Wall clock time and date at job start Tue Mar 31 2020 18:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00034 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00186 * 185.27302 * 4 2 1 6 6 C 1.38897 * 120.07107 * 213.47404 * 5 4 2 7 7 C 1.38087 * 119.92907 * 180.27428 * 6 5 4 8 8 C 1.38304 * 120.06997 * 359.77409 * 7 6 5 9 9 C 1.38254 * 120.14225 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.96717 * 179.97438 * 9 8 7 11 11 H 1.08992 * 109.47433 * 200.02148 * 10 9 8 12 12 C 1.52999 * 109.47174 * 80.01809 * 10 9 8 13 13 N 1.46503 * 109.46860 * 320.02121 * 10 9 8 14 14 C 1.34775 * 120.00128 * 205.00094 * 13 10 9 15 15 O 1.21281 * 119.99896 * 359.97438 * 14 13 10 16 16 C 1.50698 * 120.00281 * 179.97438 * 14 13 10 17 17 H 1.09000 * 109.47208 * 320.00046 * 16 14 13 18 18 N 1.46897 * 109.47359 * 200.00234 * 16 14 13 19 19 C 1.53001 * 109.46931 * 79.99861 * 16 14 13 20 20 C 1.53004 * 109.46960 * 184.99810 * 19 16 14 21 21 C 1.50698 * 109.47005 * 179.97438 * 20 19 16 22 22 H 1.08008 * 120.00234 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00048 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00089 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00283 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47037 * 90.00180 * 25 23 21 27 27 H 1.48496 * 109.47606 * 210.00314 * 25 23 21 28 28 H 1.48504 * 109.47191 * 330.00802 * 25 23 21 29 29 C 1.38138 * 120.07201 * 0.02562 * 9 8 7 30 30 H 1.09000 * 109.46776 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46869 * 299.99956 * 1 2 3 32 32 H 1.08998 * 109.47042 * 59.99677 * 1 2 3 33 33 H 0.97006 * 119.99678 * 5.27373 * 4 2 1 34 34 H 1.08006 * 120.03486 * 359.97438 * 6 5 4 35 35 H 1.07996 * 119.96737 * 179.74563 * 7 6 5 36 36 H 1.08000 * 119.92596 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47238 * 60.00498 * 12 10 9 38 38 H 1.09003 * 109.47063 * 180.02562 * 12 10 9 39 39 H 1.09003 * 109.47193 * 299.99951 * 12 10 9 40 40 H 0.97001 * 120.00062 * 24.99660 * 13 10 9 41 41 H 1.00904 * 110.99863 * 300.00072 * 18 16 14 42 42 H 1.00901 * 111.00308 * 63.95090 * 18 16 14 43 43 H 1.08997 * 109.47368 * 305.00023 * 19 16 14 44 44 H 1.09001 * 109.46998 * 65.00695 * 19 16 14 45 45 H 1.08997 * 109.47254 * 300.00283 * 20 19 16 46 46 H 1.09001 * 109.46542 * 60.00606 * 20 19 16 47 47 H 0.97003 * 120.00398 * 180.02562 * 24 23 21 48 48 H 1.07998 * 120.03321 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1108 6 6 4.3241 -2.1418 -0.5405 7 6 5.7001 -2.1450 -0.4239 8 6 6.3334 -1.1789 0.3365 9 6 5.5917 -0.2068 0.9818 10 6 6.2858 0.8438 1.8098 11 1 5.5741 1.2856 2.5071 12 6 6.8419 1.9328 0.8902 13 7 7.3848 0.2284 2.5580 14 6 7.8195 0.7919 3.7025 15 8 7.3013 1.8088 4.1127 16 6 8.9496 0.1586 4.4724 17 1 8.8346 -0.9252 4.4610 18 7 8.9260 0.6388 5.8605 19 6 10.2831 0.5368 3.8245 20 6 11.4209 -0.2050 4.5289 21 6 12.7342 0.1671 3.8903 22 1 12.7553 0.8633 3.0648 23 6 13.9089 -0.3805 4.3604 24 7 13.8833 -1.2279 5.3659 25 14 15.5370 0.0811 3.5694 26 1 16.1041 1.2673 4.2599 27 1 16.4834 -1.0575 3.6835 28 1 15.3178 0.4008 2.1358 29 6 4.2149 -0.1981 0.8692 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6990 -2.0055 -0.0781 34 1 3.8301 -2.8973 -1.1335 35 1 6.2823 -2.9030 -0.9267 36 1 7.4096 -1.1838 0.4263 37 1 6.0243 2.3907 0.3335 38 1 7.3443 2.6924 1.4891 39 1 7.5537 1.4910 0.1929 40 1 7.7995 -0.5847 2.2297 41 1 9.0310 1.6416 5.8980 42 1 8.0825 0.3458 6.3303 43 1 10.2664 0.2598 2.7705 44 1 10.4392 1.6117 3.9153 45 1 11.4375 0.0721 5.5829 46 1 11.2648 -1.2799 4.4381 47 1 14.7098 -1.6129 5.6969 48 1 3.6361 0.5613 1.3739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424088234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:47 Heat of formation + Delta-G solvation = -89.152143 kcal Electronic energy + Delta-G solvation = -27952.465146 eV Core-core repulsion = 24005.290058 eV Total energy + Delta-G solvation = -3947.175088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.72444 -41.12124 -39.69345 -37.26733 -36.62853 -35.46772 -34.80166 -32.80461 -31.91788 -31.82247 -30.41274 -29.35443 -28.12964 -25.87065 -24.60666 -24.12032 -22.53302 -21.90106 -21.47546 -21.02015 -19.08342 -18.37910 -18.09686 -17.92927 -17.23586 -17.13407 -16.87614 -16.52103 -16.38154 -16.00864 -15.57896 -15.40113 -15.10772 -14.95067 -14.75854 -14.47131 -14.27368 -14.22652 -13.79973 -13.62199 -13.44435 -13.38541 -13.28825 -13.06385 -12.80221 -12.77724 -12.55223 -12.50178 -12.24280 -11.99076 -11.75729 -11.64047 -11.46067 -11.24014 -10.98894 -10.97259 -10.47774 -10.28496 -9.83129 -9.61199 -9.15461 -8.12412 -6.22393 0.19615 0.34684 1.42401 1.43767 1.49403 1.54444 1.54855 2.05708 2.15509 2.45629 2.79581 3.20530 3.43631 3.56606 3.80046 3.83644 3.92330 4.09473 4.14281 4.18253 4.20348 4.32069 4.32961 4.42621 4.54901 4.57644 4.61981 4.63903 4.79383 4.81103 4.93769 4.96271 5.07063 5.11119 5.25879 5.27249 5.32456 5.33203 5.48598 5.58824 5.62139 5.86219 6.00230 6.00360 6.09091 6.32019 6.41196 6.43097 6.52575 6.96106 7.10782 7.11821 7.45457 8.98693 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002148 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.305160 B =13029.265251 C =13659.092982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.500 3.500 3 O -0.579 6.579 4 N -0.661 5.661 5 C 0.135 3.865 6 C -0.138 4.138 7 C -0.092 4.092 8 C -0.135 4.135 9 C -0.080 4.080 10 C 0.187 3.813 11 H 0.070 0.930 12 C -0.151 4.151 13 N -0.709 5.709 14 C 0.491 3.509 15 O -0.581 6.581 16 C 0.087 3.913 17 H 0.111 0.889 18 N -0.818 5.818 19 C -0.081 4.081 20 C 0.040 3.960 21 C -0.542 4.542 22 H 0.055 0.945 23 C 0.001 3.999 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.264 1.264 29 C -0.131 4.131 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.431 0.569 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.345 0.655 42 H 0.346 0.654 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.005 0.995 46 H -0.004 1.004 47 H 0.262 0.738 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.108 -5.922 -15.345 33.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.291 3.709 3 O -0.458 6.458 4 N -0.309 5.309 5 C 0.041 3.959 6 C -0.158 4.158 7 C -0.110 4.110 8 C -0.154 4.154 9 C -0.081 4.081 10 C 0.082 3.918 11 H 0.088 0.912 12 C -0.209 4.209 13 N -0.362 5.362 14 C 0.276 3.724 15 O -0.461 6.461 16 C -0.029 4.029 17 H 0.129 0.871 18 N -0.346 5.346 19 C -0.120 4.120 20 C 0.002 3.998 21 C -0.580 4.580 22 H 0.074 0.926 23 C -0.197 4.197 24 N -0.569 5.569 25 Si 0.784 3.216 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.188 1.188 29 C -0.151 4.151 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.271 0.729 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.153 0.847 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.251 0.749 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.014 0.986 47 H 0.070 0.930 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -28.384 -5.011 -14.826 32.413 hybrid contribution 0.134 0.337 -0.368 0.517 sum -28.251 -4.673 -15.194 32.416 Atomic orbital electron populations 1.21900 0.86856 1.07025 1.06214 1.21959 0.92753 0.82539 0.73685 1.90765 1.71862 1.33201 1.49993 1.43673 1.04425 1.10730 1.72069 1.17852 0.84064 0.97204 0.96827 1.21266 0.94216 1.00118 1.00179 1.21311 0.94222 0.98192 0.97309 1.21161 1.00668 0.95115 0.98435 1.19645 0.93190 0.96531 0.98770 1.19636 0.88164 0.91906 0.92110 0.91190 1.22078 1.01671 0.97911 0.99254 1.46204 1.36121 1.29913 1.23923 1.22442 0.84433 0.84312 0.81208 1.90638 1.59699 1.25962 1.69841 1.21645 0.92176 1.00733 0.88329 0.87096 1.58994 1.44014 1.19128 1.12509 1.21396 0.92006 0.99624 0.98960 1.18827 0.91435 0.94030 0.95471 1.21726 0.93324 1.26040 1.16952 0.92642 1.25894 1.02992 0.95121 0.95645 1.70105 1.28328 1.31376 1.27111 0.85545 0.79146 0.77735 0.79173 1.20323 1.20707 1.18782 1.20842 0.93948 1.00100 1.00247 0.86838 0.87965 0.87613 0.72898 0.82335 0.82500 0.84693 0.91252 0.93451 0.90940 0.74942 0.84150 0.84092 0.91284 0.93992 0.97637 0.98588 0.92962 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.39 71.24 0.74 0.01 16 2 C 0.50 7.49 7.68 87.66 0.67 8.17 16 3 O -0.58 -15.25 14.79 -3.07 -0.05 -15.30 16 4 N -0.66 -7.41 5.34 -303.50 -1.62 -9.03 16 5 C 0.13 2.31 6.28 38.15 0.24 2.55 16 6 C -0.14 -1.72 9.96 22.39 0.22 -1.50 16 7 C -0.09 -1.24 10.04 22.25 0.22 -1.02 16 8 C -0.13 -2.40 9.05 22.29 0.20 -2.20 16 9 C -0.08 -1.79 4.95 -19.88 -0.10 -1.89 16 10 C 0.19 4.85 2.78 44.24 0.12 4.97 16 11 H 0.07 2.14 7.44 -2.39 -0.02 2.12 16 12 C -0.15 -3.87 9.46 71.98 0.68 -3.19 16 13 N -0.71 -18.46 5.03 -446.10 -2.24 -20.70 16 14 C 0.49 15.86 7.03 87.66 0.62 16.47 16 15 O -0.58 -22.34 15.91 -3.03 -0.05 -22.39 16 16 C 0.09 2.95 3.15 44.17 0.14 3.09 16 17 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 18 N -0.82 -28.50 8.44 -171.81 -1.45 -29.95 16 19 C -0.08 -3.31 4.78 30.60 0.15 -3.17 16 20 C 0.04 2.06 4.86 29.85 0.15 2.21 16 21 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 22 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 23 C 0.00 0.07 5.46 84.65 0.46 0.54 16 24 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 25 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 29 C -0.13 -3.03 8.28 22.39 0.19 -2.85 16 30 H 0.11 -0.29 7.92 -2.39 -0.02 -0.31 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.43 1.04 8.66 -92.70 -0.80 0.23 16 34 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.14 2.10 6.91 -2.91 -0.02 2.08 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.41 8.90 6.87 -92.71 -0.64 8.26 16 41 H 0.34 12.36 8.58 -89.69 -0.77 11.59 16 42 H 0.35 10.44 9.06 -89.69 -0.81 9.62 16 43 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 46 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 48 H 0.11 3.05 6.39 -2.91 -0.02 3.03 16 Total: -1.00 -81.07 401.93 -0.17 -81.24 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -2.01 Total: 34.35 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 4.93 Total: -8.44 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -5.03 Total: -116.12 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.09 Total: -37.69 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -81.07 -0.17 -81.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.909 kcal (2) G-P(sol) polarization free energy of solvation -81.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds