Wall clock time and date at job start Tue Mar 31 2020 17:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.06578 * 2 1 4 4 C 1.53997 * 109.91546 * 238.79929 * 2 1 3 5 5 H 1.09001 * 110.39249 * 120.46473 * 4 2 1 6 6 C 1.50700 * 110.30683 * 358.33590 * 4 2 1 7 7 O 1.21285 * 119.99962 * 275.56131 * 6 4 2 8 8 N 1.34776 * 119.99935 * 95.56502 * 6 4 2 9 9 C 1.39577 * 120.00136 * 180.27312 * 8 6 4 10 10 N 1.32271 * 119.72168 * 359.45216 * 9 8 6 11 11 C 1.31962 * 121.68496 * 179.71352 * 10 9 8 12 12 C 1.38088 * 120.95616 * 0.56290 * 11 10 9 13 13 C 1.38776 * 119.35298 * 359.72643 * 12 11 10 14 14 C 1.38803 * 118.44821 * 359.97438 * 13 12 11 15 15 O 1.35973 * 120.49449 * 180.02562 * 14 13 12 16 16 C 1.42905 * 117.00302 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47169 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47225 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00106 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00129 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00367 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00303 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47080 * 89.99715 * 22 20 18 24 24 H 1.48499 * 109.47662 * 210.00061 * 22 20 18 25 25 H 1.48504 * 109.46614 * 330.00137 * 22 20 18 26 26 C 1.54599 * 105.13715 * 239.41892 * 4 2 1 27 27 C 1.54932 * 102.92514 * 338.04455 * 26 4 2 28 28 N 1.47896 * 109.91788 * 121.20729 * 2 1 3 29 29 C 1.46895 * 111.00153 * 265.19372 * 28 2 1 30 30 H 1.08999 * 109.47105 * 183.82461 * 1 2 3 31 31 H 1.09006 * 109.46693 * 303.82221 * 1 2 3 32 32 H 1.08996 * 109.47002 * 63.82439 * 1 2 3 33 33 H 0.97006 * 120.00134 * 359.97438 * 8 6 4 34 34 H 1.08002 * 119.52284 * 180.26710 * 11 10 9 35 35 H 1.08000 * 120.32099 * 179.70433 * 12 11 10 36 36 H 1.08004 * 120.77322 * 180.02562 * 13 12 11 37 37 H 1.08999 * 109.46848 * 299.99786 * 16 15 14 38 38 H 1.08996 * 109.46701 * 59.99715 * 16 15 14 39 39 H 1.09000 * 109.46819 * 300.00396 * 17 16 15 40 40 H 1.09002 * 109.47247 * 59.99929 * 17 16 15 41 41 H 0.96995 * 120.00500 * 180.02562 * 21 20 18 42 42 H 1.09000 * 110.71805 * 96.39977 * 26 4 2 43 43 H 1.09000 * 110.72125 * 219.67960 * 26 4 2 44 44 H 1.08996 * 110.67207 * 155.84551 * 27 26 4 45 45 H 1.08998 * 110.66421 * 278.81296 * 27 26 4 46 46 H 1.09007 * 109.47486 * 302.47940 * 29 28 2 47 47 H 1.08999 * 109.47096 * 62.47691 * 29 28 2 48 48 H 1.09004 * 109.47288 * 182.47688 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2385 5 1 2.6710 -0.0904 -1.8492 6 6 0.9045 -1.2892 -2.0494 7 8 0.4045 -2.3552 -1.7585 8 7 0.4316 -0.5868 -3.0979 9 6 -0.6374 -1.0834 -3.8456 10 7 -1.1750 -2.2491 -3.5269 11 6 -2.1900 -2.7524 -4.2035 12 6 -2.7255 -2.0811 -5.2849 13 6 -2.1894 -0.8570 -5.6591 14 6 -1.1262 -0.3488 -4.9256 15 8 -0.5695 0.8471 -5.2554 16 6 -1.1282 1.5360 -6.3759 17 6 -0.3778 2.8517 -6.5917 18 6 -0.9665 3.5778 -7.7737 19 1 -1.7936 3.1444 -8.3164 20 6 -0.4501 4.7958 -8.1616 21 7 -0.9643 5.4298 -9.1928 22 14 0.9799 5.5459 -7.2225 23 1 2.2595 5.0919 -7.8240 24 1 0.8971 7.0268 -7.2943 25 1 0.9200 5.1150 -5.8026 26 6 2.9059 -1.9117 -0.6763 27 6 3.2682 -1.4186 0.7471 28 7 2.0339 -0.7205 1.1893 29 6 2.3212 0.2122 2.2872 30 1 -0.3633 -1.0254 0.0685 31 1 -0.3633 0.5721 0.8538 32 1 -0.3633 0.4533 -0.9222 33 1 0.8312 0.2660 -3.3304 34 1 -2.6049 -3.7054 -3.9102 35 1 -3.5531 -2.5048 -5.8343 36 1 -2.5906 -0.3121 -6.5009 37 1 -1.0367 0.9147 -7.2668 38 1 -2.1808 1.7454 -6.1855 39 1 -0.4696 3.4727 -5.7007 40 1 0.6750 2.6426 -6.7819 41 1 -0.6007 6.2866 -9.4659 42 1 2.3214 -2.8304 -0.6291 43 1 3.8052 -2.0557 -1.2752 44 1 3.4889 -2.2616 1.4017 45 1 4.1116 -0.7291 0.7122 46 1 3.0446 0.9557 1.9525 47 1 1.4009 0.7114 2.5902 48 1 2.7315 -0.3385 3.1338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592758509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:02 Heat of formation + Delta-G solvation = -20.113258 kcal Electronic energy + Delta-G solvation = -28872.938408 eV Core-core repulsion = 24928.757071 eV Total energy + Delta-G solvation = -3944.181337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17177 -40.15580 -38.35934 -37.74544 -34.85459 -33.46642 -32.72445 -31.73906 -31.60035 -30.88724 -29.28892 -26.89722 -25.66290 -25.17475 -23.93697 -22.87815 -21.90586 -21.23214 -20.62707 -19.63931 -18.29387 -17.62965 -17.35155 -16.58089 -16.46493 -15.89528 -15.84575 -15.43468 -15.02531 -14.94150 -14.74091 -14.29601 -14.09782 -13.94739 -13.83535 -13.31699 -13.12978 -12.84099 -12.61079 -12.53380 -12.40172 -12.21875 -12.07470 -11.95111 -11.62287 -11.47009 -11.26504 -11.15065 -11.03741 -11.00874 -10.66753 -10.40279 -10.19179 -10.13755 -9.95696 -9.46599 -9.26743 -9.05232 -8.76835 -8.71769 -7.72820 -6.22411 -4.24252 1.16122 1.39553 2.64340 2.81563 3.20067 3.28048 3.30734 3.41658 3.62373 3.95072 4.16742 4.26990 4.29674 4.37725 4.69098 4.85653 4.90691 4.91047 4.95834 5.06699 5.08246 5.11325 5.11941 5.16856 5.24669 5.37402 5.42307 5.49971 5.52109 5.58088 5.67888 5.74255 5.76747 5.76947 5.95727 6.00840 6.14023 6.17293 6.27684 6.35738 6.53362 6.56668 6.71357 6.91667 7.09335 7.21223 7.48067 7.61537 8.02485 8.28628 8.31405 8.77844 9.37153 10.90054 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003165 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.418283 B = 8845.229857 C =10989.407654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 H 0.063 0.937 4 C -0.119 4.119 5 H 0.096 0.904 6 C 0.521 3.479 7 O -0.471 6.471 8 N -0.654 5.654 9 C 0.330 3.670 10 N -0.443 5.443 11 C 0.077 3.923 12 C -0.160 4.160 13 C -0.146 4.146 14 C 0.065 3.935 15 O -0.320 6.320 16 C 0.074 3.926 17 C -0.007 4.007 18 C -0.529 4.529 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.264 1.264 26 C -0.111 4.111 27 C 0.036 3.964 28 N -0.514 5.514 29 C 0.016 3.984 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.422 0.578 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.267 0.733 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.028 0.972 47 H 0.069 0.931 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -13.366 17.951 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.081 0.919 4 C -0.141 4.141 5 H 0.114 0.886 6 C 0.306 3.694 7 O -0.340 6.340 8 N -0.302 5.302 9 C 0.097 3.903 10 N -0.158 5.158 11 C -0.080 4.080 12 C -0.181 4.181 13 C -0.173 4.173 14 C 0.013 3.987 15 O -0.233 6.233 16 C 0.000 4.000 17 C -0.045 4.045 18 C -0.567 4.567 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.708 3.292 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.188 1.188 26 C -0.149 4.149 27 C -0.092 4.092 28 N -0.238 5.238 29 C -0.133 4.133 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.259 0.741 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.312 -14.671 19.109 24.670 hybrid contribution 0.939 2.181 -1.091 2.613 sum 6.251 -12.490 18.018 22.798 Atomic orbital electron populations 1.21959 0.93329 1.03803 1.01630 1.22258 0.96957 0.95548 0.88118 0.91934 1.22291 0.95842 0.99367 0.96624 0.88561 1.20345 0.84400 0.84933 0.79688 1.90783 1.56930 1.20362 1.65906 1.43609 1.32189 1.24620 1.29819 1.17818 0.91405 0.90873 0.90223 1.67637 1.10458 1.08917 1.28758 1.22436 0.92792 0.99984 0.92770 1.21908 1.01787 0.95475 0.98941 1.21635 0.96689 0.97590 1.01349 1.19560 0.95298 0.88394 0.95422 1.86041 1.57745 1.28913 1.50612 1.23136 0.98122 0.94167 0.84609 1.19579 0.96273 0.90407 0.98201 1.20809 1.18932 1.04486 1.12478 0.90719 1.24933 0.96778 0.96557 0.94691 1.69884 1.41754 1.15801 1.25914 0.86758 0.82876 0.78464 0.81146 1.20039 1.21124 1.18816 1.22526 0.99180 0.98385 0.94818 1.23239 0.91204 0.98560 0.96154 1.64715 1.26550 1.26291 1.06288 1.22532 1.00865 0.95135 0.94768 0.90512 0.92350 0.92187 0.74096 0.82580 0.84714 0.83642 0.92347 0.92325 0.95396 0.95833 0.92352 0.88514 0.90473 0.89567 0.93547 0.95328 0.91196 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.08 0.80 3.09 -66.64 -0.21 0.60 16 3 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 4 C -0.12 -1.21 3.37 -90.41 -0.31 -1.51 16 5 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 6 C 0.52 6.99 4.70 -10.99 -0.05 6.94 16 7 O -0.47 -7.82 13.18 5.55 0.07 -7.75 16 8 N -0.65 -8.95 4.98 -11.29 -0.06 -9.00 16 9 C 0.33 5.18 7.45 -154.44 -1.15 4.03 16 10 N -0.44 -7.10 7.88 -12.22 -0.10 -7.19 16 11 C 0.08 1.01 11.17 -17.55 -0.20 0.81 16 12 C -0.16 -1.93 10.10 -39.44 -0.40 -2.33 16 13 C -0.15 -2.05 9.14 -39.17 -0.36 -2.41 16 14 C 0.06 1.02 6.72 -38.92 -0.26 0.76 16 15 O -0.32 -5.48 9.38 -19.66 -0.18 -5.67 16 16 C 0.07 1.37 4.70 37.16 0.17 1.55 16 17 C -0.01 -0.16 4.41 -27.89 -0.12 -0.28 16 18 C -0.53 -14.19 9.66 -34.45 -0.33 -14.52 16 19 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -26.40 13.96 55.43 0.77 -25.62 16 22 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 26 C -0.11 -1.04 6.56 -24.87 -0.16 -1.20 16 27 C 0.04 0.30 6.56 -1.90 -0.01 0.29 16 28 N -0.51 -4.99 5.18 -230.78 -1.20 -6.19 16 29 C 0.02 0.12 9.41 60.06 0.57 0.68 16 30 H 0.08 1.07 7.00 -51.93 -0.36 0.71 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.72 7.11 -51.93 -0.37 0.35 16 33 H 0.42 5.06 8.05 -40.82 -0.33 4.73 16 34 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.15 1.91 6.44 -52.48 -0.34 1.58 16 37 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 38 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 39 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 40 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.10 1.12 6.92 -51.93 -0.36 0.76 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.33 8.00 -51.93 -0.42 -0.08 16 46 H 0.03 0.20 8.00 -51.93 -0.42 -0.22 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -32.34 384.29 -9.69 -42.03 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.52 Total: 3.79 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.60 Total: -6.09 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.58 Total: -48.01 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.11 Total: -13.42 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.34 -9.69 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592758509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.915 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds