Wall clock time and date at job start Tue Mar 31 2020 17:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.10746 * 2 1 4 4 O 1.43626 * 110.13623 * 238.29120 * 2 1 3 5 5 C 1.43706 * 108.23197 * 239.13036 * 4 2 1 6 6 C 1.52999 * 110.18545 * 143.92010 * 5 4 2 7 7 C 1.53005 * 110.18659 * 265.67971 * 5 4 2 8 8 N 1.48556 * 105.79229 * 24.83782 * 5 4 2 9 9 C 1.48968 * 102.28310 * 321.89602 * 8 5 4 10 10 H 1.08999 * 110.93333 * 277.23943 * 9 8 5 11 11 C 1.53004 * 110.77304 * 153.90395 * 9 8 5 12 12 N 1.46498 * 109.46963 * 61.74471 * 11 9 8 13 13 C 1.34772 * 120.00066 * 180.02562 * 12 11 9 14 14 O 1.21583 * 120.00291 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00220 * 180.02562 * 13 12 11 16 16 C 1.39957 * 120.00306 * 184.04598 * 15 13 12 17 17 C 1.39283 * 119.94444 * 144.84433 * 16 15 13 18 18 C 1.38494 * 120.42735 * 179.97438 * 17 16 15 19 19 C 1.37690 * 120.31733 * 0.02931 * 18 17 16 20 20 C 1.40736 * 119.88559 * 359.97438 * 19 18 17 21 21 C 1.41411 * 120.20965 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99879 * 214.74846 * 21 20 19 23 23 C 1.39932 * 119.99728 * 34.74756 * 21 20 19 24 24 N 1.30823 * 120.00310 * 355.56461 * 23 21 20 25 25 Si 1.86803 * 119.99427 * 175.56466 * 23 21 20 26 26 H 1.48497 * 109.47326 * 60.00007 * 25 23 21 27 27 H 1.48501 * 109.46669 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47233 * 299.99879 * 25 23 21 29 29 C 1.38231 * 119.94609 * 324.57863 * 16 15 13 30 30 H 1.08998 * 109.47374 * 298.35751 * 1 2 3 31 31 H 1.09001 * 109.47645 * 58.35990 * 1 2 3 32 32 H 1.09005 * 109.46800 * 178.35494 * 1 2 3 33 33 H 1.09004 * 109.47549 * 61.45299 * 6 5 4 34 34 H 1.09007 * 109.46996 * 181.45189 * 6 5 4 35 35 H 1.08999 * 109.47207 * 301.44828 * 6 5 4 36 36 H 1.08996 * 109.46977 * 58.54130 * 7 5 4 37 37 H 1.08994 * 109.47373 * 178.54752 * 7 5 4 38 38 H 1.09004 * 109.47104 * 298.54980 * 7 5 4 39 39 H 1.00905 * 111.00010 * 203.44574 * 8 5 4 40 40 H 1.09003 * 109.46701 * 301.75056 * 11 9 8 41 41 H 1.08991 * 109.47406 * 181.74707 * 11 9 8 42 42 H 0.97009 * 119.99887 * 0.02562 * 12 11 9 43 43 H 0.97007 * 119.99377 * 4.31675 * 15 13 12 44 44 H 1.07995 * 119.79129 * 0.02712 * 17 16 15 45 45 H 1.08002 * 119.84093 * 180.02562 * 18 17 16 46 46 H 1.08003 * 120.05274 * 179.97438 * 19 18 17 47 47 H 0.97007 * 120.00014 * 179.97438 * 24 23 21 48 48 H 1.08001 * 120.15975 * 359.97276 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9047 1.0236 0.0000 4 8 2.0244 -0.7088 -1.1472 5 6 2.8367 -1.8006 -0.6854 6 6 2.6582 -3.0147 -1.5991 7 6 4.3082 -1.3834 -0.6444 8 7 2.3527 -2.1138 0.6837 9 6 2.0615 -0.7605 1.2342 10 1 2.9686 -0.2919 1.6159 11 6 0.9923 -0.8374 2.3260 12 7 1.4822 -1.6641 3.4317 13 6 0.7043 -1.8741 4.5121 14 8 -0.4042 -1.3779 4.5688 15 7 1.1551 -2.6343 5.5297 16 6 0.3169 -2.9224 6.6128 17 6 0.3973 -4.1615 7.2439 18 6 -0.4270 -4.4569 8.3169 19 6 -1.3362 -3.5281 8.7713 20 6 -1.4287 -2.2719 8.1435 21 6 -2.3596 -1.3127 8.6049 22 1 -2.8453 -0.6506 7.9034 23 6 -2.6514 -1.2214 9.9704 24 7 -2.1300 -2.0790 10.8095 25 14 -3.7855 0.1252 10.5950 26 1 -5.1170 -0.0112 9.9519 27 1 -3.9319 0.0052 12.0679 28 1 -3.2085 1.4524 10.2619 29 6 -0.5856 -1.9748 7.0580 30 1 -0.3634 0.4881 0.9043 31 1 -0.3634 0.5391 -0.8749 32 1 -0.3633 -1.0273 -0.0295 33 1 2.9806 -2.7602 -2.6088 34 1 3.2589 -3.8433 -1.2239 35 1 1.6079 -3.3058 -1.6156 36 1 4.4234 -0.5220 0.0134 37 1 4.9101 -2.2107 -0.2685 38 1 4.6394 -1.1202 -1.6490 39 1 3.0686 -2.5772 1.2231 40 1 0.0850 -1.2804 1.9153 41 1 0.7736 0.1658 2.6916 42 1 2.3665 -2.0604 3.3863 43 1 2.0619 -2.9785 5.5131 44 1 1.1075 -4.8963 6.8948 45 1 -0.3564 -5.4206 8.7994 46 1 -1.9772 -3.7632 9.6082 47 1 -2.3320 -2.0154 11.7562 48 1 -0.6454 -1.0120 6.5723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415813603.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:38 Heat of formation + Delta-G solvation = -39.367254 kcal Electronic energy + Delta-G solvation = -28464.005412 eV Core-core repulsion = 24518.989159 eV Total energy + Delta-G solvation = -3945.016253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.88473 -39.77667 -37.36957 -35.51020 -34.38984 -34.29089 -33.11483 -32.56978 -30.00406 -29.72168 -28.37793 -27.83445 -26.75630 -25.20726 -24.28798 -21.81808 -21.13981 -20.75356 -20.59822 -19.87506 -17.98971 -17.56952 -17.33880 -16.27862 -15.93404 -15.44207 -15.33271 -15.15198 -14.86018 -14.61114 -14.39171 -13.98635 -13.90170 -13.46051 -13.21437 -13.14252 -12.85754 -12.76266 -12.72172 -12.57083 -12.16051 -12.06322 -12.04146 -11.89933 -11.66018 -11.56323 -11.18094 -11.12226 -11.04428 -10.87464 -10.38651 -10.18989 -10.11368 -9.65932 -9.36664 -9.20431 -9.17614 -8.87966 -8.83723 -7.30006 -6.81919 -6.49572 -4.30147 2.78544 2.90090 3.04042 3.14723 3.18662 3.26707 3.27380 3.53653 3.75452 4.06002 4.18372 4.29682 4.45163 4.50054 4.65272 4.71944 4.79381 4.86837 5.01740 5.11405 5.25527 5.26309 5.28158 5.41244 5.52691 5.59860 5.65467 5.71538 5.75614 5.84184 5.97492 6.06717 6.28041 6.42252 6.55131 6.58752 6.80368 6.83398 6.84665 7.10830 7.19428 7.33231 7.42634 7.77196 7.86693 8.05929 8.21480 8.34421 8.47843 8.77336 8.98225 9.06323 9.10339 10.39424 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.002289 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.247828 B =12229.000127 C =13231.437456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.088 3.912 3 H 0.085 0.915 4 O -0.362 6.362 5 C 0.249 3.751 6 C -0.132 4.132 7 C -0.194 4.194 8 N -0.654 5.654 9 C 0.023 3.977 10 H 0.069 0.931 11 C 0.157 3.843 12 N -0.748 5.748 13 C 0.699 3.301 14 O -0.565 6.565 15 N -0.681 5.681 16 C 0.158 3.842 17 C -0.250 4.250 18 C -0.100 4.100 19 C -0.161 4.161 20 C 0.113 3.887 21 C -0.461 4.461 22 H 0.075 0.925 23 C 0.070 3.930 24 N -0.815 5.815 25 Si 0.915 3.085 26 H -0.266 1.266 27 H -0.280 1.280 28 H -0.267 1.267 29 C -0.197 4.197 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.349 0.651 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.388 0.612 43 H 0.393 0.607 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.129 0.871 47 H 0.276 0.724 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.190 1.011 -19.444 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.103 0.897 4 O -0.279 6.279 5 C 0.121 3.879 6 C -0.190 4.190 7 C -0.254 4.254 8 N -0.289 5.289 9 C -0.087 4.087 10 H 0.087 0.913 11 C 0.032 3.968 12 N -0.405 5.405 13 C 0.399 3.601 14 O -0.441 6.441 15 N -0.327 5.327 16 C 0.066 3.934 17 C -0.272 4.272 18 C -0.119 4.119 19 C -0.181 4.181 20 C 0.110 3.890 21 C -0.492 4.492 22 H 0.093 0.907 23 C -0.144 4.144 24 N -0.443 5.443 25 Si 0.740 3.260 26 H -0.191 1.191 27 H -0.205 1.205 28 H -0.192 1.192 29 C -0.219 4.219 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.220 0.780 43 H 0.226 0.774 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.147 0.853 47 H 0.087 0.913 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.375 1.265 -19.575 22.675 hybrid contribution 1.651 0.567 0.717 1.887 sum 13.026 1.832 -18.857 22.992 Atomic orbital electron populations 1.22194 0.93555 1.03657 1.02764 1.22766 0.95771 0.95221 0.83315 0.89706 1.88755 1.67164 1.42733 1.29267 1.23044 0.88748 0.87498 0.88647 1.21693 1.03707 0.95135 0.98447 1.22787 0.96591 1.02200 1.03787 1.64577 1.44298 1.17181 1.02861 1.23523 0.98864 0.90436 0.95914 0.91304 1.21215 0.96217 0.95375 0.83958 1.44982 1.19605 1.56788 1.19094 1.15932 0.84332 0.80106 0.79695 1.90973 1.19520 1.53320 1.80243 1.42529 1.15944 1.54240 1.19997 1.17247 0.94571 0.94005 0.87623 1.20102 1.07704 0.95418 1.03964 1.20532 0.96971 0.98142 0.96292 1.21631 1.00841 0.92921 1.02675 1.17566 0.90350 0.91633 0.89464 1.19483 1.21202 1.16104 0.92394 0.90659 1.25846 0.95033 0.96522 0.97011 1.69756 1.37656 1.32727 1.04136 0.86271 0.80749 0.81405 0.77607 1.19062 1.20526 1.19189 1.21294 1.00066 0.98553 1.01952 0.90532 0.91875 0.91048 0.91570 0.91274 0.90929 0.92227 0.91153 0.90832 0.83381 0.89911 0.91009 0.77951 0.77411 0.89357 0.89007 0.85342 0.91269 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.28 37.16 0.31 -1.20 16 2 C 0.09 0.77 4.24 -25.99 -0.11 0.66 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.36 -3.61 10.53 -35.23 -0.37 -3.98 16 5 C 0.25 1.97 1.46 -66.79 -0.10 1.87 16 6 C -0.13 -0.95 9.29 37.16 0.35 -0.61 16 7 C -0.19 -1.17 8.86 37.16 0.33 -0.84 16 8 N -0.65 -5.22 6.85 -94.07 -0.64 -5.86 16 9 C 0.02 0.19 2.84 -65.83 -0.19 0.00 16 10 H 0.07 0.48 7.54 -51.93 -0.39 0.09 16 11 C 0.16 1.76 4.18 -4.04 -0.02 1.74 16 12 N -0.75 -9.17 5.48 -65.23 -0.36 -9.53 16 13 C 0.70 12.60 8.40 -86.92 -0.73 11.87 16 14 O -0.57 -12.97 13.81 5.29 0.07 -12.90 16 15 N -0.68 -12.14 5.34 -14.27 -0.08 -12.22 16 16 C 0.16 3.61 6.28 -83.76 -0.53 3.08 16 17 C -0.25 -5.54 9.97 -39.10 -0.39 -5.93 16 18 C -0.10 -2.37 10.02 -39.69 -0.40 -2.77 16 19 C -0.16 -4.29 8.67 -38.84 -0.34 -4.63 16 20 C 0.11 3.16 5.55 -106.85 -0.59 2.56 16 21 C -0.46 -12.95 9.04 -37.74 -0.34 -13.29 16 22 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 23 C 0.07 1.85 5.42 -17.35 -0.09 1.75 16 24 N -0.82 -21.76 10.60 55.55 0.59 -21.17 16 25 Si 0.91 19.79 29.56 -169.99 -5.03 14.77 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 28 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 29 C -0.20 -5.20 8.43 -38.69 -0.33 -5.53 16 30 H 0.08 0.68 6.78 -51.93 -0.35 0.33 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.75 7.55 -51.93 -0.39 0.36 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.36 7.20 -51.93 -0.37 -0.01 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.35 2.16 8.37 -39.29 -0.33 1.84 16 40 H 0.08 1.09 6.36 -51.93 -0.33 0.76 16 41 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 42 H 0.39 3.45 8.19 -40.82 -0.33 3.12 16 43 H 0.39 5.33 8.84 -40.82 -0.36 4.97 16 44 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.13 3.54 6.14 -52.48 -0.32 3.22 16 47 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 48 H 0.11 3.10 6.25 -52.49 -0.33 2.77 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -32.81 384.73 -10.45 -43.26 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -7.27 Total: 13.10 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -3.16 Total: -11.25 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.49 Total: -48.79 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.30 Total: -16.88 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.81 -10.45 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415813603.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.889 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds