Wall clock time and date at job start Tue Mar 31 2020 18:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47087 * 2 1 4 4 C 1.50699 * 109.46970 * 120.00116 * 2 1 3 5 5 C 1.38281 * 119.93447 * 79.71994 * 4 2 1 6 6 C 1.38115 * 120.07615 * 179.76578 * 5 4 2 7 7 C 1.38871 * 119.92385 * 0.51543 * 6 5 4 8 8 N 1.39937 * 120.06641 * 179.72542 * 7 6 5 9 9 C 1.34783 * 119.99881 * 213.28925 * 8 7 6 10 10 O 1.21584 * 119.99639 * 5.31797 * 9 8 7 11 11 N 1.34770 * 120.00077 * 185.31231 * 9 8 7 12 12 C 1.46496 * 119.99999 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47401 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00066 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99891 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47423 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47090 * 120.00394 * 17 15 13 20 20 H 1.48506 * 109.46868 * 240.00097 * 17 15 13 21 21 C 1.38864 * 119.86222 * 359.73925 * 7 6 5 22 22 C 1.38122 * 119.92992 * 0.02562 * 21 7 6 23 23 N 1.46899 * 109.47370 * 240.00026 * 2 1 3 24 24 C 1.47006 * 111.00195 * 183.63856 * 23 2 1 25 25 C 1.53097 * 109.26122 * 177.60454 * 24 23 2 26 26 O 1.43024 * 109.25412 * 56.85004 * 25 24 23 27 27 C 1.43013 * 113.73618 * 301.32756 * 26 25 24 28 28 C 1.47016 * 111.00204 * 59.99908 * 23 2 1 29 29 H 1.09001 * 109.47531 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47390 * 300.00038 * 1 2 3 31 31 H 1.09004 * 109.46968 * 60.00123 * 1 2 3 32 32 H 1.08010 * 119.95961 * 0.02562 * 5 4 2 33 33 H 1.07997 * 120.03924 * 180.25713 * 6 5 4 34 34 H 0.96996 * 120.00428 * 33.28503 * 8 7 6 35 35 H 0.97002 * 120.00149 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.47210 * 300.00208 * 12 11 9 37 37 H 1.09001 * 109.47151 * 60.00115 * 12 11 9 38 38 H 0.96999 * 120.00659 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.03599 * 179.97438 * 21 7 6 40 40 H 1.08000 * 119.96152 * 179.97438 * 22 21 7 41 41 H 1.09001 * 109.51106 * 297.54258 * 24 23 2 42 42 H 1.09002 * 109.51268 * 57.67186 * 24 23 2 43 43 H 1.08993 * 109.50942 * 296.91499 * 25 24 23 44 44 H 1.08999 * 109.51178 * 176.77911 * 25 24 23 45 45 H 1.09003 * 109.51031 * 298.73737 * 27 26 25 46 46 H 1.09003 * 109.54349 * 178.63130 * 27 26 25 47 47 H 1.08998 * 109.50666 * 302.33205 * 28 23 2 48 48 H 1.09000 * 109.49906 * 62.45478 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.0606 -2.0925 1.2660 6 6 2.5249 -2.7466 2.3904 7 6 2.9536 -2.0148 3.4901 8 7 3.4192 -2.6745 4.6330 9 6 3.2085 -2.1402 5.8523 10 8 2.5315 -1.1369 5.9676 11 7 3.7481 -2.7182 6.9437 12 6 3.5186 -2.1378 8.2690 13 6 4.2258 -2.9670 9.3099 14 1 4.7902 -3.8389 9.0137 15 6 4.1533 -2.6119 10.6402 16 7 3.4665 -1.5500 11.0009 17 14 5.0305 -3.6394 11.9302 18 1 5.7272 -4.7728 11.2706 19 1 6.0225 -2.7959 12.6441 20 1 4.0386 -4.1665 12.9017 21 6 2.9189 -0.6271 3.4533 22 6 2.4580 0.0211 2.3240 23 7 2.0197 -0.6925 -1.1994 24 6 3.4866 -0.7880 -1.1906 25 6 3.9494 -1.5667 -2.4248 26 8 3.4559 -0.9216 -3.6020 27 6 2.0305 -0.8122 -3.6439 28 6 1.5483 -0.0259 -2.4220 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7232 -2.6611 0.4119 33 1 2.5507 -3.8259 2.4159 34 1 3.8935 -3.5163 4.5477 35 1 4.2885 -3.5185 6.8516 36 1 3.9061 -1.1192 8.2917 37 1 2.4492 -2.1245 8.4797 38 1 3.4151 -1.3003 11.9368 39 1 3.2512 -0.0552 4.3070 40 1 2.4304 1.1003 2.2950 41 1 3.9167 0.2134 -1.2097 42 1 3.8123 -1.3074 -0.2893 43 1 3.5632 -2.5849 -2.3786 44 1 5.0388 -1.5909 -2.4526 45 1 1.5885 -1.8085 -3.6332 46 1 1.7314 -0.2912 -4.5534 47 1 0.4590 0.0110 -2.4196 48 1 1.9473 0.9877 -2.4607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488307382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:04 Heat of formation + Delta-G solvation = -39.880218 kcal Electronic energy + Delta-G solvation = -28080.346013 eV Core-core repulsion = 24135.307516 eV Total energy + Delta-G solvation = -3945.038497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.53483 -39.87540 -38.53190 -36.57136 -34.49825 -34.09807 -32.44131 -31.85299 -31.47590 -30.79668 -28.68797 -27.04599 -26.80764 -24.33900 -23.54919 -22.68906 -22.39248 -21.08078 -20.49086 -19.98368 -18.24946 -17.51410 -17.01238 -16.50051 -16.12867 -15.88238 -15.45290 -15.31820 -15.16207 -14.90153 -14.62382 -14.45322 -14.16184 -13.98820 -13.67106 -13.41160 -13.26349 -13.00035 -12.90808 -12.47887 -12.13395 -12.07362 -12.03798 -11.95583 -11.72647 -11.69653 -11.09494 -10.97844 -10.97226 -10.91722 -10.79424 -10.34533 -10.03224 -9.95554 -9.49935 -9.41357 -8.80007 -8.77917 -8.71040 -8.08148 -7.67671 -6.20210 -4.27263 1.38001 1.55104 3.15115 3.21306 3.29093 3.32267 3.36025 3.55105 3.63498 4.03678 4.28768 4.43479 4.56739 4.66086 4.79740 4.82626 4.87529 4.94176 4.96552 5.10650 5.14919 5.16197 5.18317 5.20939 5.30663 5.39885 5.45042 5.49824 5.57307 5.60359 5.63885 5.74800 5.79029 5.99660 6.15574 6.34770 6.46474 6.51085 6.66917 6.74439 6.80489 6.84182 7.02795 7.23573 7.36980 7.47153 7.48577 7.79438 7.95406 8.65461 8.80466 9.16320 9.40052 10.89979 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.001871 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.819574 B =14960.694808 C =15414.249006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.128 3.872 3 H 0.047 0.953 4 C -0.115 4.115 5 C -0.074 4.074 6 C -0.161 4.161 7 C 0.185 3.815 8 N -0.697 5.697 9 C 0.690 3.310 10 O -0.582 6.582 11 N -0.722 5.722 12 C 0.265 3.735 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.122 4.122 22 C -0.093 4.093 23 N -0.528 5.528 24 C 0.016 3.984 25 C 0.065 3.935 26 O -0.388 6.388 27 C 0.065 3.935 28 C 0.014 3.986 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.403 0.597 35 H 0.388 0.612 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.138 0.862 40 H 0.119 0.881 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -0.273 -28.624 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.021 3.979 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.093 4.093 6 C -0.182 4.182 7 C 0.089 3.911 8 N -0.344 5.344 9 C 0.390 3.610 10 O -0.459 6.459 11 N -0.374 5.374 12 C 0.145 3.855 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.143 4.143 22 C -0.112 4.112 23 N -0.254 5.254 24 C -0.112 4.112 25 C -0.012 4.012 26 O -0.307 6.307 27 C -0.013 4.013 28 C -0.114 4.114 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.237 0.763 35 H 0.221 0.779 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.156 0.844 40 H 0.137 0.863 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.108 0.892 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.801 0.355 -28.325 28.465 hybrid contribution 1.025 -0.545 1.119 1.613 sum -1.776 -0.190 -27.206 27.265 Atomic orbital electron populations 1.21884 0.93364 1.02963 1.01732 1.20456 0.95609 0.94663 0.87221 0.93474 1.19510 1.03176 0.93974 0.94950 1.20679 0.98000 0.93559 0.97080 1.20864 1.03596 0.99532 0.94209 1.17594 0.95851 0.91645 0.86027 1.42879 1.60826 1.26532 1.04197 1.16170 0.80938 0.83780 0.80121 1.90897 1.43527 1.26431 1.85068 1.45788 1.53348 1.31001 1.07222 1.19058 0.97300 0.94224 0.74956 1.21244 1.33136 1.12245 0.91577 0.91816 1.24949 0.95286 0.95260 0.98535 1.69981 1.39942 1.24719 1.17515 0.86339 0.79297 0.79965 0.81163 1.19652 1.20772 1.20775 1.21213 1.01323 0.93131 0.98620 1.20845 0.98424 0.99455 0.92500 1.62242 1.09789 1.51900 1.01460 1.22817 0.87936 1.00353 1.00106 1.22680 0.99232 0.95688 0.83646 1.87982 1.21154 1.80166 1.41374 1.22647 0.81300 1.00022 0.97281 1.22847 1.01519 0.96518 0.90538 0.91474 0.91685 0.92556 0.85353 0.86017 0.76270 0.77908 0.95495 0.95510 0.92441 0.84429 0.86329 0.94100 0.88777 0.92232 0.88540 0.92274 0.88639 0.89194 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.94 37.16 0.33 -0.83 16 2 C 0.13 1.17 2.27 -68.87 -0.16 1.01 16 3 H 0.05 0.44 8.00 -51.93 -0.42 0.03 16 4 C -0.11 -1.26 3.74 -104.59 -0.39 -1.66 16 5 C -0.07 -0.81 8.12 -39.61 -0.32 -1.13 16 6 C -0.16 -1.91 9.96 -39.39 -0.39 -2.31 16 7 C 0.19 2.72 6.28 -83.69 -0.53 2.20 16 8 N -0.70 -10.57 5.35 -14.23 -0.08 -10.65 16 9 C 0.69 13.94 8.30 -86.92 -0.72 13.22 16 10 O -0.58 -14.07 14.03 5.29 0.07 -13.99 16 11 N -0.72 -15.01 5.55 -66.41 -0.37 -15.38 16 12 C 0.27 6.97 5.43 -5.19 -0.03 6.94 16 13 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 14 H 0.06 1.59 7.60 -52.48 -0.40 1.20 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 17 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.12 -1.90 8.66 -39.39 -0.34 -2.24 16 22 C -0.09 -1.19 9.66 -39.61 -0.38 -1.57 16 23 N -0.53 -4.43 3.93 -227.73 -0.90 -5.33 16 24 C 0.02 0.14 5.24 -3.72 -0.02 0.12 16 25 C 0.06 0.50 7.01 37.21 0.26 0.76 16 26 O -0.39 -3.59 10.83 -35.23 -0.38 -3.97 16 27 C 0.06 0.45 7.01 37.21 0.26 0.71 16 28 C 0.01 0.10 5.34 -3.71 -0.02 0.08 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.38 6.35 -51.93 -0.33 0.05 16 32 H 0.13 1.25 7.72 -52.48 -0.41 0.84 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.40 4.65 8.83 -40.82 -0.36 4.28 16 35 H 0.39 6.80 8.34 -40.82 -0.34 6.46 16 36 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.14 2.50 6.41 -52.49 -0.34 2.16 16 40 H 0.12 1.34 8.03 -52.49 -0.42 0.91 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.86 6.10 -51.93 -0.32 0.54 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.54 6.19 -51.93 -0.32 0.22 16 48 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -32.54 385.88 -10.41 -42.96 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.43 Total: 7.95 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.86 Total: 2.07 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.60 Total: -56.45 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.31 Total: -17.97 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.54 -10.41 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488307382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.075 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds