Wall clock time and date at job start Tue Mar 31 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00034 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00186 * 185.27302 * 4 2 1 6 6 C 1.38897 * 120.07107 * 213.47404 * 5 4 2 7 7 C 1.38087 * 119.92907 * 180.27428 * 6 5 4 8 8 C 1.38304 * 120.06997 * 359.77409 * 7 6 5 9 9 C 1.38254 * 120.14225 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.96717 * 179.97438 * 9 8 7 11 11 H 1.08992 * 109.47433 * 200.02148 * 10 9 8 12 12 C 1.52999 * 109.47174 * 80.01809 * 10 9 8 13 13 N 1.46503 * 109.46860 * 320.02121 * 10 9 8 14 14 C 1.34775 * 120.00128 * 205.00094 * 13 10 9 15 15 O 1.21281 * 119.99896 * 359.97438 * 14 13 10 16 16 C 1.50698 * 120.00281 * 179.97438 * 14 13 10 17 17 H 1.09000 * 109.47208 * 320.00046 * 16 14 13 18 18 N 1.46897 * 109.47359 * 200.00234 * 16 14 13 19 19 C 1.53001 * 109.46931 * 79.99861 * 16 14 13 20 20 C 1.53004 * 109.46960 * 184.99810 * 19 16 14 21 21 C 1.50698 * 109.47005 * 179.97438 * 20 19 16 22 22 H 1.08008 * 120.00234 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00048 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00089 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00283 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47037 * 90.00180 * 25 23 21 27 27 H 1.48496 * 109.47606 * 210.00314 * 25 23 21 28 28 H 1.48504 * 109.47191 * 330.00802 * 25 23 21 29 29 C 1.38138 * 120.07201 * 0.02562 * 9 8 7 30 30 H 1.09000 * 109.46776 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46869 * 299.99956 * 1 2 3 32 32 H 1.08998 * 109.47042 * 59.99677 * 1 2 3 33 33 H 0.97006 * 119.99678 * 5.27373 * 4 2 1 34 34 H 1.08006 * 120.03486 * 359.97438 * 6 5 4 35 35 H 1.07996 * 119.96737 * 179.74563 * 7 6 5 36 36 H 1.08000 * 119.92596 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47238 * 60.00498 * 12 10 9 38 38 H 1.09003 * 109.47063 * 180.02562 * 12 10 9 39 39 H 1.09003 * 109.47193 * 299.99951 * 12 10 9 40 40 H 0.97001 * 120.00062 * 24.99660 * 13 10 9 41 41 H 1.00904 * 110.99863 * 300.00072 * 18 16 14 42 42 H 1.00901 * 111.00308 * 63.95090 * 18 16 14 43 43 H 1.08997 * 109.47368 * 305.00023 * 19 16 14 44 44 H 1.09001 * 109.46998 * 65.00695 * 19 16 14 45 45 H 1.08997 * 109.47254 * 300.00283 * 20 19 16 46 46 H 1.09001 * 109.46542 * 60.00606 * 20 19 16 47 47 H 0.97003 * 120.00398 * 180.02562 * 24 23 21 48 48 H 1.07998 * 120.03321 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1108 6 6 4.3241 -2.1418 -0.5405 7 6 5.7001 -2.1450 -0.4239 8 6 6.3334 -1.1789 0.3365 9 6 5.5917 -0.2068 0.9818 10 6 6.2858 0.8438 1.8098 11 1 5.5741 1.2856 2.5071 12 6 6.8419 1.9328 0.8902 13 7 7.3848 0.2284 2.5580 14 6 7.8195 0.7919 3.7025 15 8 7.3013 1.8088 4.1127 16 6 8.9496 0.1586 4.4724 17 1 8.8346 -0.9252 4.4610 18 7 8.9260 0.6388 5.8605 19 6 10.2831 0.5368 3.8245 20 6 11.4209 -0.2050 4.5289 21 6 12.7342 0.1671 3.8903 22 1 12.7553 0.8633 3.0648 23 6 13.9089 -0.3805 4.3604 24 7 13.8833 -1.2279 5.3659 25 14 15.5370 0.0811 3.5694 26 1 16.1041 1.2673 4.2599 27 1 16.4834 -1.0575 3.6835 28 1 15.3178 0.4008 2.1358 29 6 4.2149 -0.1981 0.8692 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6990 -2.0055 -0.0781 34 1 3.8301 -2.8973 -1.1335 35 1 6.2823 -2.9030 -0.9267 36 1 7.4096 -1.1838 0.4263 37 1 6.0243 2.3907 0.3335 38 1 7.3443 2.6924 1.4891 39 1 7.5537 1.4910 0.1929 40 1 7.7995 -0.5847 2.2297 41 1 9.0310 1.6416 5.8980 42 1 8.0825 0.3458 6.3303 43 1 10.2664 0.2598 2.7705 44 1 10.4392 1.6117 3.9153 45 1 11.4375 0.0721 5.5829 46 1 11.2648 -1.2799 4.4381 47 1 14.7098 -1.6129 5.6969 48 1 3.6361 0.5613 1.3739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424088234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:48 Heat of formation + Delta-G solvation = -62.135154 kcal Electronic energy + Delta-G solvation = -27951.293601 eV Core-core repulsion = 24005.290058 eV Total energy + Delta-G solvation = -3946.003543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.99340 -39.97275 -38.84850 -36.21193 -35.13443 -34.63139 -32.77603 -31.82715 -31.29124 -30.06454 -29.51329 -28.80105 -26.40176 -24.43479 -23.44524 -23.30611 -21.24334 -20.99415 -20.31236 -19.74766 -18.09906 -17.38086 -17.02491 -16.49257 -16.33940 -16.02829 -15.76105 -15.41827 -14.89338 -14.72809 -14.40727 -14.37153 -14.11939 -13.87952 -13.65033 -13.52198 -13.32797 -13.14740 -12.83883 -12.52707 -12.37407 -12.29396 -12.01537 -11.97548 -11.68779 -11.50339 -11.10417 -10.88348 -10.76276 -10.63933 -10.52442 -10.29961 -10.08234 -9.77356 -9.34409 -9.19947 -8.98968 -8.95328 -8.48402 -8.31933 -8.16982 -5.92058 -3.94067 0.90260 1.08164 2.13458 2.59125 2.82892 3.24655 3.36190 3.42379 3.45315 3.55878 4.16563 4.38601 4.51569 4.58210 4.63259 4.80670 4.84600 4.90536 4.96696 5.06870 5.11824 5.22348 5.23163 5.30376 5.36414 5.43434 5.57470 5.59406 5.71656 5.84795 5.87824 5.93846 5.99439 6.12303 6.19856 6.27234 6.46176 6.57947 6.68928 6.69399 6.89073 7.11561 7.41719 7.62291 7.64542 7.78317 7.83572 7.98495 8.15372 8.36923 8.50530 9.13986 9.68959 11.18784 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002148 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.305160 B =13029.265251 C =13659.092982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.523 6.523 4 N -0.675 5.675 5 C 0.144 3.856 6 C -0.147 4.147 7 C -0.094 4.094 8 C -0.127 4.127 9 C -0.068 4.068 10 C 0.182 3.818 11 H 0.093 0.907 12 C -0.157 4.157 13 N -0.725 5.725 14 C 0.485 3.515 15 O -0.553 6.553 16 C 0.079 3.921 17 H 0.097 0.903 18 N -0.807 5.807 19 C -0.095 4.095 20 C 0.031 3.969 21 C -0.521 4.521 22 H 0.052 0.948 23 C 0.057 3.943 24 N -0.892 5.892 25 Si 0.889 3.111 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.275 1.275 29 C -0.109 4.109 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.411 0.589 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.402 0.598 41 H 0.348 0.652 42 H 0.333 0.667 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.259 0.741 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.277 -4.117 -13.058 31.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.397 6.397 4 N -0.321 5.321 5 C 0.050 3.950 6 C -0.167 4.167 7 C -0.113 4.113 8 C -0.146 4.146 9 C -0.070 4.070 10 C 0.077 3.923 11 H 0.111 0.889 12 C -0.215 4.215 13 N -0.378 5.378 14 C 0.271 3.729 15 O -0.431 6.431 16 C -0.037 4.037 17 H 0.115 0.885 18 N -0.334 5.334 19 C -0.133 4.133 20 C -0.006 4.006 21 C -0.560 4.560 22 H 0.070 0.930 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.717 3.283 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.200 1.200 29 C -0.130 4.130 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.247 0.753 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.237 0.763 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.512 -3.143 -12.509 30.385 hybrid contribution -0.055 -0.167 -1.067 1.081 sum -27.567 -3.309 -13.576 30.906 Atomic orbital electron populations 1.21862 0.90618 1.04574 1.05847 1.21064 0.90963 0.83187 0.75192 1.90785 1.70428 1.31162 1.47357 1.43700 1.05316 1.09941 1.73113 1.17670 0.82640 0.97502 0.97199 1.20887 0.94276 1.00417 1.01138 1.20941 0.93700 0.98414 0.98201 1.21003 1.00239 0.95093 0.98218 1.19834 0.93178 0.96095 0.97846 1.19725 0.88886 0.91211 0.92450 0.88911 1.22149 1.01519 0.98423 0.99453 1.46341 1.36506 1.29972 1.25015 1.22758 0.84693 0.84799 0.80673 1.90643 1.58705 1.24727 1.68984 1.21837 0.93510 0.99960 0.88425 0.88497 1.59008 1.43021 1.19249 1.12166 1.21655 0.92058 1.01196 0.98423 1.19017 0.90116 0.94649 0.96818 1.21283 0.91926 1.26055 1.16723 0.92991 1.24992 0.99001 0.95248 0.95129 1.69976 1.27201 1.30279 1.25723 0.86655 0.83975 0.77981 0.79709 1.20738 1.21314 1.20022 1.20913 0.93803 0.99411 0.98848 0.90305 0.88183 0.88326 0.75271 0.85709 0.85226 0.85524 0.91573 0.91451 0.92072 0.76271 0.83829 0.85494 0.92840 0.92835 0.94665 0.96891 0.93131 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.39 36.01 0.37 -0.17 16 2 C 0.51 3.96 7.68 -10.98 -0.08 3.87 16 3 O -0.52 -6.58 14.79 5.55 0.08 -6.50 16 4 N -0.67 -4.35 5.34 -9.86 -0.05 -4.40 16 5 C 0.14 1.32 6.28 -83.69 -0.53 0.80 16 6 C -0.15 -1.14 9.96 -39.39 -0.39 -1.54 16 7 C -0.09 -0.78 10.04 -39.61 -0.40 -1.17 16 8 C -0.13 -1.23 9.05 -39.55 -0.36 -1.59 16 9 C -0.07 -0.76 4.95 -104.65 -0.52 -1.28 16 10 C 0.18 2.30 2.78 -69.08 -0.19 2.11 16 11 H 0.09 1.32 7.44 -51.93 -0.39 0.94 16 12 C -0.16 -1.97 9.46 37.16 0.35 -1.62 16 13 N -0.73 -9.53 5.03 -54.93 -0.28 -9.81 16 14 C 0.48 7.81 7.03 -10.99 -0.08 7.73 16 15 O -0.55 -10.38 15.91 5.56 0.09 -10.30 16 16 C 0.08 1.34 3.15 -68.87 -0.22 1.12 16 17 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 18 N -0.81 -13.87 8.44 -5.66 -0.05 -13.91 16 19 C -0.09 -1.93 4.78 -26.73 -0.13 -2.06 16 20 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 21 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 22 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 25 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 29 C -0.11 -1.24 8.28 -39.39 -0.33 -1.57 16 30 H 0.08 0.04 7.92 -51.93 -0.41 -0.37 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.41 1.10 8.66 -40.82 -0.35 0.75 16 34 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.13 1.11 6.91 -52.49 -0.36 0.75 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.40 4.57 6.87 -40.82 -0.28 4.29 16 41 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 42 H 0.33 5.00 9.06 -39.29 -0.36 4.65 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 48 H 0.13 1.70 6.39 -52.49 -0.34 1.36 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -36.25 401.93 -8.89 -45.14 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -7.42 Total: 11.39 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.04 Total: -8.25 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.36 Total: -54.37 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.17 Total: -16.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.25 -8.89 -45.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.994 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds