Wall clock time and date at job start Tue Mar 31 2020 17:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00094 * 2 1 4 4 C 1.52992 * 109.47292 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47154 * 65.00151 * 4 3 2 6 6 C 1.37103 * 119.99829 * 269.99880 * 5 4 3 7 7 H 1.07998 * 119.99609 * 144.59321 * 6 5 4 8 8 C 1.38952 * 119.99975 * 324.59850 * 6 5 4 9 9 N 1.31406 * 120.00225 * 339.00096 * 8 6 5 10 10 Si 1.86800 * 119.99959 * 159.00010 * 8 6 5 11 11 H 1.48503 * 109.47037 * 89.99957 * 10 8 6 12 12 H 1.48498 * 109.47499 * 210.00062 * 10 8 6 13 13 H 1.48506 * 109.46874 * 330.00191 * 10 8 6 14 14 C 1.34776 * 120.00256 * 90.00166 * 5 4 3 15 15 O 1.21290 * 119.99825 * 4.95772 * 14 5 4 16 16 C 1.50698 * 119.99989 * 184.96656 * 14 5 4 17 17 H 1.08999 * 110.78531 * 28.67564 * 16 14 5 18 18 C 1.54940 * 110.71979 * 265.43398 * 16 14 5 19 19 N 1.48541 * 103.22533 * 204.22732 * 18 16 14 20 20 C 1.39003 * 110.99751 * 159.71996 * 19 18 16 21 21 C 1.39132 * 119.70920 * 302.47842 * 20 19 18 22 22 C 1.38298 * 119.10053 * 180.02562 * 21 20 19 23 23 C 1.38891 * 118.50092 * 0.25138 * 22 21 20 24 24 C 1.38019 * 119.32915 * 359.47815 * 23 22 21 25 25 N 1.31974 * 120.85828 * 0.53315 * 24 23 22 26 26 C 1.47896 * 105.81881 * 39.20686 * 19 18 16 27 27 C 1.53994 * 107.06052 * 334.67285 * 26 19 18 28 28 H 1.08994 * 110.31152 * 120.14268 * 27 26 19 29 29 C 1.53007 * 110.30602 * 242.30661 * 27 26 19 30 30 H 1.09004 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47257 * 300.00009 * 1 2 3 32 32 H 1.09003 * 109.47130 * 60.00154 * 1 2 3 33 33 H 1.09005 * 109.47200 * 60.00078 * 3 2 1 34 34 H 1.09001 * 109.47169 * 299.99756 * 3 2 1 35 35 H 1.09004 * 109.47440 * 304.99983 * 4 3 2 36 36 H 1.09007 * 109.47435 * 185.00190 * 4 3 2 37 37 H 0.97004 * 120.00201 * 184.46595 * 9 8 6 38 38 H 1.09002 * 110.66786 * 85.79895 * 18 16 14 39 39 H 1.08994 * 110.66828 * 322.66357 * 18 16 14 40 40 H 1.08005 * 120.45083 * 359.97438 * 21 20 19 41 41 H 1.07993 * 120.75064 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.33120 * 179.72518 * 23 22 21 43 43 H 1.07999 * 119.57051 * 180.24907 * 24 23 22 44 44 H 1.09001 * 109.91706 * 94.02191 * 26 19 18 45 45 H 1.08996 * 109.91851 * 215.31303 * 26 19 18 46 46 H 1.09006 * 109.46619 * 58.54590 * 29 27 26 47 47 H 1.09003 * 109.46798 * 178.53918 * 29 27 26 48 48 H 1.08991 * 109.47256 * 298.54468 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0979 -0.7991 -1.3345 7 1 3.8566 -1.3071 -2.2565 8 6 4.5313 -1.5270 -0.2331 9 7 5.2051 -0.9308 0.7247 10 14 4.1559 -3.3530 -0.1138 11 1 5.2552 -4.1265 -0.7451 12 1 4.0344 -3.7412 1.3144 13 1 2.8799 -3.6429 -0.8159 14 6 4.2634 1.3329 -2.3200 15 8 4.2433 2.5415 -2.2206 16 6 4.6087 0.6909 -3.6389 17 1 4.1233 -0.2802 -3.7353 18 6 6.1440 0.5544 -3.7968 19 7 6.3309 0.5032 -5.2696 20 6 7.6354 0.8338 -5.6178 21 6 8.1619 2.0625 -5.2319 22 6 9.4609 2.3786 -5.5856 23 6 10.1913 1.4539 -6.3210 24 6 9.6078 0.2515 -6.6653 25 7 8.3658 -0.0235 -6.3139 26 6 5.3694 1.4761 -5.8321 27 6 4.2211 1.6157 -4.8156 28 1 4.1407 2.6479 -4.4750 29 6 2.9013 1.1568 -5.4391 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9784 2.1765 0.0903 37 1 5.5634 -1.4502 1.4614 38 1 6.4983 -0.3656 -3.3320 39 1 6.6527 1.4208 -3.3743 40 1 7.5639 2.7603 -4.6644 41 1 9.8962 3.3249 -5.3004 42 1 11.2067 1.6721 -6.6169 43 1 10.1735 -0.4720 -7.2336 44 1 5.8575 2.4401 -5.9754 45 1 4.9818 1.1083 -6.7820 46 1 2.9938 0.1202 -5.7633 47 1 2.1035 1.2368 -4.7007 48 1 2.6667 1.7864 -6.2973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:27 Heat of formation + Delta-G solvation = -14.897433 kcal Electronic energy + Delta-G solvation = -29978.143109 eV Core-core repulsion = 26034.187946 eV Total energy + Delta-G solvation = -3943.955162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66824 -39.19039 -37.74642 -36.77682 -34.69882 -33.33863 -32.39636 -31.54068 -30.28511 -29.54214 -28.32608 -25.82905 -25.69164 -24.69729 -23.71120 -23.22319 -22.06077 -20.88167 -19.88517 -18.91095 -17.68803 -16.69444 -16.44754 -16.15029 -15.72871 -15.47944 -15.32712 -14.70074 -14.59112 -14.30546 -14.26609 -13.99998 -13.84972 -13.59659 -13.21426 -13.14391 -12.95916 -12.78530 -12.19560 -11.97216 -11.88344 -11.68764 -11.52581 -11.43729 -11.15491 -11.08225 -10.96203 -10.70790 -10.60287 -10.32598 -10.27515 -10.19508 -9.88868 -9.80607 -9.66496 -9.12611 -8.96097 -8.86452 -8.45106 -8.19588 -7.46793 -6.28928 -3.93900 1.05259 1.30653 3.20573 3.30539 3.36862 3.63516 3.75144 3.87452 4.19430 4.51841 4.69237 4.78109 4.81922 4.89717 5.04929 5.07027 5.09959 5.24274 5.29790 5.42891 5.65259 5.66373 5.70491 5.73049 5.78384 5.82067 5.93537 5.97612 6.00107 6.02605 6.06331 6.11476 6.16322 6.20364 6.33434 6.40681 6.44362 6.46949 6.51671 6.59011 6.68008 6.74506 7.05944 7.31100 7.32882 7.57098 7.83157 8.02285 8.19268 8.41546 9.16231 9.53183 9.93638 10.73954 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003844 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.704955 B = 7283.197240 C = 8173.499163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.106 3.894 5 N -0.422 5.422 6 C -0.324 4.324 7 H 0.090 0.910 8 C 0.053 3.947 9 N -0.867 5.867 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.474 3.526 15 O -0.611 6.611 16 C -0.084 4.084 17 H 0.104 0.896 18 C 0.071 3.929 19 N -0.480 5.480 20 C 0.311 3.689 21 C -0.199 4.199 22 C -0.067 4.067 23 C -0.187 4.187 24 C 0.107 3.893 25 N -0.467 5.467 26 C 0.053 3.947 27 C -0.094 4.094 28 H 0.094 0.906 29 C -0.137 4.137 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.268 0.732 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 4.253 -9.166 10.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.018 4.018 5 N -0.138 5.138 6 C -0.451 4.451 7 H 0.107 0.893 8 C -0.152 4.152 9 N -0.504 5.504 10 Si 0.741 3.259 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.192 1.192 14 C 0.263 3.737 15 O -0.499 6.499 16 C -0.106 4.106 17 H 0.122 0.878 18 C -0.056 4.056 19 N -0.203 5.203 20 C 0.081 3.919 21 C -0.222 4.222 22 C -0.093 4.093 23 C -0.207 4.207 24 C -0.051 4.051 25 N -0.177 5.177 26 C -0.074 4.074 27 C -0.113 4.113 28 H 0.112 0.888 29 C -0.194 4.194 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.174 0.826 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.666 3.268 -9.310 10.007 hybrid contribution 0.198 0.839 0.785 1.166 sum 1.865 4.107 -8.525 9.645 Atomic orbital electron populations 1.22646 0.83580 1.01722 0.98739 1.88168 1.17196 1.27531 1.94984 1.23007 0.96531 0.84389 0.98342 1.21570 0.89251 0.99242 0.91705 1.43337 1.55093 1.06367 1.08985 1.19287 1.45190 0.80506 1.00158 0.89275 1.25185 0.94333 0.99802 0.95923 1.69784 1.31476 1.36702 1.12447 0.86133 0.79186 0.82980 0.77569 1.20604 1.20973 1.19233 1.20073 0.80620 0.86556 0.86476 1.90487 1.59103 1.14715 1.85547 1.21965 0.95466 1.00341 0.92819 0.87799 1.23117 0.95690 1.02513 0.84253 1.61670 1.00158 1.48308 1.10163 1.19908 0.91309 0.88278 0.92400 1.22687 0.97400 0.99308 1.02780 1.21479 0.93589 0.99273 0.94999 1.22110 1.01436 0.95858 1.01258 1.22674 0.90558 0.95311 0.96578 1.67347 1.06252 1.33216 1.10849 1.23047 0.92522 0.93040 0.98763 1.21999 0.94170 1.01383 0.93773 0.88799 1.21782 0.96530 1.01097 1.00002 0.90453 0.95243 0.95046 0.94379 0.94503 0.86238 0.91130 0.92126 0.88492 0.92997 0.84649 0.84998 0.84923 0.82632 0.93579 0.90018 0.92266 0.92528 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.62 10.18 -35.23 -0.36 -7.98 16 3 C 0.06 1.13 6.28 37.15 0.23 1.36 16 4 C 0.11 2.50 5.47 -4.05 -0.02 2.48 16 5 N -0.42 -10.32 2.52 -114.81 -0.29 -10.61 16 6 C -0.32 -8.09 8.24 -14.93 -0.12 -8.22 16 7 H 0.09 2.19 6.29 -52.49 -0.33 1.85 16 8 C 0.05 1.33 4.99 -17.47 -0.09 1.25 16 9 N -0.87 -22.77 11.28 55.50 0.63 -22.14 16 10 Si 0.91 20.24 29.60 -169.99 -5.03 15.21 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.47 11.08 6.77 -10.99 -0.07 11.01 16 15 O -0.61 -15.30 15.26 5.55 0.08 -15.22 16 16 C -0.08 -1.67 2.34 -89.91 -0.21 -1.88 16 17 H 0.10 2.12 6.01 -51.93 -0.31 1.81 16 18 C 0.07 1.37 5.83 -1.89 -0.01 1.35 16 19 N -0.48 -8.38 5.36 -169.24 -0.91 -9.29 16 20 C 0.31 5.14 5.85 -155.02 -0.91 4.23 16 21 C -0.20 -2.87 7.89 -39.23 -0.31 -3.18 16 22 C -0.07 -0.78 10.17 -39.32 -0.40 -1.18 16 23 C -0.19 -1.99 10.10 -39.42 -0.40 -2.39 16 24 C 0.11 1.32 11.17 -17.57 -0.20 1.12 16 25 N -0.47 -7.57 10.40 -12.44 -0.13 -7.70 16 26 C 0.05 0.82 6.16 -2.76 -0.02 0.80 16 27 C -0.09 -1.58 3.12 -89.26 -0.28 -1.86 16 28 H 0.09 1.72 6.87 -51.93 -0.36 1.37 16 29 C -0.14 -2.00 8.89 37.16 0.33 -1.67 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 3.05 5.34 -51.93 -0.28 2.77 16 36 H 0.07 1.67 7.36 -51.92 -0.38 1.29 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.05 1.03 6.52 -51.93 -0.34 0.69 16 40 H 0.14 1.96 7.04 -52.48 -0.37 1.59 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.05 0.67 6.66 -51.93 -0.35 0.33 16 45 H 0.08 1.17 7.68 -51.93 -0.40 0.77 16 46 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -30.23 385.71 -8.87 -39.10 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.32 Total: 7.99 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.36 Total: 4.83 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.70 Total: -49.75 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.27 Total: -23.20 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.23 -8.87 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.206 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds