Wall clock time and date at job start Tue Mar 31 2020 18:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47087 * 2 1 4 4 C 1.50699 * 109.46970 * 120.00116 * 2 1 3 5 5 C 1.38281 * 119.93447 * 79.71994 * 4 2 1 6 6 C 1.38115 * 120.07615 * 179.76578 * 5 4 2 7 7 C 1.38871 * 119.92385 * 0.51543 * 6 5 4 8 8 N 1.39937 * 120.06641 * 179.72542 * 7 6 5 9 9 C 1.34783 * 119.99881 * 213.28925 * 8 7 6 10 10 O 1.21584 * 119.99639 * 5.31797 * 9 8 7 11 11 N 1.34770 * 120.00077 * 185.31231 * 9 8 7 12 12 C 1.46496 * 119.99999 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47401 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00066 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99891 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47423 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47090 * 120.00394 * 17 15 13 20 20 H 1.48506 * 109.46868 * 240.00097 * 17 15 13 21 21 C 1.38864 * 119.86222 * 359.73925 * 7 6 5 22 22 C 1.38122 * 119.92992 * 0.02562 * 21 7 6 23 23 N 1.46899 * 109.47370 * 240.00026 * 2 1 3 24 24 C 1.47006 * 111.00195 * 183.63856 * 23 2 1 25 25 C 1.53097 * 109.26122 * 177.60454 * 24 23 2 26 26 O 1.43024 * 109.25412 * 56.85004 * 25 24 23 27 27 C 1.43013 * 113.73618 * 301.32756 * 26 25 24 28 28 C 1.47016 * 111.00204 * 59.99908 * 23 2 1 29 29 H 1.09001 * 109.47531 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47390 * 300.00038 * 1 2 3 31 31 H 1.09004 * 109.46968 * 60.00123 * 1 2 3 32 32 H 1.08010 * 119.95961 * 0.02562 * 5 4 2 33 33 H 1.07997 * 120.03924 * 180.25713 * 6 5 4 34 34 H 0.96996 * 120.00428 * 33.28503 * 8 7 6 35 35 H 0.97002 * 120.00149 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.47210 * 300.00208 * 12 11 9 37 37 H 1.09001 * 109.47151 * 60.00115 * 12 11 9 38 38 H 0.96999 * 120.00659 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.03599 * 179.97438 * 21 7 6 40 40 H 1.08000 * 119.96152 * 179.97438 * 22 21 7 41 41 H 1.09001 * 109.51106 * 297.54258 * 24 23 2 42 42 H 1.09002 * 109.51268 * 57.67186 * 24 23 2 43 43 H 1.08993 * 109.50942 * 296.91499 * 25 24 23 44 44 H 1.08999 * 109.51178 * 176.77911 * 25 24 23 45 45 H 1.09003 * 109.51031 * 298.73737 * 27 26 25 46 46 H 1.09003 * 109.54349 * 178.63130 * 27 26 25 47 47 H 1.08998 * 109.50666 * 302.33205 * 28 23 2 48 48 H 1.09000 * 109.49906 * 62.45478 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.0606 -2.0925 1.2660 6 6 2.5249 -2.7466 2.3904 7 6 2.9536 -2.0148 3.4901 8 7 3.4192 -2.6745 4.6330 9 6 3.2085 -2.1402 5.8523 10 8 2.5315 -1.1369 5.9676 11 7 3.7481 -2.7182 6.9437 12 6 3.5186 -2.1378 8.2690 13 6 4.2258 -2.9670 9.3099 14 1 4.7902 -3.8389 9.0137 15 6 4.1533 -2.6119 10.6402 16 7 3.4665 -1.5500 11.0009 17 14 5.0305 -3.6394 11.9302 18 1 5.7272 -4.7728 11.2706 19 1 6.0225 -2.7959 12.6441 20 1 4.0386 -4.1665 12.9017 21 6 2.9189 -0.6271 3.4533 22 6 2.4580 0.0211 2.3240 23 7 2.0197 -0.6925 -1.1994 24 6 3.4866 -0.7880 -1.1906 25 6 3.9494 -1.5667 -2.4248 26 8 3.4559 -0.9216 -3.6020 27 6 2.0305 -0.8122 -3.6439 28 6 1.5483 -0.0259 -2.4220 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7232 -2.6611 0.4119 33 1 2.5507 -3.8259 2.4159 34 1 3.8935 -3.5163 4.5477 35 1 4.2885 -3.5185 6.8516 36 1 3.9061 -1.1192 8.2917 37 1 2.4492 -2.1245 8.4797 38 1 3.4151 -1.3003 11.9368 39 1 3.2512 -0.0552 4.3070 40 1 2.4304 1.1003 2.2950 41 1 3.9167 0.2134 -1.2097 42 1 3.8123 -1.3074 -0.2893 43 1 3.5632 -2.5849 -2.3786 44 1 5.0388 -1.5909 -2.4526 45 1 1.5885 -1.8085 -3.6332 46 1 1.7314 -0.2912 -4.5534 47 1 0.4590 0.0110 -2.4196 48 1 1.9473 0.9877 -2.4607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488307382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:01 Heat of formation + Delta-G solvation = -63.255047 kcal Electronic energy + Delta-G solvation = -28081.359622 eV Core-core repulsion = 24135.307516 eV Total energy + Delta-G solvation = -3946.052106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.69189 -40.86939 -39.61239 -37.47187 -36.20513 -35.54260 -34.36918 -32.64978 -32.18780 -31.81407 -29.96278 -28.69319 -27.50865 -25.34598 -24.70866 -24.03533 -23.49460 -22.13735 -21.67703 -20.94536 -19.86849 -18.78821 -18.01660 -17.72332 -17.17333 -16.87069 -16.72862 -16.59982 -16.05721 -15.94505 -15.86941 -15.57751 -15.25731 -15.05724 -14.88194 -14.53723 -14.41094 -14.09205 -14.04147 -13.98303 -13.66562 -13.24573 -12.88473 -12.81947 -12.77712 -12.76171 -12.52566 -12.26444 -12.23099 -12.04370 -11.79147 -11.46615 -11.40813 -11.29229 -11.07894 -10.83387 -10.62054 -9.93429 -9.81577 -9.39189 -8.90048 -8.30200 -6.46715 0.32554 0.51158 1.43079 1.44554 1.57444 1.73272 2.09239 2.38016 2.68793 2.91636 3.01672 3.05215 3.39271 3.67252 3.96303 3.98543 4.05240 4.14020 4.19245 4.25422 4.27807 4.40050 4.46520 4.54277 4.61378 4.63604 4.69031 4.76665 4.78349 4.86158 4.93627 5.01532 5.04554 5.05387 5.15950 5.23310 5.32994 5.34999 5.38649 5.44539 5.59229 5.60811 5.66888 5.81413 5.99745 6.03821 6.13245 6.19014 6.23230 6.64566 7.15754 7.24038 7.58274 8.82252 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.001871 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.819574 B =14960.694808 C =15414.249006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.130 3.870 3 H 0.044 0.956 4 C -0.101 4.101 5 C -0.067 4.067 6 C -0.146 4.146 7 C 0.156 3.844 8 N -0.674 5.674 9 C 0.690 3.310 10 O -0.627 6.627 11 N -0.716 5.716 12 C 0.285 3.715 13 C -0.555 4.555 14 H 0.085 0.915 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.987 3.013 18 H -0.253 1.253 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.147 4.147 22 C -0.100 4.100 23 N -0.527 5.527 24 C 0.018 3.982 25 C 0.066 3.934 26 O -0.408 6.408 27 C 0.062 3.938 28 C 0.014 3.986 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.422 0.578 35 H 0.407 0.593 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.269 0.731 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.029 0.971 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -2.637 -30.800 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.022 3.978 3 H 0.062 0.938 4 C -0.103 4.103 5 C -0.086 4.086 6 C -0.166 4.166 7 C 0.061 3.939 8 N -0.324 5.324 9 C 0.391 3.609 10 O -0.508 6.508 11 N -0.369 5.369 12 C 0.162 3.838 13 C -0.593 4.593 14 H 0.103 0.897 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.810 3.190 18 H -0.176 1.176 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.168 4.168 22 C -0.119 4.119 23 N -0.252 5.252 24 C -0.110 4.110 25 C -0.011 4.011 26 O -0.327 6.327 27 C -0.014 4.014 28 C -0.113 4.113 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.261 0.739 35 H 0.243 0.757 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.123 0.877 45 H 0.083 0.917 46 H 0.130 0.870 47 H 0.124 0.876 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.522 -2.061 -30.586 30.759 hybrid contribution 0.888 0.272 1.609 1.857 sum -1.634 -1.789 -28.977 29.079 Atomic orbital electron populations 1.21857 0.92275 1.03127 1.02351 1.20439 0.96338 0.94282 0.86748 0.93770 1.19740 1.01284 0.94339 0.94907 1.20943 0.96893 0.93463 0.97259 1.21115 1.01766 1.00822 0.92929 1.17809 0.97971 0.91526 0.86607 1.42475 1.60402 1.26921 1.02565 1.16278 0.80275 0.83153 0.81231 1.90871 1.45404 1.28494 1.85998 1.45330 1.54107 1.31662 1.05797 1.18468 0.94680 0.92910 0.77781 1.21627 1.33093 1.12726 0.91835 0.89668 1.26067 0.95912 0.96425 1.01227 1.70142 1.41634 1.26832 1.18254 0.85082 0.77862 0.78399 0.77676 1.17596 1.20506 1.20472 1.21070 1.03262 0.93854 0.98572 1.20931 0.98529 1.00080 0.92339 1.62267 1.09582 1.51799 1.01566 1.22785 0.88086 0.99790 1.00340 1.22730 0.99881 0.95647 0.82840 1.87961 1.22497 1.80398 1.41864 1.22803 0.80261 1.00542 0.97832 1.22914 1.02405 0.96065 0.89949 0.91473 0.92436 0.90687 0.83145 0.83182 0.73916 0.75703 0.99399 0.99400 0.92216 0.88166 0.85592 0.95274 0.89354 0.91558 0.87651 0.91704 0.86977 0.87617 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.94 71.98 0.64 -1.31 16 2 C 0.13 2.13 2.27 44.17 0.10 2.23 16 3 H 0.04 0.77 8.00 -2.39 -0.02 0.75 16 4 C -0.10 -2.10 3.74 -19.84 -0.07 -2.18 16 5 C -0.07 -1.28 8.12 22.25 0.18 -1.10 16 6 C -0.15 -3.13 9.96 22.39 0.22 -2.91 16 7 C 0.16 4.56 6.28 38.15 0.24 4.80 16 8 N -0.67 -20.37 5.35 -317.18 -1.70 -22.06 16 9 C 0.69 28.93 8.30 179.05 1.49 30.41 16 10 O -0.63 -32.29 14.03 -3.98 -0.06 -32.35 16 11 N -0.72 -30.53 5.55 -482.30 -2.68 -33.20 16 12 C 0.28 15.68 5.43 85.63 0.46 16.15 16 13 C -0.55 -30.01 9.28 25.60 0.24 -29.77 16 14 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 15 C 0.00 0.19 5.46 84.66 0.46 0.65 16 16 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 17 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 18 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 C -0.15 -4.79 8.66 22.39 0.19 -4.60 16 22 C -0.10 -2.59 9.66 22.25 0.21 -2.38 16 23 N -0.53 -7.60 3.93 -874.41 -3.44 -11.04 16 24 C 0.02 0.28 5.24 86.32 0.45 0.73 16 25 C 0.07 0.90 7.01 72.01 0.50 1.40 16 26 O -0.41 -6.74 10.83 -148.98 -1.61 -8.35 16 27 C 0.06 0.71 7.01 72.01 0.50 1.21 16 28 C 0.01 0.17 5.34 86.31 0.46 0.63 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.79 6.35 -2.39 -0.02 0.77 16 32 H 0.15 2.33 7.72 -2.91 -0.02 2.30 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.42 9.11 8.83 -92.71 -0.82 8.29 16 35 H 0.41 14.05 8.34 -92.71 -0.77 13.28 16 36 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 37 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.10 4.01 6.41 -2.91 -0.02 3.99 16 40 H 0.13 2.96 8.03 -2.91 -0.02 2.94 16 41 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 1.45 6.10 -2.39 -0.01 1.44 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 47 H 0.11 0.92 6.19 -2.39 -0.01 0.90 16 48 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -74.21 385.88 -1.49 -75.70 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.61 Total: 28.95 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.29 Total: 13.97 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -7.53 Total: -122.02 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.67 Total: -40.70 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.21 -1.49 -75.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488307382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.441 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds