Wall clock time and date at job start Tue Mar 31 2020 17:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.10746 * 2 1 4 4 O 1.43626 * 110.13623 * 238.29120 * 2 1 3 5 5 C 1.43706 * 108.23197 * 239.13036 * 4 2 1 6 6 C 1.52999 * 110.18545 * 143.92010 * 5 4 2 7 7 C 1.53005 * 110.18659 * 265.67971 * 5 4 2 8 8 N 1.48556 * 105.79229 * 24.83782 * 5 4 2 9 9 C 1.48968 * 102.28310 * 321.89602 * 8 5 4 10 10 H 1.08999 * 110.93333 * 277.23943 * 9 8 5 11 11 C 1.53004 * 110.77304 * 153.90395 * 9 8 5 12 12 N 1.46498 * 109.46963 * 61.74471 * 11 9 8 13 13 C 1.34772 * 120.00066 * 180.02562 * 12 11 9 14 14 O 1.21583 * 120.00291 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00220 * 180.02562 * 13 12 11 16 16 C 1.39957 * 120.00306 * 184.04598 * 15 13 12 17 17 C 1.39283 * 119.94444 * 144.84433 * 16 15 13 18 18 C 1.38494 * 120.42735 * 179.97438 * 17 16 15 19 19 C 1.37690 * 120.31733 * 0.02931 * 18 17 16 20 20 C 1.40736 * 119.88559 * 359.97438 * 19 18 17 21 21 C 1.41411 * 120.20965 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99879 * 214.74846 * 21 20 19 23 23 C 1.39932 * 119.99728 * 34.74756 * 21 20 19 24 24 N 1.30823 * 120.00310 * 355.56461 * 23 21 20 25 25 Si 1.86803 * 119.99427 * 175.56466 * 23 21 20 26 26 H 1.48497 * 109.47326 * 60.00007 * 25 23 21 27 27 H 1.48501 * 109.46669 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47233 * 299.99879 * 25 23 21 29 29 C 1.38231 * 119.94609 * 324.57863 * 16 15 13 30 30 H 1.08998 * 109.47374 * 298.35751 * 1 2 3 31 31 H 1.09001 * 109.47645 * 58.35990 * 1 2 3 32 32 H 1.09005 * 109.46800 * 178.35494 * 1 2 3 33 33 H 1.09004 * 109.47549 * 61.45299 * 6 5 4 34 34 H 1.09007 * 109.46996 * 181.45189 * 6 5 4 35 35 H 1.08999 * 109.47207 * 301.44828 * 6 5 4 36 36 H 1.08996 * 109.46977 * 58.54130 * 7 5 4 37 37 H 1.08994 * 109.47373 * 178.54752 * 7 5 4 38 38 H 1.09004 * 109.47104 * 298.54980 * 7 5 4 39 39 H 1.00905 * 111.00010 * 203.44574 * 8 5 4 40 40 H 1.09003 * 109.46701 * 301.75056 * 11 9 8 41 41 H 1.08991 * 109.47406 * 181.74707 * 11 9 8 42 42 H 0.97009 * 119.99887 * 0.02562 * 12 11 9 43 43 H 0.97007 * 119.99377 * 4.31675 * 15 13 12 44 44 H 1.07995 * 119.79129 * 0.02712 * 17 16 15 45 45 H 1.08002 * 119.84093 * 180.02562 * 18 17 16 46 46 H 1.08003 * 120.05274 * 179.97438 * 19 18 17 47 47 H 0.97007 * 120.00014 * 179.97438 * 24 23 21 48 48 H 1.08001 * 120.15975 * 359.97276 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9047 1.0236 0.0000 4 8 2.0244 -0.7088 -1.1472 5 6 2.8367 -1.8006 -0.6854 6 6 2.6582 -3.0147 -1.5991 7 6 4.3082 -1.3834 -0.6444 8 7 2.3527 -2.1138 0.6837 9 6 2.0615 -0.7605 1.2342 10 1 2.9686 -0.2919 1.6159 11 6 0.9923 -0.8374 2.3260 12 7 1.4822 -1.6641 3.4317 13 6 0.7043 -1.8741 4.5121 14 8 -0.4042 -1.3779 4.5688 15 7 1.1551 -2.6343 5.5297 16 6 0.3169 -2.9224 6.6128 17 6 0.3973 -4.1615 7.2439 18 6 -0.4270 -4.4569 8.3169 19 6 -1.3362 -3.5281 8.7713 20 6 -1.4287 -2.2719 8.1435 21 6 -2.3596 -1.3127 8.6049 22 1 -2.8453 -0.6506 7.9034 23 6 -2.6514 -1.2214 9.9704 24 7 -2.1300 -2.0790 10.8095 25 14 -3.7855 0.1252 10.5950 26 1 -5.1170 -0.0112 9.9519 27 1 -3.9319 0.0052 12.0679 28 1 -3.2085 1.4524 10.2619 29 6 -0.5856 -1.9748 7.0580 30 1 -0.3634 0.4881 0.9043 31 1 -0.3634 0.5391 -0.8749 32 1 -0.3633 -1.0273 -0.0295 33 1 2.9806 -2.7602 -2.6088 34 1 3.2589 -3.8433 -1.2239 35 1 1.6079 -3.3058 -1.6156 36 1 4.4234 -0.5220 0.0134 37 1 4.9101 -2.2107 -0.2685 38 1 4.6394 -1.1202 -1.6490 39 1 3.0686 -2.5772 1.2231 40 1 0.0850 -1.2804 1.9153 41 1 0.7736 0.1658 2.6916 42 1 2.3665 -2.0604 3.3863 43 1 2.0619 -2.9785 5.5131 44 1 1.1075 -4.8963 6.8948 45 1 -0.3564 -5.4206 8.7994 46 1 -1.9772 -3.7632 9.6082 47 1 -2.3320 -2.0154 11.7562 48 1 -0.6454 -1.0120 6.5723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415813603.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:35 Heat of formation + Delta-G solvation = -64.811857 kcal Electronic energy + Delta-G solvation = -28465.108773 eV Core-core repulsion = 24518.989159 eV Total energy + Delta-G solvation = -3946.119614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.71018 -41.13940 -39.13384 -36.64932 -36.02268 -35.03470 -34.80535 -33.70454 -31.68524 -30.64770 -29.99791 -28.32303 -27.85968 -27.18767 -25.12953 -23.33681 -22.68012 -21.95538 -21.64485 -21.11369 -19.57221 -19.12725 -18.08915 -17.58686 -17.11603 -16.89758 -16.42217 -16.28587 -16.25678 -15.97572 -15.60479 -15.35575 -14.89838 -14.68149 -14.60218 -14.20194 -13.87496 -13.83593 -13.73839 -13.52877 -13.33248 -13.18581 -12.96469 -12.91753 -12.80115 -12.78001 -12.73515 -12.57760 -12.23796 -12.13503 -12.03528 -11.87092 -11.53296 -11.19448 -11.00933 -10.79091 -10.66567 -10.10111 -9.78717 -9.27291 -8.67369 -8.43451 -6.38368 0.96953 1.05685 1.37032 1.48094 1.51684 1.66848 2.22073 2.24938 2.61847 2.82747 2.91765 3.24492 3.60134 3.65074 3.73067 3.89083 3.92136 4.05490 4.24362 4.40138 4.45665 4.51478 4.52653 4.65289 4.68781 4.75472 4.78522 4.84087 4.86123 4.97562 5.08380 5.09239 5.16172 5.17997 5.18773 5.21676 5.27519 5.38054 5.39708 5.47326 5.75417 5.87856 6.00303 6.08434 6.17896 6.21579 6.27260 6.41989 6.75179 7.00417 7.05034 7.12819 7.63243 8.44640 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.002289 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.247828 B =12229.000127 C =13231.437456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 H 0.101 0.899 4 O -0.381 6.381 5 C 0.244 3.756 6 C -0.131 4.131 7 C -0.188 4.188 8 N -0.664 5.664 9 C 0.036 3.964 10 H 0.093 0.907 11 C 0.158 3.842 12 N -0.719 5.719 13 C 0.695 3.305 14 O -0.619 6.619 15 N -0.668 5.668 16 C 0.167 3.833 17 C -0.236 4.236 18 C -0.099 4.099 19 C -0.187 4.187 20 C 0.080 3.920 21 C -0.505 4.505 22 H 0.059 0.941 23 C 0.030 3.970 24 N -0.839 5.839 25 Si 0.985 3.015 26 H -0.262 1.262 27 H -0.262 1.262 28 H -0.266 1.266 29 C -0.223 4.223 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.361 0.639 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.410 0.590 43 H 0.418 0.582 44 H 0.134 0.866 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.284 0.716 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.797 0.309 -20.095 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.119 0.881 4 O -0.299 6.299 5 C 0.116 3.884 6 C -0.189 4.189 7 C -0.247 4.247 8 N -0.301 5.301 9 C -0.074 4.074 10 H 0.111 0.889 11 C 0.033 3.967 12 N -0.376 5.376 13 C 0.395 3.605 14 O -0.498 6.498 15 N -0.317 5.317 16 C 0.073 3.927 17 C -0.257 4.257 18 C -0.117 4.117 19 C -0.207 4.207 20 C 0.077 3.923 21 C -0.536 4.536 22 H 0.078 0.922 23 C -0.181 4.181 24 N -0.467 5.467 25 Si 0.806 3.194 26 H -0.187 1.187 27 H -0.186 1.186 28 H -0.191 1.191 29 C -0.245 4.245 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.180 0.820 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.246 0.754 43 H 0.255 0.745 44 H 0.152 0.848 45 H 0.142 0.858 46 H 0.130 0.870 47 H 0.095 0.905 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.081 0.527 -20.273 24.689 hybrid contribution 0.940 0.685 0.762 1.390 sum 15.021 1.211 -19.511 24.653 Atomic orbital electron populations 1.22151 0.94536 1.02404 1.02838 1.22837 0.95090 0.96067 0.83305 0.88081 1.88739 1.67750 1.43463 1.29994 1.23235 0.89642 0.87201 0.88352 1.21708 1.02755 0.95571 0.98883 1.22727 0.95086 1.02924 1.03970 1.64509 1.45294 1.17073 1.03245 1.23363 0.98499 0.90966 0.94569 0.88888 1.21248 0.96748 0.94498 0.84166 1.44694 1.19720 1.55826 1.17383 1.16167 0.84111 0.79594 0.80636 1.90957 1.22231 1.55260 1.81359 1.42255 1.16539 1.54216 1.18671 1.17289 0.93773 0.93496 0.88190 1.20535 1.07217 0.95511 1.02480 1.20902 0.95768 0.98676 0.96388 1.21564 1.02527 0.93502 1.03121 1.17894 0.91247 0.92477 0.90646 1.19641 1.23141 1.17245 0.93547 0.92242 1.26663 0.96290 0.98769 0.96417 1.69816 1.38388 1.33882 1.04625 0.85219 0.78433 0.78000 0.77747 1.18682 1.18599 1.19078 1.21233 1.01942 0.98892 1.02409 0.90741 0.91522 0.92935 0.91101 0.89656 0.92875 0.92032 0.89377 0.90906 0.82026 0.92058 0.91559 0.75372 0.74459 0.84781 0.85787 0.87048 0.90493 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.28 71.98 0.60 -2.41 16 2 C 0.09 1.38 4.24 31.07 0.13 1.51 16 3 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 4 O -0.38 -7.10 10.53 -148.98 -1.57 -8.67 16 5 C 0.24 3.33 1.46 44.60 0.07 3.40 16 6 C -0.13 -1.69 9.29 71.98 0.67 -1.02 16 7 C -0.19 -1.68 8.86 71.98 0.64 -1.05 16 8 N -0.66 -9.06 6.85 -550.12 -3.77 -12.83 16 9 C 0.04 0.52 2.84 44.99 0.13 0.65 16 10 H 0.09 0.95 7.54 -2.39 -0.02 0.93 16 11 C 0.16 3.40 4.18 86.38 0.36 3.76 16 12 N -0.72 -16.33 5.48 -478.54 -2.62 -18.95 16 13 C 0.69 24.55 8.40 179.05 1.50 26.05 16 14 O -0.62 -29.27 13.81 -3.98 -0.05 -29.33 16 15 N -0.67 -22.55 5.34 -317.33 -1.69 -24.25 16 16 C 0.17 7.47 6.28 38.09 0.24 7.71 16 17 C -0.24 -9.80 9.97 22.58 0.23 -9.57 16 18 C -0.10 -4.51 10.02 22.20 0.22 -4.29 16 19 C -0.19 -10.24 8.67 22.75 0.20 -10.04 16 20 C 0.08 4.69 5.55 -21.31 -0.12 4.57 16 21 C -0.50 -30.03 9.04 23.46 0.21 -29.81 16 22 H 0.06 3.55 7.85 -2.91 -0.02 3.53 16 23 C 0.03 1.65 5.42 85.25 0.46 2.11 16 24 N -0.84 -46.00 10.60 21.82 0.23 -45.76 16 25 Si 0.99 41.58 29.56 68.60 2.03 43.61 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 C -0.22 -12.21 8.43 22.85 0.19 -12.01 16 30 H 0.07 1.38 6.78 -2.39 -0.02 1.36 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.16 7.55 -2.38 -0.02 1.14 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.54 7.20 -2.39 -0.02 0.52 16 37 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.36 3.24 8.37 -89.69 -0.75 2.48 16 40 H 0.06 1.63 6.36 -2.39 -0.02 1.62 16 41 H 0.07 1.54 7.83 -2.39 -0.02 1.52 16 42 H 0.41 5.89 8.19 -92.70 -0.76 5.13 16 43 H 0.42 9.80 8.84 -92.70 -0.82 8.98 16 44 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 45 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 46 H 0.11 6.38 6.14 -2.91 -0.02 6.37 16 47 H 0.28 14.11 8.30 -92.70 -0.77 13.34 16 48 H 0.09 5.27 6.25 -2.91 -0.02 5.25 16 Total: -1.00 -76.25 384.73 -3.05 -79.29 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -1.32 Total: 37.33 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.73 Total: -20.44 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -7.85 Total: -101.79 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.62 Total: -37.99 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -76.25 -3.05 -79.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415813603.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.480 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds