Wall clock time and date at job start Tue Mar 31 2020 17:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.06578 * 2 1 4 4 C 1.53997 * 109.91546 * 238.79929 * 2 1 3 5 5 H 1.09001 * 110.39249 * 120.46473 * 4 2 1 6 6 C 1.50700 * 110.30683 * 358.33590 * 4 2 1 7 7 O 1.21285 * 119.99962 * 275.56131 * 6 4 2 8 8 N 1.34776 * 119.99935 * 95.56502 * 6 4 2 9 9 C 1.39577 * 120.00136 * 180.27312 * 8 6 4 10 10 N 1.32271 * 119.72168 * 359.45216 * 9 8 6 11 11 C 1.31962 * 121.68496 * 179.71352 * 10 9 8 12 12 C 1.38088 * 120.95616 * 0.56290 * 11 10 9 13 13 C 1.38776 * 119.35298 * 359.72643 * 12 11 10 14 14 C 1.38803 * 118.44821 * 359.97438 * 13 12 11 15 15 O 1.35973 * 120.49449 * 180.02562 * 14 13 12 16 16 C 1.42905 * 117.00302 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47169 * 179.97438 * 16 15 14 18 18 C 1.50693 * 109.47225 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00106 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00129 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00367 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00303 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47080 * 89.99715 * 22 20 18 24 24 H 1.48499 * 109.47662 * 210.00061 * 22 20 18 25 25 H 1.48504 * 109.46614 * 330.00137 * 22 20 18 26 26 C 1.54599 * 105.13715 * 239.41892 * 4 2 1 27 27 C 1.54932 * 102.92514 * 338.04455 * 26 4 2 28 28 N 1.47896 * 109.91788 * 121.20729 * 2 1 3 29 29 C 1.46895 * 111.00153 * 265.19372 * 28 2 1 30 30 H 1.08999 * 109.47105 * 183.82461 * 1 2 3 31 31 H 1.09006 * 109.46693 * 303.82221 * 1 2 3 32 32 H 1.08996 * 109.47002 * 63.82439 * 1 2 3 33 33 H 0.97006 * 120.00134 * 359.97438 * 8 6 4 34 34 H 1.08002 * 119.52284 * 180.26710 * 11 10 9 35 35 H 1.08000 * 120.32099 * 179.70433 * 12 11 10 36 36 H 1.08004 * 120.77322 * 180.02562 * 13 12 11 37 37 H 1.08999 * 109.46848 * 299.99786 * 16 15 14 38 38 H 1.08996 * 109.46701 * 59.99715 * 16 15 14 39 39 H 1.09000 * 109.46819 * 300.00396 * 17 16 15 40 40 H 1.09002 * 109.47247 * 59.99929 * 17 16 15 41 41 H 0.96995 * 120.00500 * 180.02562 * 21 20 18 42 42 H 1.09000 * 110.71805 * 96.39977 * 26 4 2 43 43 H 1.09000 * 110.72125 * 219.67960 * 26 4 2 44 44 H 1.08996 * 110.67207 * 155.84551 * 27 26 4 45 45 H 1.08998 * 110.66421 * 278.81296 * 27 26 4 46 46 H 1.09007 * 109.47486 * 302.47940 * 29 28 2 47 47 H 1.08999 * 109.47096 * 62.47691 * 29 28 2 48 48 H 1.09004 * 109.47288 * 182.47688 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0546 -0.7501 -1.2385 5 1 2.6710 -0.0904 -1.8492 6 6 0.9045 -1.2892 -2.0494 7 8 0.4045 -2.3552 -1.7585 8 7 0.4316 -0.5868 -3.0979 9 6 -0.6374 -1.0834 -3.8456 10 7 -1.1750 -2.2491 -3.5269 11 6 -2.1900 -2.7524 -4.2035 12 6 -2.7255 -2.0811 -5.2849 13 6 -2.1894 -0.8570 -5.6591 14 6 -1.1262 -0.3488 -4.9256 15 8 -0.5695 0.8471 -5.2554 16 6 -1.1282 1.5360 -6.3759 17 6 -0.3778 2.8517 -6.5917 18 6 -0.9665 3.5778 -7.7737 19 1 -1.7936 3.1444 -8.3164 20 6 -0.4501 4.7958 -8.1616 21 7 -0.9643 5.4298 -9.1928 22 14 0.9799 5.5459 -7.2225 23 1 2.2595 5.0919 -7.8240 24 1 0.8971 7.0268 -7.2943 25 1 0.9200 5.1150 -5.8026 26 6 2.9059 -1.9117 -0.6763 27 6 3.2682 -1.4186 0.7471 28 7 2.0339 -0.7205 1.1893 29 6 2.3212 0.2122 2.2872 30 1 -0.3633 -1.0254 0.0685 31 1 -0.3633 0.5721 0.8538 32 1 -0.3633 0.4533 -0.9222 33 1 0.8312 0.2660 -3.3304 34 1 -2.6049 -3.7054 -3.9102 35 1 -3.5531 -2.5048 -5.8343 36 1 -2.5906 -0.3121 -6.5009 37 1 -1.0367 0.9147 -7.2668 38 1 -2.1808 1.7454 -6.1855 39 1 -0.4696 3.4727 -5.7007 40 1 0.6750 2.6426 -6.7819 41 1 -0.6007 6.2866 -9.4659 42 1 2.3214 -2.8304 -0.6291 43 1 3.8052 -2.0557 -1.2752 44 1 3.4889 -2.2616 1.4017 45 1 4.1116 -0.7291 0.7122 46 1 3.0446 0.9557 1.9525 47 1 1.4009 0.7114 2.5902 48 1 2.7315 -0.3385 3.1338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592758509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:01 Heat of formation + Delta-G solvation = -41.555280 kcal Electronic energy + Delta-G solvation = -28873.868204 eV Core-core repulsion = 24928.757071 eV Total energy + Delta-G solvation = -3945.111133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21801 -41.14700 -39.42108 -38.83808 -35.96336 -35.39433 -33.50993 -33.05763 -32.53335 -32.30850 -30.46316 -27.67593 -27.31509 -25.88740 -25.09644 -24.07414 -23.01637 -22.19004 -21.93374 -20.61521 -19.60447 -18.99257 -18.32612 -18.19874 -17.38042 -17.15577 -16.89431 -16.35991 -16.25393 -16.01409 -15.87316 -15.52960 -15.26959 -14.97422 -14.88898 -14.73972 -14.17312 -14.07649 -13.78431 -13.58043 -13.37778 -13.34344 -13.18094 -12.85219 -12.75166 -12.70822 -12.31338 -12.19695 -12.17631 -11.95161 -11.86131 -11.81087 -11.69859 -11.62610 -11.47157 -11.22486 -10.80399 -10.41588 -10.14538 -9.41785 -8.86376 -8.33373 -6.40399 0.08754 0.27536 1.37947 1.39629 1.51171 1.64104 1.82180 2.09209 2.34392 2.86791 2.95758 3.02304 3.27891 3.49904 3.54149 3.72423 3.83933 4.00438 4.10242 4.18029 4.23656 4.23943 4.27623 4.30153 4.41388 4.45434 4.46638 4.48828 4.66967 4.68721 4.71482 4.78966 4.93553 4.94917 4.98950 5.02341 5.06323 5.13712 5.19756 5.23581 5.30355 5.32637 5.49066 5.59094 5.88196 6.07976 6.16608 6.21987 6.27935 6.66383 6.95678 7.24987 7.28728 8.82291 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003165 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.418283 B = 8845.229857 C =10989.407654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.081 0.919 4 C -0.116 4.116 5 H 0.122 0.878 6 C 0.521 3.479 7 O -0.508 6.508 8 N -0.652 5.652 9 C 0.316 3.684 10 N -0.472 5.472 11 C 0.074 3.926 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.042 3.958 15 O -0.323 6.323 16 C 0.086 3.914 17 C -0.005 4.005 18 C -0.536 4.536 19 H 0.041 0.959 20 C 0.012 3.988 21 N -0.945 5.945 22 Si 0.948 3.052 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.244 1.244 26 C -0.110 4.110 27 C 0.041 3.959 28 N -0.536 5.536 29 C 0.016 3.984 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.428 0.572 34 H 0.184 0.816 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.269 0.731 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.067 0.933 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -13.575 19.407 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.138 4.138 5 H 0.140 0.860 6 C 0.308 3.692 7 O -0.380 6.380 8 N -0.300 5.300 9 C 0.084 3.916 10 N -0.187 5.187 11 C -0.082 4.082 12 C -0.168 4.168 13 C -0.177 4.177 14 C -0.009 4.009 15 O -0.237 6.237 16 C 0.012 3.988 17 C -0.042 4.042 18 C -0.574 4.574 19 H 0.060 0.940 20 C -0.186 4.186 21 N -0.584 5.584 22 Si 0.771 3.229 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.167 1.167 26 C -0.148 4.148 27 C -0.086 4.086 28 N -0.261 5.261 29 C -0.132 4.132 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.266 0.734 34 H 0.201 0.799 35 H 0.189 0.811 36 H 0.170 0.830 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.795 -14.887 20.582 26.295 hybrid contribution 0.334 2.099 -1.559 2.636 sum 7.129 -12.789 19.023 24.005 Atomic orbital electron populations 1.21856 0.94921 1.01761 1.01461 1.22237 0.95649 0.96461 0.88286 0.90158 1.22391 0.94837 1.00067 0.96547 0.85990 1.20932 0.84606 0.84321 0.79299 1.90756 1.58318 1.22091 1.66827 1.43694 1.31786 1.24843 1.29724 1.18002 0.92052 0.91009 0.90547 1.67696 1.11764 1.09372 1.29908 1.23023 0.91846 1.00839 0.92503 1.22253 1.01962 0.94316 0.98316 1.21889 0.96183 0.98370 1.01233 1.19679 0.96572 0.88192 0.96439 1.85965 1.57976 1.29757 1.49965 1.22749 0.97599 0.92939 0.85519 1.19428 0.96630 0.91893 0.96253 1.21123 1.17972 1.04817 1.13471 0.94022 1.25898 0.99869 0.97214 0.95640 1.70031 1.43851 1.16543 1.28019 0.85686 0.79188 0.77378 0.80629 1.19029 1.21006 1.16726 1.22513 0.99303 0.96892 0.96101 1.23256 0.91170 0.98976 0.95240 1.64674 1.27698 1.27110 1.06603 1.22563 1.01123 0.95153 0.94387 0.93542 0.91538 0.93117 0.73361 0.79898 0.81073 0.82986 0.92076 0.92116 0.95080 0.95184 0.92205 0.91294 0.88572 0.89080 0.91634 0.94236 0.91428 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.37 71.98 0.60 -2.65 16 2 C 0.08 1.53 3.09 45.06 0.14 1.67 16 3 H 0.08 1.22 7.70 -2.38 -0.02 1.20 16 4 C -0.12 -2.20 3.37 -10.66 -0.04 -2.23 16 5 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 6 C 0.52 13.92 4.70 87.66 0.41 14.33 16 7 O -0.51 -17.31 13.18 -3.05 -0.04 -17.35 16 8 N -0.65 -17.63 4.98 -308.03 -1.53 -19.16 16 9 C 0.32 9.85 7.45 132.98 0.99 10.84 16 10 N -0.47 -14.98 7.88 -192.58 -1.52 -16.50 16 11 C 0.07 1.84 11.17 84.64 0.95 2.79 16 12 C -0.15 -3.24 10.10 22.36 0.23 -3.01 16 13 C -0.15 -4.02 9.14 22.53 0.21 -3.81 16 14 C 0.04 1.29 6.72 22.70 0.15 1.44 16 15 O -0.32 -10.78 9.38 -93.24 -0.88 -11.66 16 16 C 0.09 3.16 4.70 71.98 0.34 3.50 16 17 C 0.00 -0.20 4.41 29.85 0.13 -0.07 16 18 C -0.54 -29.00 9.66 25.60 0.25 -28.75 16 19 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 20 C 0.01 0.65 5.47 84.65 0.46 1.12 16 21 N -0.94 -56.72 13.96 21.45 0.30 -56.43 16 22 Si 0.95 41.70 27.47 68.60 1.88 43.59 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 26 C -0.11 -1.92 6.56 31.80 0.21 -1.71 16 27 C 0.04 0.59 6.56 86.65 0.57 1.16 16 28 N -0.54 -9.56 5.18 -884.06 -4.58 -14.14 16 29 C 0.02 0.21 9.41 127.69 1.20 1.41 16 30 H 0.05 1.34 7.00 -2.39 -0.02 1.32 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.05 1.22 7.11 -2.39 -0.02 1.21 16 33 H 0.43 9.94 8.05 -92.70 -0.75 9.19 16 34 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.15 3.81 6.44 -2.91 -0.02 3.79 16 37 H 0.06 2.17 7.70 -2.39 -0.02 2.16 16 38 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 39 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 40 H 0.03 1.27 7.57 -2.39 -0.02 1.26 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.07 1.61 6.92 -2.39 -0.02 1.60 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 0.71 8.00 -2.39 -0.02 0.69 16 46 H 0.04 0.43 8.00 -2.38 -0.02 0.41 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -71.68 384.29 0.59 -71.08 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.16 Total: 24.55 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.80 Total: -3.98 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -7.33 Total: -106.23 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.92 Total: -29.01 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.88 Total: 43.59 kcal Total: -71.68 0.59 -71.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592758509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.527 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds