Wall clock time and date at job start Tue Mar 31 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46844 * 2 1 4 4 N 1.46499 * 109.46896 * 239.99824 * 2 1 3 5 5 C 1.34773 * 119.99801 * 85.00244 * 4 2 1 6 6 O 1.21587 * 120.00280 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00163 * 179.97438 * 7 5 4 9 9 C 1.53037 * 109.46096 * 275.02872 * 8 7 5 10 10 C 1.53192 * 109.31203 * 178.59719 * 9 8 7 11 11 N 1.46929 * 108.76200 * 54.65862 * 10 9 8 12 12 C 1.36944 * 120.62856 * 126.40572 * 11 10 9 13 13 H 1.07997 * 120.00331 * 331.82325 * 12 11 10 14 14 C 1.38812 * 119.99831 * 151.83132 * 12 11 10 15 15 N 1.31618 * 119.99821 * 343.06125 * 14 12 11 16 16 Si 1.86797 * 119.99916 * 163.07068 * 14 12 11 17 17 H 1.48499 * 109.47268 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47416 * 119.99892 * 16 14 12 19 19 H 1.48511 * 109.46595 * 239.99486 * 16 14 12 20 20 C 1.46922 * 118.74094 * 306.38171 * 11 10 9 21 21 C 1.53045 * 109.45963 * 154.97539 * 8 7 5 22 22 C 1.50704 * 109.46684 * 120.00020 * 2 1 3 23 23 C 1.38288 * 119.97107 * 79.73012 * 22 2 1 24 24 C 1.38241 * 120.10771 * 179.71785 * 23 22 2 25 25 C 1.38162 * 120.05936 * 0.55292 * 24 23 22 26 26 C 1.38716 * 119.94383 * 359.71900 * 25 24 23 27 27 O 1.35895 * 120.05910 * 179.97438 * 26 25 24 28 28 C 1.38122 * 119.96968 * 259.99534 * 22 2 1 29 29 H 1.09003 * 109.47043 * 299.99995 * 1 2 3 30 30 H 1.09000 * 109.47184 * 59.99880 * 1 2 3 31 31 H 1.09003 * 109.47310 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00504 * 265.00124 * 4 2 1 33 33 H 0.96998 * 120.00266 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.45974 * 35.00472 * 8 7 5 35 35 H 1.08996 * 109.50343 * 298.56734 * 9 8 7 36 36 H 1.09002 * 109.49704 * 58.66534 * 9 8 7 37 37 H 1.08997 * 109.60050 * 294.87214 * 10 9 8 38 38 H 1.09001 * 109.70370 * 174.50756 * 10 9 8 39 39 H 0.97002 * 119.99829 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.58570 * 293.82177 * 20 11 10 41 41 H 1.09003 * 109.70436 * 173.46678 * 20 11 10 42 42 H 1.09002 * 109.49483 * 301.33868 * 21 8 7 43 43 H 1.08998 * 109.49839 * 61.40400 * 21 8 7 44 44 H 1.08000 * 119.94396 * 359.97315 * 23 22 2 45 45 H 1.07998 * 119.96989 * 180.24479 * 24 23 22 46 46 H 1.08003 * 120.03402 * 179.70120 * 25 24 23 47 47 H 0.96702 * 113.99539 * 270.02575 * 27 26 25 48 48 H 1.07997 * 120.03148 * 0.02953 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8575 1.1613 -2.4118 7 7 2.5967 -0.6535 -3.4574 8 6 2.7361 0.0772 -4.7195 9 6 1.3931 0.0886 -5.4531 10 6 1.5338 0.8832 -6.7553 11 7 2.6428 0.3183 -7.5361 12 6 2.4544 -0.0693 -8.8360 13 1 1.4798 -0.3971 -9.1660 14 6 3.5164 -0.0409 -9.7295 15 7 4.5973 0.6541 -9.4451 16 14 3.4113 -0.9890 -11.3356 17 1 2.1014 -1.6839 -11.4153 18 1 3.5426 -0.0470 -12.4760 19 1 4.5067 -1.9902 -11.3919 20 6 3.9577 0.1775 -6.8961 21 6 3.7898 -0.6088 -5.5922 22 6 2.0323 -0.7105 1.2305 23 6 2.0611 -2.0926 1.2669 24 6 2.5267 -2.7471 2.3920 25 6 2.9538 -2.0217 3.4875 26 6 2.9206 -0.6353 3.4557 27 8 3.3396 0.0805 4.5322 28 6 2.4582 0.0194 2.3231 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6318 -1.1527 33 1 2.8274 -1.5947 -3.4139 34 1 3.0462 1.1017 -4.5137 35 1 1.0944 -0.9345 -5.6814 36 1 0.6376 0.5563 -4.8217 37 1 1.7437 1.9277 -6.5253 38 1 0.6100 0.8140 -7.3297 39 1 5.3393 0.6742 -10.0696 40 1 4.3653 1.1646 -6.6776 41 1 4.6348 -0.3583 -7.5613 42 1 4.7404 -0.6376 -5.0596 43 1 3.4687 -1.6255 -5.8187 44 1 1.7232 -2.6614 0.4133 45 1 2.5520 -3.8265 2.4164 46 1 3.3130 -2.5336 4.3681 47 1 2.6405 0.2751 5.1713 48 1 2.4310 1.0987 2.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609573339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:22 Heat of formation + Delta-G solvation = -29.507510 kcal Electronic energy + Delta-G solvation = -28223.959488 eV Core-core repulsion = 24279.370786 eV Total energy + Delta-G solvation = -3944.588703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57650 -39.74784 -37.86420 -37.17027 -35.31098 -34.29467 -32.46411 -31.55998 -30.35112 -29.96561 -29.47038 -28.90233 -25.09649 -24.19104 -23.15295 -22.34023 -22.06836 -21.15703 -20.44284 -19.41031 -18.70560 -18.03312 -16.96481 -16.65134 -16.41872 -15.82403 -15.48087 -15.13675 -14.82054 -14.58612 -14.46766 -14.07472 -13.87990 -13.59199 -13.52633 -13.41441 -12.97581 -12.69205 -12.56942 -12.47749 -12.37384 -12.27068 -11.80858 -11.54052 -11.42740 -11.10729 -10.82332 -10.81467 -10.72168 -10.45469 -10.24303 -10.02751 -9.99264 -9.72946 -9.51433 -9.37036 -9.16006 -9.02754 -8.58840 -8.42390 -6.66475 -5.78200 -3.20256 0.78491 0.87669 2.77330 3.18524 3.37416 3.39030 3.45431 3.47733 3.77233 4.22873 4.35232 4.46444 4.50582 4.68494 4.82626 4.98335 5.05772 5.14267 5.34361 5.36381 5.43692 5.46871 5.53423 5.53866 5.64028 5.68616 5.92092 5.93271 5.97368 6.02099 6.06591 6.11561 6.31993 6.35204 6.39146 6.47160 6.53145 6.60776 6.64369 6.83137 6.92773 7.01820 7.13405 7.22174 7.34351 7.64202 7.81046 8.16090 8.46159 8.77456 9.22307 9.85633 10.42857 11.30735 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.001979 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.573321 B =14144.979338 C =14352.531866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.202 3.798 3 H 0.098 0.902 4 N -0.747 5.747 5 C 0.703 3.297 6 O -0.589 6.589 7 N -0.739 5.739 8 C 0.169 3.831 9 C -0.139 4.139 10 C 0.147 3.853 11 N -0.593 5.593 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.175 3.825 21 C -0.146 4.146 22 C -0.070 4.070 23 C -0.122 4.122 24 C -0.099 4.099 25 C -0.147 4.147 26 C 0.108 3.892 27 O -0.499 6.499 28 C -0.133 4.133 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.393 0.607 33 H 0.390 0.610 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.253 0.747 40 H 0.021 0.979 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.391 0.609 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -7.307 27.273 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.096 3.904 3 H 0.116 0.884 4 N -0.404 5.404 5 C 0.403 3.597 6 O -0.467 6.467 7 N -0.392 5.392 8 C 0.065 3.935 9 C -0.179 4.179 10 C 0.020 3.980 11 N -0.316 5.316 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.216 1.216 20 C 0.048 3.952 21 C -0.186 4.186 22 C -0.071 4.071 23 C -0.141 4.141 24 C -0.117 4.117 25 C -0.166 4.166 26 C 0.063 3.937 27 O -0.309 6.309 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.227 0.773 33 H 0.223 0.777 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.247 0.753 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.146 -6.180 26.793 27.973 hybrid contribution -0.149 -1.406 -0.431 1.478 sum -5.295 -7.586 26.362 27.938 Atomic orbital electron populations 1.22189 0.94219 1.02338 1.02908 1.19570 0.93996 0.96519 0.80287 0.88444 1.45285 1.72711 1.13500 1.08895 1.15991 0.78334 0.85179 0.80159 1.90918 1.56909 1.14307 1.84585 1.45550 1.70436 1.13627 1.09584 1.20911 0.96167 0.96153 0.80250 1.22383 0.96332 1.01119 0.98070 1.20880 0.92337 0.94254 0.90490 1.44105 1.06009 1.71685 1.09776 1.19233 0.96605 1.36703 0.85446 0.91617 1.25062 0.97984 0.99106 0.97638 1.70037 1.07084 1.40881 1.36766 0.86229 0.77488 0.79549 0.83547 1.20281 1.21742 1.21601 1.20738 0.88399 0.96619 0.89453 1.22543 0.96589 1.00678 0.98797 1.19874 0.98265 0.93812 0.95152 1.20977 1.00735 0.93737 0.98615 1.21026 0.97829 1.00092 0.92776 1.21461 1.01797 0.93340 0.99977 1.18434 0.97330 0.89674 0.88216 1.84844 1.38670 1.74342 1.33072 1.21295 0.99695 1.00780 0.93438 0.91677 0.91149 0.92395 0.77287 0.77680 0.90070 0.92501 0.92719 0.96169 0.92620 0.93668 0.96090 0.89056 0.92795 0.92261 0.85725 0.85353 0.85402 0.75334 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.46 37.16 0.35 -1.10 16 2 C 0.20 2.01 2.77 -69.08 -0.19 1.82 16 3 H 0.10 1.16 7.44 -51.93 -0.39 0.77 16 4 N -0.75 -8.01 5.03 -59.81 -0.30 -8.31 16 5 C 0.70 10.48 8.50 -86.92 -0.74 9.74 16 6 O -0.59 -11.22 15.67 5.29 0.08 -11.13 16 7 N -0.74 -10.50 5.08 -58.63 -0.30 -10.79 16 8 C 0.17 2.99 2.42 -67.89 -0.16 2.82 16 9 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 10 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 11 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 12 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 13 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 14 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 15 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 16 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 21 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 22 C -0.07 -0.60 4.95 -104.64 -0.52 -1.11 16 23 C -0.12 -0.88 9.05 -39.56 -0.36 -1.24 16 24 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 25 C -0.15 -1.05 9.99 -39.43 -0.39 -1.45 16 26 C 0.11 0.88 6.71 -39.21 -0.26 0.61 16 27 O -0.50 -3.65 13.50 -19.41 -0.26 -3.91 16 28 C -0.13 -1.13 9.61 -39.43 -0.38 -1.51 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.39 3.18 6.90 -40.82 -0.28 2.90 16 33 H 0.39 4.41 8.62 -40.82 -0.35 4.06 16 34 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.12 0.70 6.93 -52.49 -0.36 0.34 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.39 0.91 9.06 45.56 0.41 1.32 16 48 H 0.13 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -33.97 389.52 -10.17 -44.13 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.71 Total: 6.36 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -3.62 Total: 2.19 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.49 Total: -60.08 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.18 Total: -15.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.97 -10.17 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609573339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.625 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds