Wall clock time and date at job start Tue Mar 31 2020 18:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.55249 * 2 1 4 4 C 1.53297 * 109.51056 * 239.87049 * 2 1 3 5 5 N 1.47149 * 108.38460 * 187.77428 * 4 2 1 6 6 C 1.34784 * 120.98073 * 230.51646 * 5 4 2 7 7 O 1.21583 * 120.00342 * 17.77667 * 6 5 4 8 8 N 1.34779 * 119.99608 * 197.77826 * 6 5 4 9 9 C 1.46504 * 120.00126 * 10.87439 * 8 6 5 10 10 C 1.50701 * 109.47151 * 254.30340 * 9 8 6 11 11 H 1.07998 * 120.00021 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99755 * 180.02562 * 10 9 8 13 13 N 1.31504 * 120.00315 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99839 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47329 * 89.99647 * 14 12 10 16 16 H 1.48492 * 109.47256 * 209.99829 * 14 12 10 17 17 H 1.48508 * 109.47283 * 329.99735 * 14 12 10 18 18 C 1.46497 * 119.99677 * 190.87597 * 8 6 5 19 19 C 1.50700 * 109.47036 * 269.99899 * 18 8 6 20 20 C 1.38677 * 120.41754 * 270.02287 * 19 18 8 21 21 C 1.38633 * 118.41739 * 179.97438 * 20 19 18 22 22 C 1.38225 * 119.16266 * 359.97438 * 21 20 19 23 23 N 1.31860 * 120.76512 * 359.73161 * 22 21 20 24 24 C 1.31883 * 121.72141 * 0.55929 * 23 22 21 25 25 C 1.47151 * 118.03757 * 50.78356 * 5 4 2 26 26 C 1.53713 * 108.16490 * 309.16326 * 25 5 4 27 27 H 1.09001 * 109.65556 * 292.56910 * 26 25 5 28 28 C 1.52994 * 109.48661 * 172.39227 * 26 25 5 29 29 O 1.42961 * 109.51422 * 120.12583 * 2 1 3 30 30 H 1.09002 * 109.47229 * 180.12971 * 1 2 3 31 31 H 1.09006 * 109.47240 * 300.12570 * 1 2 3 32 32 H 1.09000 * 109.47646 * 60.12808 * 1 2 3 33 33 H 1.09000 * 109.67866 * 68.05282 * 4 2 1 34 34 H 1.08996 * 109.71532 * 307.51350 * 4 2 1 35 35 H 1.09004 * 109.46918 * 14.30219 * 9 8 6 36 36 H 1.09006 * 109.46848 * 134.30124 * 9 8 6 37 37 H 0.97006 * 120.00389 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46882 * 150.00244 * 18 8 6 39 39 H 1.08998 * 109.47380 * 29.99959 * 18 8 6 40 40 H 1.07999 * 120.79082 * 0.02562 * 20 19 18 41 41 H 1.07997 * 120.41556 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.61868 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.61971 * 179.71712 * 24 23 22 44 44 H 1.09006 * 109.67812 * 68.93845 * 25 5 4 45 45 H 1.08996 * 109.68521 * 189.48789 * 25 5 4 46 46 H 1.08993 * 109.47261 * 300.36265 * 28 26 25 47 47 H 1.09004 * 109.46965 * 60.36304 * 28 26 25 48 48 H 1.09004 * 109.46902 * 180.36336 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7253 -1.2497 5 7 3.5011 -0.8763 -1.1336 6 6 4.3192 -0.5043 -2.1381 7 8 3.9145 0.2447 -3.0061 8 7 5.5859 -0.9627 -2.1802 9 6 6.0048 -2.0418 -1.2823 10 6 6.8677 -1.4753 -0.1844 11 1 7.0831 -0.4173 -0.1583 12 6 7.3832 -2.3079 0.7862 13 7 7.1214 -3.5962 0.7543 14 14 8.4535 -1.6058 2.1467 15 1 7.5984 -1.2078 3.2938 16 1 9.4288 -2.6342 2.5898 17 1 9.1842 -0.4172 1.6382 18 6 6.5440 -0.3817 -3.1240 19 6 6.4927 -1.1423 -4.4240 20 6 7.3148 -2.2403 -4.6279 21 6 7.2331 -2.9098 -5.8391 22 6 6.3409 -2.4642 -6.7962 23 7 5.5702 -1.4195 -6.5654 24 6 5.6249 -0.7553 -5.4273 25 6 4.0402 -1.4510 0.1091 26 6 3.4313 -0.6855 1.2948 27 1 3.8030 0.3392 1.2995 28 6 3.8211 -1.3766 2.6029 29 8 2.0075 -0.6763 1.1655 30 1 -0.3634 -1.0277 0.0023 31 1 -0.3634 0.5158 0.8889 32 1 -0.3634 0.5118 -0.8911 33 1 1.8030 -0.1399 -2.1376 34 1 1.5758 -1.7079 -1.3214 35 1 5.1243 -2.5134 -0.8457 36 1 6.5725 -2.7829 -1.8450 37 1 7.4838 -4.1820 1.4374 38 1 7.5488 -0.4438 -2.7062 39 1 6.2892 0.6627 -3.3038 40 1 8.0018 -2.5666 -3.8611 41 1 7.8580 -3.7692 -6.0321 42 1 6.2714 -2.9800 -7.7425 43 1 4.9811 0.0986 -5.2760 44 1 3.7717 -2.5056 0.1726 45 1 5.1251 -1.3466 0.1214 46 1 3.4506 -2.4016 2.5967 47 1 4.9067 -1.3832 2.7008 48 1 3.3838 -0.8372 3.4431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599205888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:16 Heat of formation + Delta-G solvation = -11.720936 kcal Electronic energy + Delta-G solvation = -30643.363151 eV Core-core repulsion = 26699.545732 eV Total energy + Delta-G solvation = -3943.817419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.92047 -40.96297 -39.62167 -37.36074 -35.91047 -34.86015 -34.51939 -33.37843 -32.50647 -31.16812 -29.77268 -28.14712 -27.38380 -26.15766 -24.78391 -24.29778 -23.17915 -22.85688 -21.87868 -20.49692 -18.77040 -18.17157 -17.93259 -17.86109 -17.39011 -17.07722 -16.79080 -16.61270 -16.30566 -15.85220 -15.69604 -15.18722 -14.97992 -14.69555 -14.49195 -14.38039 -14.28794 -14.08737 -13.90767 -13.42299 -13.37958 -13.07234 -13.04046 -12.95747 -12.89077 -12.65093 -12.50238 -12.39576 -12.19677 -12.11428 -11.87766 -11.67875 -11.39288 -11.13949 -10.75307 -10.63493 -10.51239 -10.44406 -9.96653 -9.66299 -9.17215 -8.22397 -6.37452 0.14675 0.35001 1.43887 1.49547 1.56076 1.77976 2.10526 2.38664 2.68325 2.81129 3.02994 3.10074 3.56029 3.71582 3.89875 3.94022 4.00712 4.05717 4.08060 4.10574 4.14152 4.16320 4.41165 4.44384 4.49577 4.63956 4.71351 4.71952 4.74933 4.78971 4.86593 4.90710 4.95608 4.97310 5.07031 5.18770 5.19433 5.28483 5.30003 5.36652 5.37310 5.52357 5.65675 5.79806 5.84402 5.94358 6.16926 6.27189 6.68307 6.98010 7.02899 7.31117 7.60856 8.80410 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.005662 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.549571 B = 4944.043761 C = 7562.885227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 H 0.053 0.947 4 C 0.100 3.900 5 N -0.636 5.636 6 C 0.704 3.296 7 O -0.628 6.628 8 N -0.611 5.611 9 C 0.230 3.770 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.045 3.955 13 N -0.898 5.898 14 Si 0.942 3.058 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.183 3.817 19 C -0.156 4.156 20 C -0.068 4.068 21 C -0.170 4.170 22 C 0.087 3.913 23 N -0.515 5.515 24 C 0.107 3.893 25 C 0.028 3.972 26 C 0.082 3.918 27 H 0.050 0.950 28 C -0.131 4.131 29 O -0.389 6.389 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.009 0.991 37 H 0.272 0.728 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.185 0.815 43 H 0.145 0.855 44 H 0.043 0.957 45 H 0.177 0.823 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 2.116 -2.766 5.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.018 3.982 3 H 0.071 0.929 4 C -0.024 4.024 5 N -0.372 5.372 6 C 0.408 3.592 7 O -0.511 6.511 8 N -0.344 5.344 9 C 0.109 3.891 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.160 4.160 13 N -0.534 5.534 14 Si 0.767 3.233 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.196 1.196 18 C 0.059 3.941 19 C -0.159 4.159 20 C -0.094 4.094 21 C -0.189 4.189 22 C -0.070 4.070 23 N -0.224 5.224 24 C -0.049 4.049 25 C -0.093 4.093 26 C 0.023 3.977 27 H 0.068 0.932 28 C -0.188 4.188 29 O -0.309 6.309 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.157 0.843 41 H 0.184 0.816 42 H 0.202 0.798 43 H 0.162 0.838 44 H 0.061 0.939 45 H 0.193 0.807 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.569 2.511 -3.641 6.359 hybrid contribution 1.370 -0.217 1.246 1.865 sum -3.198 2.294 -2.395 4.608 Atomic orbital electron populations 1.21704 0.89865 1.03584 1.03840 1.22528 0.97004 0.94501 0.84176 0.92917 1.22244 0.78952 1.01163 1.00021 1.47298 1.06398 1.67334 1.16213 1.16075 0.81369 0.80175 0.81616 1.90742 1.76108 1.42254 1.42011 1.47362 1.08932 1.38977 1.39118 1.19927 0.96331 0.84931 0.87873 1.21356 1.31670 0.94943 1.10496 0.92083 1.25506 0.96311 0.94690 0.99469 1.70000 1.44026 1.04183 1.35215 0.85799 0.79188 0.78358 0.79992 1.18978 1.20953 1.19558 1.20014 0.93458 0.95818 0.84829 1.21339 0.98363 0.98781 0.97406 1.21799 0.96978 0.92998 0.97651 1.22456 1.00877 1.01840 0.93757 1.23329 0.91035 0.92302 1.00354 1.67710 1.23657 1.08714 1.22282 1.22678 0.95302 0.98390 0.88549 1.24408 1.07927 0.95023 0.81938 1.22564 0.80549 0.98468 0.96082 0.93179 1.21608 1.01634 1.00803 0.94802 1.87870 1.21569 1.77736 1.43709 0.91455 0.90710 0.89142 0.89049 0.91506 0.93028 0.97338 0.91890 0.88705 0.90342 0.84331 0.81643 0.79766 0.83796 0.93861 0.80687 0.92167 0.91283 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.57 71.98 0.69 -2.15 16 2 C 0.08 2.27 3.40 30.69 0.10 2.38 16 3 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.10 3.36 5.95 86.36 0.51 3.88 16 5 N -0.64 -25.54 2.96 -836.53 -2.47 -28.01 16 6 C 0.70 30.61 7.97 179.05 1.43 32.04 16 7 O -0.63 -28.66 14.54 -3.98 -0.06 -28.72 16 8 N -0.61 -25.64 2.47 -850.01 -2.10 -27.74 16 9 C 0.23 10.40 4.61 85.63 0.39 10.79 16 10 C -0.55 -25.25 6.59 25.60 0.17 -25.08 16 11 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 12 C 0.04 2.06 5.46 84.66 0.46 2.52 16 13 N -0.90 -44.08 13.28 21.45 0.28 -43.80 16 14 Si 0.94 37.04 29.54 68.60 2.03 39.07 16 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 18 C 0.18 6.76 5.42 85.63 0.46 7.22 16 19 C -0.16 -5.42 5.48 -19.77 -0.11 -5.53 16 20 C -0.07 -2.09 9.86 22.47 0.22 -1.87 16 21 C -0.17 -4.33 10.11 22.36 0.23 -4.10 16 22 C 0.09 2.32 11.18 84.69 0.95 3.26 16 23 N -0.51 -17.34 10.36 -195.84 -2.03 -19.37 16 24 C 0.11 3.86 10.58 84.67 0.90 4.76 16 25 C 0.03 1.11 3.84 86.50 0.33 1.45 16 26 C 0.08 2.90 3.41 30.83 0.11 3.01 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 C -0.13 -4.21 9.57 71.98 0.69 -3.52 16 29 O -0.39 -13.07 10.03 -148.98 -1.49 -14.57 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 3.11 7.12 -2.39 -0.02 3.09 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 2.50 4.12 -3.16 -0.01 2.49 16 36 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.27 12.73 8.31 -92.70 -0.77 11.96 16 38 H 0.09 3.37 7.82 -2.39 -0.02 3.35 16 39 H 0.08 2.88 7.55 -2.39 -0.02 2.86 16 40 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.14 5.49 7.25 -2.91 -0.02 5.47 16 44 H 0.04 1.87 7.49 -2.38 -0.02 1.86 16 45 H 0.18 7.76 2.24 -5.87 -0.01 7.75 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 48 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -57.53 382.78 2.63 -54.90 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: 0.94 Total: 39.16 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 7.53 Total: 29.06 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.32 Total: -118.91 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.55 Total: -43.28 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -57.53 2.63 -54.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599205888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.180 kcal (2) G-P(sol) polarization free energy of solvation -57.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds