.97 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 5.84 Total: -18.58 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -7.86 Total: -103.56 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.63 Total: -39.45 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -78.17 -2.94 -81.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415813601.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.633 kcal (2) G-P(sol) polarization free energy of solvation -78.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds